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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156801 7n31:LD (2.69) BS02 MG ? GO:0001070 ... P60723 34234344
    156802 7n31:LX (2.69) BS02 MG ? GO:0000027 ... P60624 34234344
    156803 7n31:Le (2.69) BS02 ZN ? GO:0002181 ... P0A7M9 34234344
    156804 7n31:Lj (2.69) BS02 ZN ? GO:0002181 ... P0A7Q6 34234344
    156805 7n3z:A (1.99) BS01 MG 3.1.11.2 GO:0003677 ... P38207 36198268
    156806 7n47:A (2.37) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156807 7n47:A (2.37) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156808 7n4e:D (3.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35653571
    156809 7n4e:D (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35653571
    156810 7n4e:D (3.8) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 35653571
    156811 7n4g:A (1.93) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    156812 7n4g:C (1.93) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    156813 7n4p:A (2.097) BS01 CA ? GO:0005509 ... R4GAX0 36911992
    156814 7n4p:A (2.097) BS02 CA ? GO:0005509 ... R4GAX0 36911992
    156815 7n4p:A (2.097) BS03 CA ? GO:0005509 ... R4GAX0 36911992
    156816 7n4p:A (2.097) BS04 CA ? GO:0005509 ... R4GAX0 36911992
    156817 7n4p:A (2.097) BS05 CA ? GO:0005509 ... R4GAX0 36911992
    156818 7n4p:A (2.097) BS06 CA ? GO:0005509 ... R4GAX0 36911992
    156819 7n55:A (2.33) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156820 7n55:A (2.33) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156821 7n5s:A (2.86) BS03 ZN ? N/A O95365 34592153
    156822 7n5s:A (2.86) BS04 ZN ? N/A O95365 34592153
    156823 7n5s:A (2.86) BS05 ZN ? N/A O95365 34592153
    156824 7n5s:A (2.86) BS06 ZN ? N/A O95365 34592153
    156825 7n5t:A (2.9) BS03 ZN ? N/A O95365 34592153
    156826 7n5t:A (2.9) BS04 ZN ? N/A O95365 34592153
    156827 7n5t:A (2.9) BS05 ZN ? N/A O95365 34592153
    156828 7n5t:A (2.9) BS06 ZN ? N/A O95365 34592153
    156829 7n5u:A (2.86) BS03 ZN ? N/A O95365 36626981
    156830 7n5u:A (2.86) BS04 ZN ? N/A O95365 36626981
    156831 7n5u:A (2.86) BS05 ZN ? N/A O95365 36626981
    156832 7n5v:A (3.08) BS04 ZN ? N/A O95365 36626981
    156833 7n5v:A (3.08) BS05 ZN ? N/A O95365 36626981
    156834 7n5v:B (3.08) BS03 ZN ? N/A O95365 36626981
    156835 7n5v:B (3.08) BS04 ZN ? N/A O95365 36626981
    156836 7n5v:B (3.08) BS05 ZN ? N/A O95365 36626981
    156837 7n5v:B (3.08) BS06 ZN ? N/A O95365 36626981
    156838 7n5v:F (3.08) BS04 ZN ? N/A O95365 36626981
    156839 7n5v:F (3.08) BS05 ZN ? N/A O95365 36626981
    156840 7n5w:A (2.24) BS03 ZN ? N/A O95365 36626981
    156841 7n5w:A (2.24) BS04 ZN ? N/A O95365 36626981
    156842 7n5w:A (2.24) BS05 ZN ? N/A O95365 36626981
    156843 7n68:A (2.26) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156844 7n68:A (2.26) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156845 7n70:A (2.8) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715013
    156846 7n72:A (2.5) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715013
    156847 7n73:A (2.9) BS03 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715013
    156848 7n77:A (3.2) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715013
    156849 7n78:A (3.0) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715013
    156850 7n7g:A (2.0) BS01 MN ? GO:0005737 ... F1C939 34882867
    156851 7n7g:B (2.0) BS02 MN ? GO:0005737 ... F1C939 34882867
    156852 7n7v:A (1.99) BS01 FE2 ? GO:0016491 ... C6ZCS6 N/A
    156853 7n7v:B (1.99) BS01 FE2 ? GO:0016491 ... C6ZCS6 N/A
    156854 7n86:A (3.175) BS01 CA ? GO:0005509 ... Q9BYE9 34871294
    156855 7n86:A (3.175) BS02 CA ? GO:0005509 ... Q9BYE9 34871294
    156856 7n86:A (3.175) BS03 CA ? GO:0005509 ... Q9BYE9 34871294
    156857 7n86:B (3.175) BS01 CA ? GO:0005509 ... Q9BYE9 34871294
    156858 7n86:B (3.175) BS02 CA ? GO:0005509 ... Q9BYE9 34871294
    156859 7n86:B (3.175) BS03 CA ? GO:0005509 ... Q9BYE9 34871294
    156860 7n86:C (3.175) BS01 CA ? GO:0005509 ... Q9BYE9 34871294
    156861 7n86:C (3.175) BS02 CA ? GO:0005509 ... Q9BYE9 34871294
    156862 7n86:C (3.175) BS03 CA ? GO:0005509 ... Q9BYE9 34871294
    156863 7n86:C (3.175) BS04 CA ? GO:0005509 ... Q9BYE9 34871294
    156864 7n86:D (3.175) BS01 CA ? GO:0005509 ... Q9BYE9 34871294
    156865 7n86:D (3.175) BS02 CA ? GO:0005509 ... Q9BYE9 34871294
    156866 7n86:D (3.175) BS03 CA ? GO:0005509 ... Q9BYE9 34871294
    156867 7n86:D (3.175) BS04 CA ? GO:0005509 ... Q9BYE9 34871294
    156868 7n88:B (3.7) BS01 FE 3.4.21.- GO:0001503 ... P02788 34751649
    156869 7n88:B (3.7) BS02 FE 3.4.21.- GO:0001503 ... P02788 34751649
    156870 7n8b:AB (3.05) BS02 MG ? GO:0000027 ... P14126 35489333
    156871 7n8b:Aa (3.05) BS02 MG ? GO:0002181 ... P02406 35489333
    156872 7n8b:Ae (3.05) BS02 MG ? GO:0002181 ... P38061 35489333
    156873 7n8b:Ae (3.05) BS03 MG ? GO:0002181 ... P38061 35489333
    156874 7n8b:Af (3.05) BS02 MG ? GO:0000027 ... P05744 35489333
    156875 7n8b:Ao (3.05) BS02 ZN ? GO:0002181 ... P0CX27 35489333
    156876 7n8b:Bb (3.05) BS02 ZN ? GO:0000028 ... P35997 35489333
    156877 7n8f:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156878 7n8f:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156879 7n8o:A (1.93) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 34937700
    156880 7n8o:D (1.93) BS01 FE2 1.10.3.9 GO:0005506 ... P09192 34937700
    156881 7n8o:K (1.93) BS03 CA ? GO:0005737 ... P15819 34937700
    156882 7n8o:U (1.93) BS01 CA ? GO:0009523 ... Q55332 34937700
    156883 7n8o:V (1.93) BS02 CA ? GO:0005506 ... Q55013 34937700
    156884 7n8o:a (1.93) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 34937700
    156885 7n8o:d (1.93) BS01 FE2 1.10.3.9 GO:0005506 ... P09192 34937700
    156886 7n8o:k (1.93) BS03 CA ? GO:0005737 ... P15819 34937700
    156887 7n8o:u (1.93) BS01 CA ? GO:0009523 ... Q55332 34937700
    156888 7n8o:v (1.93) BS02 CA ? GO:0005506 ... Q55013 34937700
    156889 7n9k:A (2.72) BS01 K ? GO:0005242 ... D9N164 35079013
    156890 7n9l:A (2.4) BS01 K ? GO:0005242 ... D9N164 35079013
    156891 7n9z:F (2.19) BS04 CU 7.1.1.3 GO:0004129 ... P0ABI8 34417297
    156892 7n9z:G (2.19) BS01 ZN ? GO:0004129 ... P0ABJ1 34417297
    156893 7na9:A (1.76) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 34990480
    156894 7nac:g (3.04) BS02 ZN ? GO:0002181 ... P87262 36482249
    156895 7nac:j (3.04) BS03 ZN ? GO:0000448 ... P49166 36482249
    156896 7nad:g (3.04) BS02 ZN ? GO:0002181 ... P87262 36482249
    156897 7nar:B (3.0) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    156898 7nar:W (3.0) BS02 ZN 3.6.1.- GO:0000028 ... P39286 34088665
    156899 7nar:W (3.0) BS04 MG 3.6.1.- GO:0000028 ... P39286 34088665
    156900 7nar:W (3.0) BS05 MG 3.6.1.- GO:0000028 ... P39286 34088665
    156901 7nat:B (3.59) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    156902 7nau:B (3.78) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    156903 7nav:B (4.8) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    156904 7nax:B (2.96) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    156905 7nb2:AAA (2.4) BS02 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 34416377
    156906 7nb2:BBB (2.4) BS02 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 34416377
    156907 7nb3:AAA (2.0) BS02 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 34416377
    156908 7nb3:BBB (2.0) BS02 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 34416377
    156909 7nb8:A (4.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34375637
    156910 7nb8:B (4.4) BS02 MG ? GO:0000226 ... P02554 34375637
    156911 7nba:B (4.0) BS02 MG ? GO:0000226 ... P02554 34375637
    156912 7nba:K (4.0) BS02 MG ? GO:0003777 ... O77382 34375637
    156913 7nbb:C (1.55) BS01 MG ? N/A P0CG47 38977901
    156914 7nbc:AAA (1.71) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156915 7nbc:AAA (1.71) BS03 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156916 7nbc:BBB (1.71) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156917 7nbc:BBB (1.71) BS03 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156918 7nbc:CCC (1.71) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156919 7nbc:DDD (1.71) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156920 7nbd:AAA (1.865) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156921 7nbd:AAA (1.865) BS03 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156922 7nbd:BBB (1.865) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156923 7nbd:BBB (1.865) BS03 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156924 7nbd:CCC (1.865) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156925 7nbd:DDD (1.865) BS03 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156926 7nbd:DDD (1.865) BS04 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156927 7nbf:AAA (1.6) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156928 7nbf:AAA (1.6) BS03 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156929 7nbf:BBB (1.6) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156930 7nbf:BBB (1.6) BS03 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156931 7nbf:CCC (1.6) BS03 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156932 7nbf:DDD (1.6) BS03 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156933 7nbg:AAA (1.53) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156934 7nbg:BBB (1.53) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156935 7nbg:BBB (1.53) BS04 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156936 7nbg:CCC (1.53) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156937 7nbg:DDD (1.53) BS02 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156938 7nbg:DDD (1.53) BS04 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156939 7nbh:AAA (1.77) BS01 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156940 7nbh:BBB (1.77) BS01 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156941 7nbh:CCC (1.77) BS01 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156942 7nbh:CCC (1.77) BS02 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156943 7nbh:DDD (1.77) BS01 CA 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156944 7nbh:DDD (1.77) BS04 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    156945 7nbu:3 (3.11) BS02 ZN ? GO:0002181 ... P0A7Q6 35552387
    156946 7nbu:4 (3.11) BS03 ZN N/A N/A N/A 35552387
    156947 7nbu:c (3.11) BS02 MG ? GO:0000027 ... P60422 35552387
    156948 7nbu:c (3.11) BS03 MG ? GO:0000027 ... P60422 35552387
    156949 7nc4:A (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... P43166 34216985
    156950 7nd1:A (-1.00) BS01 ZN 2.3.2.27 GO:0000151 ... Q99496 34155404
    156951 7nd1:A (-1.00) BS02 ZN 2.3.2.27 GO:0000151 ... Q99496 34155404
    156952 7nd1:H (-1.00) BS01 ZN ? N/A P35226 34155404
    156953 7nd1:H (-1.00) BS02 ZN ? N/A P35226 34155404
    156954 7ndg:A (5.98) BS01 CA ? N/A O95631 33740419
    156955 7ndg:D (5.98) BS01 CA ? N/A O95631 33740419
    156956 7ndg:G (5.98) BS01 CA ? N/A O95631 33740419
    156957 7ndi:B (2.875) BS01 MG 3.1.-.- N/A Q5DTV4 33950203
    156958 7ndj:B (1.649) BS02 ZN 3.1.-.- N/A Q5DTV4 33950203
    156959 7ne0:A (3.25) BS03 CA ? N/A O95631 33740419
    156960 7ne1:A (3.15) BS03 CA ? N/A O95631 33740419
    156961 7ne3:A (2.26) BS03 ZN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156962 7ne3:A (2.26) BS04 ZN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156963 7ne3:A (2.26) BS05 ZN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156964 7ne3:A (2.26) BS06 FE2 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156965 7ne6:A (2.3) BS03 ZN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156966 7ne6:A (2.3) BS04 ZN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156967 7ne6:A (2.3) BS05 ZN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156968 7ne6:A (2.3) BS06 MN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    156969 7ne9:AAA (2.1) BS01 ZN ? GO:0000976 ... Q7U3N0 35681030
    156970 7ne9:AAA (2.1) BS02 ZN ? GO:0000976 ... Q7U3N0 35681030
    156971 7ne9:BBB (2.1) BS01 ZN ? GO:0000976 ... Q7U3N0 35681030
    156972 7ne9:BBB (2.1) BS02 ZN ? GO:0000976 ... Q7U3N0 35681030
    156973 7ne9:BBB (2.1) BS03 ZN ? GO:0000976 ... Q7U3N0 35681030
    156974 7ne9:CCC (2.1) BS01 ZN ? GO:0000976 ... Q7U3N0 35681030
    156975 7ne9:CCC (2.1) BS02 ZN ? GO:0000976 ... Q7U3N0 35681030
    156976 7ne9:DDD (2.1) BS01 ZN ? GO:0000976 ... Q7U3N0 35681030
    156977 7ne9:DDD (2.1) BS02 ZN ? GO:0000976 ... Q7U3N0 35681030
    156978 7nee:A (2.55) BS02 ZN 3.4.17.20 GO:0003331 ... Q96IY4 33764059
    156979 7nef:A (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156980 7nef:A (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156981 7nef:B (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156982 7nef:B (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156983 7nef:C (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156984 7nef:C (1.51) BS03 CA ? GO:0030246 ... Q9HYN5 34977576
    156985 7nef:D (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156986 7nef:D (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156987 7nef:E (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156988 7nef:E (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156989 7nef:F (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156990 7nef:F (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156991 7nef:G (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156992 7nef:G (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156993 7nef:H (1.51) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    156994 7nef:H (1.51) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156995 7nem:L (1.35) BS04 MG 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    156996 7nem:M (1.35) BS04 MG 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    156997 7neu:A (2.8) BS02 ZN 3.4.17.20 GO:0003331 ... Q96IY4 33764059
    156998 7new:A (2.02) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    156999 7new:A (2.02) BS03 CA ? GO:0030246 ... Q9HYN5 34977576
    157000 7new:B (2.02) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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