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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157401 7nvx:3 (3.9) BS02 ZN ? GO:0000082 ... P51948 33902107
    157402 7nvx:4 (3.9) BS01 ZN ? GO:0000438 ... Q13889 33902107
    157403 7nvx:4 (3.9) BS02 ZN ? GO:0000438 ... Q13889 33902107
    157404 7nvx:6 (3.9) BS01 ZN ? GO:0000438 ... Q13888 33902107
    157405 7nvx:6 (3.9) BS02 ZN ? GO:0000438 ... Q13888 33902107
    157406 7nvx:6 (3.9) BS03 ZN ? GO:0000438 ... Q13888 33902107
    157407 7nvy:3 (7.3) BS01 ZN ? GO:0000082 ... P51948 33902107
    157408 7nvy:3 (7.3) BS02 ZN ? GO:0000082 ... P51948 33902107
    157409 7nvy:4 (7.3) BS01 ZN ? GO:0000438 ... Q13889 33902107
    157410 7nvy:4 (7.3) BS02 ZN ? GO:0000438 ... Q13889 33902107
    157411 7nvy:6 (7.3) BS01 ZN ? GO:0000438 ... Q13888 33902107
    157412 7nvy:6 (7.3) BS02 ZN ? GO:0000438 ... Q13888 33902107
    157413 7nvy:6 (7.3) BS03 ZN ? GO:0000438 ... Q13888 33902107
    157414 7nvy:A (7.3) BS01 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157415 7nvy:A (7.3) BS02 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157416 7nvy:A (7.3) BS03 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157417 7nvy:B (7.3) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 33902107
    157418 7nvy:C (7.3) BS01 ZN ? GO:0000428 ... I3LCH3 33902107
    157419 7nvy:I (7.3) BS01 ZN ? GO:0000428 ... P60899 33902107
    157420 7nvy:I (7.3) BS02 ZN ? GO:0000428 ... P60899 33902107
    157421 7nvy:J (7.3) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33902107
    157422 7nvy:L (7.3) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33902107
    157423 7nvy:M (7.3) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33902107
    157424 7nvy:W (7.3) BS01 ZN ? GO:0001113 ... P29083 33902107
    157425 7nvz:3 (7.2) BS01 ZN ? GO:0000082 ... P51948 33902107
    157426 7nvz:3 (7.2) BS02 ZN ? GO:0000082 ... P51948 33902107
    157427 7nvz:4 (7.2) BS01 ZN ? GO:0000438 ... Q13889 33902107
    157428 7nvz:4 (7.2) BS02 ZN ? GO:0000438 ... Q13889 33902107
    157429 7nvz:6 (7.2) BS01 ZN ? GO:0000438 ... Q13888 33902107
    157430 7nvz:6 (7.2) BS02 ZN ? GO:0000438 ... Q13888 33902107
    157431 7nvz:6 (7.2) BS03 ZN ? GO:0000438 ... Q13888 33902107
    157432 7nvz:A (7.2) BS01 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157433 7nvz:A (7.2) BS02 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157434 7nvz:A (7.2) BS03 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157435 7nvz:B (7.2) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 33902107
    157436 7nvz:C (7.2) BS01 ZN ? GO:0000428 ... I3LCH3 33902107
    157437 7nvz:I (7.2) BS01 ZN ? GO:0000428 ... P60899 33902107
    157438 7nvz:I (7.2) BS02 ZN ? GO:0000428 ... P60899 33902107
    157439 7nvz:J (7.2) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33902107
    157440 7nvz:L (7.2) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33902107
    157441 7nvz:M (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33902107
    157442 7nvz:W (7.2) BS01 ZN ? GO:0001113 ... P29083 33902107
    157443 7nw0:4 (6.6) BS01 ZN ? GO:0000438 ... Q13889 33902107
    157444 7nw0:4 (6.6) BS02 ZN ? GO:0000438 ... Q13889 33902107
    157445 7nw0:6 (6.6) BS01 ZN ? GO:0000438 ... Q13888 33902107
    157446 7nw0:6 (6.6) BS02 ZN ? GO:0000438 ... Q13888 33902107
    157447 7nw0:6 (6.6) BS03 ZN ? GO:0000438 ... Q13888 33902107
    157448 7nw0:A (6.6) BS03 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157449 7nw0:A (6.6) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157450 7nw0:A (6.6) BS05 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 33902107
    157451 7nw0:B (6.6) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 33902107
    157452 7nw0:C (6.6) BS01 ZN ? GO:0000428 ... I3LCH3 33902107
    157453 7nw0:I (6.6) BS01 ZN ? GO:0000428 ... P60899 33902107
    157454 7nw0:I (6.6) BS02 ZN ? GO:0000428 ... P60899 33902107
    157455 7nw0:J (6.6) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33902107
    157456 7nw0:L (6.6) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33902107
    157457 7nw0:M (6.6) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33902107
    157458 7nw0:W (6.6) BS01 ZN ? GO:0001113 ... P29083 33902107
    157459 7nwg:B3 (3.8) BS02 MG ? GO:0003723 ... G1TL06 34157102
    157460 7nwg:B3 (3.8) BS03 MG ? GO:0003723 ... G1TL06 34157102
    157461 7nwg:F2 (3.8) BS02 MG N/A GO:0003723 ... N/A 34157102
    157462 7nwg:K2 (3.8) BS02 MG ? GO:0003723 ... A0A1S3APZ1 34157102
    157463 7nwg:M2 (3.8) BS02 MG ? GO:0003735 ... G1TRM4 34157102
    157464 7nwg:R3 (3.8) BS03 MG ? GO:0003723 ... Q3T0W9 34157102
    157465 7nwg:b2 (3.8) BS02 ZN ? GO:0003729 ... T0M5X4 34157102
    157466 7nwg:g3 (3.8) BS02 MG ? GO:0003735 ... G1TXG5 34157102
    157467 7nwg:g3 (3.8) BS03 ZN ? GO:0003735 ... G1TXG5 34157102
    157468 7nwg:j3 (3.8) BS03 ZN ? GO:0003723 ... U3KPD5 34157102
    157469 7nwg:m3 (3.8) BS02 ZN N/A GO:0003735 ... N/A 34157102
    157470 7nwg:o3 (3.8) BS03 ZN N/A GO:0003735 ... N/A 34157102
    157471 7nwg:p3 (3.8) BS02 ZN N/A GO:0003735 ... N/A 34157102
    157472 7nwh:aa (4.1) BS03 ZN ? GO:0003729 ... T0M5X4 34157102
    157473 7nwh:dd (4.1) BS02 ZN N/A GO:0003735 ... N/A 34157102
    157474 7nwh:j (4.1) BS03 ZN ? GO:0003723 ... U3KPD5 34157102
    157475 7nwh:jj (4.1) BS02 MG N/A GO:0003924 ... N/A 34157102
    157476 7nwh:m (4.1) BS02 ZN N/A GO:0003735 ... N/A 34157102
    157477 7nwh:o (4.1) BS02 MG N/A GO:0003735 ... N/A 34157102
    157478 7nwh:p (4.1) BS02 ZN N/A GO:0003735 ... N/A 34157102
    157479 7nwi:g (3.13) BS02 ZN ? GO:0003735 ... G1TXG5 34157102
    157480 7nwi:g (3.13) BS03 MG ? GO:0003735 ... G1TXG5 34157102
    157481 7nwi:j (3.13) BS03 ZN ? GO:0003723 ... U3KPD5 34157102
    157482 7nwi:m (3.13) BS02 ZN N/A GO:0003735 ... N/A 34157102
    157483 7nwi:o (3.13) BS02 ZN ? GO:0003735 ... A0A6P5P305 34157102
    157484 7nwi:p (3.13) BS02 ZN ? GO:0003735 ... G1SY53 34157102
    157485 7nwl:A (3.1) BS01 MN ? GO:0001525 ... P08648 33962943
    157486 7nwl:A (3.1) BS02 MN ? GO:0001525 ... P08648 33962943
    157487 7nwl:A (3.1) BS03 MN ? GO:0001525 ... P08648 33962943
    157488 7nwl:A (3.1) BS04 MN ? GO:0001525 ... P08648 33962943
    157489 7nwl:B (3.1) BS01 MN ? GO:0000082 ... P05556 33962943
    157490 7nwl:B (3.1) BS02 MN ? GO:0000082 ... P05556 33962943
    157491 7nwl:B (3.1) BS03 MN ? GO:0000082 ... P05556 33962943
    157492 7nwn:AAA (1.97) BS01 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157493 7nwn:AAA (1.97) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157494 7nwn:AAA (1.97) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157495 7nwo:AAA (2.7) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157496 7nwo:AAA (2.7) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157497 7nwo:AAA (2.7) BS04 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157498 7nwp:AAA (2.163) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157499 7nwp:AAA (2.163) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157500 7nwp:AAA (2.163) BS04 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157501 7nwq:AAA (2.231) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157502 7nwq:AAA (2.231) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157503 7nwq:AAA (2.231) BS04 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    157504 7nwt:f (2.66) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    157505 7nwt:i (2.66) BS02 MG ? GO:0003723 ... C3SR62 N/A
    157506 7nww:Z (3.05) BS03 ZN N/A GO:0003735 ... N/A 34994471
    157507 7nww:e (3.05) BS02 ZN ? GO:0002181 ... P0A7Q6 34994471
    157508 7nww:h (3.05) BS02 MG N/A GO:0003723 ... N/A 34994471
    157509 7nww:q (3.05) BS03 MG N/A GO:0003676 ... N/A 34994471
    157510 7nwx:A (1.8) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34278402
    157511 7nwy:AAA (1.807) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157512 7nwy:BBB (1.807) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157513 7nx4:A (3.0) BS01 ZN 2.7.10.1 N/A Q9UM73 34646012
    157514 7nxd:A (4.6) BS01 CA ? GO:0001525 ... P08648 33962943
    157515 7nxd:A (4.6) BS02 CA ? GO:0001525 ... P08648 33962943
    157516 7nxd:A (4.6) BS03 CA ? GO:0001525 ... P08648 33962943
    157517 7nxd:A (4.6) BS04 CA ? GO:0001525 ... P08648 33962943
    157518 7nxd:A (4.6) BS05 CA ? GO:0001525 ... P08648 33962943
    157519 7nxd:B (4.6) BS01 MG ? GO:0000082 ... P05556 33962943
    157520 7nxd:B (4.6) BS02 CA ? GO:0000082 ... P05556 33962943
    157521 7nxd:B (4.6) BS03 CA ? GO:0000082 ... P05556 33962943
    157522 7nxv:B (2.55) BS01 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    157523 7nxv:B (2.55) BS02 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    157524 7nxv:F (2.55) BS01 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    157525 7nxv:F (2.55) BS02 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    157526 7nxx:A (2.189) BS01 CU 1.15.1.1 GO:0000302 ... P00441 N/A
    157527 7nxx:A (2.189) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 N/A
    157528 7nyc:D (3.54) BS03 CA ? GO:0005576 ... P07358 34667172
    157529 7nyc:E (3.54) BS04 CA ? GO:0001848 ... P07357 34667172
    157530 7nyc:H (3.54) BS01 CA ? GO:0001906 ... P02748 34667172
    157531 7nyd:D (3.27) BS03 CA ? GO:0005576 ... P07358 34667172
    157532 7nyd:E (3.27) BS02 CA ? GO:0001848 ... P07357 34667172
    157533 7nyd:G (3.27) BS01 CA ? GO:0001906 ... P02748 34667172
    157534 7nyd:H (3.27) BS01 CA ? GO:0001906 ... P02748 34667172
    157535 7nyr:G (3.3) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    157536 7nyt:A (1.09) BS04 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    157537 7nyt:A (1.09) BS05 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    157538 7nyu:G (3.8) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    157539 7nyv:G (3.7) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    157540 7nz0:A (6.3) BS02 MG ? GO:0003677 ... A0A0F7LRY2 34739874
    157541 7nz1:G (2.1) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    157542 7nz5:A (1.9) BS02 ZN 2.3.1.169 GO:0003824 ... Q3ACS4 N/A
    157543 7nz5:B (1.9) BS03 ZN 2.3.1.169 GO:0003824 ... Q3ACS4 N/A
    157544 7nz7:A (2.96) BS01 ZN 3.5.4.33 GO:0002100 ... Q6P6J0 34057470
    157545 7nz7:B (2.96) BS01 ZN ? GO:0003824 ... Q6PAT0 34057470
    157546 7nz8:A (2.12) BS01 ZN 3.5.4.33 GO:0002100 ... Q6P6J0 34057470
    157547 7nz8:B (2.12) BS01 ZN ? GO:0003824 ... Q6PAT0 34057470
    157548 7nz9:A (1.99) BS01 ZN 3.5.4.33 GO:0002100 ... Q6P6J0 34057470
    157549 7nz9:B (1.99) BS01 ZN ? GO:0003824 ... Q6PAT0 34057470
    157550 7nzm:B (3.96) BS01 MN 3.1.3.16 GO:0016787 ... P62139 34625748
    157551 7nzo:AAA (1.67) BS01 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    157552 7nzo:BBB (1.67) BS01 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    157553 7nzp:AAA (1.345) BS02 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    157554 7nzp:BBB (1.345) BS02 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    157555 7nzq:AAA (1.57) BS02 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    157556 7nzr:A (1.284) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    157557 7nzs:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    157558 7nzt:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    157559 7nzu:A (1.24) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    157560 7nzw:A (1.45) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    157561 7nzx:A (1.33) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    157562 7o07:A (1.2) BS02 MG ? GO:0000122 ... P31947 34476063
    157563 7o0c:A (2.8) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157564 7o0c:A (2.8) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157565 7o0c:B (2.8) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157566 7o0c:B (2.8) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157567 7o0n:A (1.89) BS03 MG ? GO:0003677 ... Q1CVJ4 34562373
    157568 7o0o:A (1.45) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 34637298
    157569 7o0o:A (1.45) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 34637298
    157570 7o0q:B (2.49) BS01 MG ? N/A Q9HCE5 N/A
    157571 7o0u:L (2.35) BS06 FE ? GO:0009772 ... A0A143BHR2 35171663
    157572 7o0u:M (2.35) BS05 FE N/A GO:0009772 ... N/A 35171663
    157573 7o0v:L (2.5) BS07 FE ? GO:0009772 ... A0A143BHR2 35171663
    157574 7o0v:M (2.5) BS04 FE N/A GO:0009772 ... N/A 35171663
    157575 7o0w:L (2.47) BS07 FE ? GO:0009772 ... A0A143BHR2 35171663
    157576 7o0w:M (2.47) BS05 FE N/A GO:0009772 ... N/A 35171663
    157577 7o0x:L (2.44) BS07 FE ? GO:0009772 ... A0A143BHR2 35171663
    157578 7o0x:M (2.44) BS04 FE N/A GO:0009772 ... N/A 35171663
    157579 7o0y:A (3.3) BS01 MG ? N/A P19843 35896743
    157580 7o10:A (3.6) BS01 MG ? N/A P19843 35896743
    157581 7o11:A (3.7) BS01 MG ? N/A P19843 35896743
    157582 7o12:A (3.7) BS01 MG ? N/A P19843 35896743
    157583 7o12:B (3.7) BS01 MG ? GO:0005524 ... P19844 35896743
    157584 7o12:C (3.7) BS01 MG ? GO:0005524 ... P19844 35896743
    157585 7o13:A (3.6) BS01 MG ? N/A P19843 35896743
    157586 7o14:A (-1.00) BS01 MG ? N/A P19843 35896743
    157587 7o15:A (-1.00) BS01 MG ? N/A P19843 35896743
    157588 7o16:A (-1.00) BS01 MG ? N/A P19843 35896743
    157589 7o17:B (4.5) BS02 MG ? GO:0005524 ... P19844 35896743
    157590 7o19:AB (2.9) BS02 ZN ? GO:0000028 ... P0A7V0 34504068
    157591 7o19:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 34504068
    157592 7o19:BI (2.9) BS03 ZN ? GO:0002181 ... P0A7M9 34504068
    157593 7o1a:AB (2.4) BS02 ZN ? GO:0000028 ... P0A7V0 34504068
    157594 7o1a:B4 (2.4) BS02 ZN ? GO:0002181 ... P0A7Q6 34504068
    157595 7o1a:BD (2.4) BS02 MG ? GO:0000027 ... P60438 34504068
    157596 7o1a:BI (2.4) BS02 ZN ? GO:0002181 ... P0A7M9 34504068
    157597 7o1a:BL (2.4) BS02 MG ? GO:0002181 ... P02413 34504068
    157598 7o1b:A (3.08) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157599 7o1b:A (3.08) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157600 7o1b:B (3.08) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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