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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    156401 7mo2:D (1.65) BS01 ZN ? N/A P49791 35679405
    156402 7mo3:B (2.05) BS01 ZN ? N/A P49791 35679405
    156403 7mo3:D (2.05) BS01 ZN ? N/A P49791 35679405
    156404 7mo4:B (2.4) BS01 ZN ? N/A P49791 35679405
    156405 7mo4:D (2.4) BS01 ZN ? N/A P49791 35679405
    156406 7mo5:B (1.55) BS01 ZN ? N/A P49791 35679405
    156407 7mos:A (1.704) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156408 7mos:A (1.704) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156409 7mos:A (1.704) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156410 7mos:B (1.704) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156411 7mos:B (1.704) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156412 7mos:B (1.704) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156413 7mos:C (1.704) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156414 7mos:C (1.704) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156415 7mos:C (1.704) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156416 7mot:A (1.54) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156417 7mot:A (1.54) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156418 7mot:A (1.54) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156419 7mot:B (1.54) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156420 7mot:B (1.54) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156421 7mot:B (1.54) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156422 7mot:C (1.54) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156423 7mot:C (1.54) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156424 7mot:C (1.54) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156425 7mox:A (1.69) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156426 7mox:A (1.69) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156427 7mox:A (1.69) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156428 7mox:B (1.69) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156429 7mox:B (1.69) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156430 7mox:B (1.69) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156431 7mox:C (1.69) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156432 7mox:C (1.69) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156433 7mox:C (1.69) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156434 7moy:A (1.78) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156435 7moy:A (1.78) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156436 7moy:A (1.78) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156437 7moy:B (1.78) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156438 7moy:B (1.78) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156439 7moy:B (1.78) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156440 7moy:C (1.78) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156441 7moy:C (1.78) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156442 7moy:C (1.78) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156443 7moz:A (1.543) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156444 7moz:A (1.543) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156445 7moz:A (1.543) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156446 7moz:B (1.543) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156447 7moz:B (1.543) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156448 7moz:B (1.543) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156449 7moz:C (1.543) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156450 7moz:C (1.543) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156451 7moz:C (1.543) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 34091041
    156452 7mpf:A (2.8) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156453 7mpf:A (2.8) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    156454 7mpi:AA (3.05) BS03 MG ? GO:0002181 ... P0CX45 35489333
    156455 7mpi:AB (3.05) BS02 MG ? GO:0000027 ... P14126 35489333
    156456 7mpi:AN (3.05) BS03 MG ? GO:0002181 ... P05748 35489333
    156457 7mpi:AN (3.05) BS04 MG ? GO:0002181 ... P05748 35489333
    156458 7mpi:AO (3.05) BS02 MG ? GO:0000470 ... P26784 35489333
    156459 7mpi:AP (3.05) BS03 MG ? GO:0000448 ... P05740 35489333
    156460 7mpi:AX (3.05) BS03 MG ? GO:0003735 ... P04456 35489333
    156461 7mpi:Ae (3.05) BS02 MG ? GO:0002181 ... P38061 35489333
    156462 7mpi:Ae (3.05) BS03 MG ? GO:0002181 ... P38061 35489333
    156463 7mpi:Af (3.05) BS02 MG ? GO:0000027 ... P05744 35489333
    156464 7mpi:Af (3.05) BS03 MG ? GO:0000027 ... P05744 35489333
    156465 7mpi:Ah (3.05) BS03 MG ? GO:0000463 ... P0CX84 35489333
    156466 7mpi:Aj (3.05) BS03 MG ? GO:0000448 ... P49166 35489333
    156467 7mpi:Ao (3.05) BS02 ZN ? GO:0002181 ... P0CX27 35489333
    156468 7mpi:BD (3.05) BS02 MG ? GO:0000054 ... P05750 35489333
    156469 7mpi:Bb (3.05) BS02 ZN ? GO:0000028 ... P35997 35489333
    156470 7mpj:AA (2.7) BS02 MG ? GO:0002181 ... P0CX45 35489333
    156471 7mpj:AA (2.7) BS03 MG ? GO:0002181 ... P0CX45 35489333
    156472 7mpj:AA (2.7) BS04 MG ? GO:0002181 ... P0CX45 35489333
    156473 7mpj:AB (2.7) BS02 MG ? GO:0000027 ... P14126 35489333
    156474 7mpj:AB (2.7) BS03 MG ? GO:0000027 ... P14126 35489333
    156475 7mpj:AC (2.7) BS03 MG ? GO:0002181 ... P10664 35489333
    156476 7mpj:AC (2.7) BS04 MG ? GO:0002181 ... P10664 35489333
    156477 7mpj:AC (2.7) BS05 MG ? GO:0002181 ... P10664 35489333
    156478 7mpj:AC (2.7) BS06 MG ? GO:0002181 ... P10664 35489333
    156479 7mpj:AC (2.7) BS07 MG ? GO:0002181 ... P10664 35489333
    156480 7mpj:AF (2.7) BS03 MG ? GO:0000463 ... P05737 35489333
    156481 7mpj:AF (2.7) BS04 MG ? GO:0000463 ... P05737 35489333
    156482 7mpj:AF (2.7) BS05 MG ? GO:0000463 ... P05737 35489333
    156483 7mpj:AI (2.7) BS03 MG ? GO:0000027 ... P41805 35489333
    156484 7mpj:AL (2.7) BS03 MG ? GO:0002181 ... Q12690 35489333
    156485 7mpj:AN (2.7) BS03 MG ? GO:0002181 ... P05748 35489333
    156486 7mpj:AN (2.7) BS04 MG ? GO:0002181 ... P05748 35489333
    156487 7mpj:AN (2.7) BS05 MG ? GO:0002181 ... P05748 35489333
    156488 7mpj:AN (2.7) BS06 MG ? GO:0002181 ... P05748 35489333
    156489 7mpj:AN (2.7) BS07 MG ? GO:0002181 ... P05748 35489333
    156490 7mpj:AO (2.7) BS02 MG ? GO:0000470 ... P26784 35489333
    156491 7mpj:AP (2.7) BS03 MG ? GO:0000448 ... P05740 35489333
    156492 7mpj:AP (2.7) BS04 MG ? GO:0000448 ... P05740 35489333
    156493 7mpj:AQ (2.7) BS02 MG ? GO:0002181 ... P0CX49 35489333
    156494 7mpj:AQ (2.7) BS03 MG ? GO:0002181 ... P0CX49 35489333
    156495 7mpj:AQ (2.7) BS04 MG ? GO:0002181 ... P0CX49 35489333
    156496 7mpj:AR (2.7) BS03 MG ? GO:0002181 ... P0CX82 35489333
    156497 7mpj:AR (2.7) BS04 MG ? GO:0002181 ... P0CX82 35489333
    156498 7mpj:AR (2.7) BS05 MG ? GO:0002181 ... P0CX82 35489333
    156499 7mpj:AR (2.7) BS06 MG ? GO:0002181 ... P0CX82 35489333
    156500 7mpj:AS (2.7) BS03 MG ? GO:0002181 ... P0CX23 35489333
    156501 7mpj:AS (2.7) BS04 MG ? GO:0002181 ... P0CX23 35489333
    156502 7mpj:AV (2.7) BS02 MG ? GO:0002181 ... P0CX41 35489333
    156503 7mpj:AX (2.7) BS03 MG ? GO:0003735 ... P04456 35489333
    156504 7mpj:Aa (2.7) BS02 MG ? GO:0002181 ... P02406 35489333
    156505 7mpj:Aa (2.7) BS03 MG ? GO:0002181 ... P02406 35489333
    156506 7mpj:Ab (2.7) BS02 MG ? GO:0002181 ... P05747 35489333
    156507 7mpj:Ab (2.7) BS03 MG ? GO:0002181 ... P05747 35489333
    156508 7mpj:Ad (2.7) BS02 MG ? GO:0002181 ... P0C2H8 35489333
    156509 7mpj:Ad (2.7) BS03 MG ? GO:0002181 ... P0C2H8 35489333
    156510 7mpj:Ae (2.7) BS02 MG ? GO:0002181 ... P38061 35489333
    156511 7mpj:Ae (2.7) BS03 MG ? GO:0002181 ... P38061 35489333
    156512 7mpj:Ae (2.7) BS04 MG ? GO:0002181 ... P38061 35489333
    156513 7mpj:Af (2.7) BS02 MG ? GO:0000027 ... P05744 35489333
    156514 7mpj:Af (2.7) BS03 MG ? GO:0000027 ... P05744 35489333
    156515 7mpj:Ah (2.7) BS03 MG ? GO:0000463 ... P0CX84 35489333
    156516 7mpj:Aj (2.7) BS03 MG ? GO:0000448 ... P49166 35489333
    156517 7mpj:Aj (2.7) BS04 MG ? GO:0000448 ... P49166 35489333
    156518 7mpj:Aj (2.7) BS05 MG ? GO:0000448 ... P49166 35489333
    156519 7mpj:Aj (2.7) BS06 MG ? GO:0000448 ... P49166 35489333
    156520 7mpj:Al (2.7) BS03 MG ? GO:0002181 ... P04650 35489333
    156521 7mpj:Ao (2.7) BS02 MG ? GO:0002181 ... P0CX27 35489333
    156522 7mpj:Ao (2.7) BS03 ZN ? GO:0002181 ... P0CX27 35489333
    156523 7mpj:BE (2.7) BS02 MG ? GO:0002181 ... P0CX35 35489333
    156524 7mpj:Bb (2.7) BS02 ZN ? GO:0000028 ... P35997 35489333
    156525 7mpp:A (2.0) BS02 MG ? GO:0003676 ... X5MEI1 34533457
    156526 7mpp:C (2.0) BS02 MG ? GO:0003676 ... X5MEI1 34533457
    156527 7mpp:E (2.0) BS03 MG ? GO:0003676 ... X5MEI1 34533457
    156528 7mpp:G (2.0) BS03 MG ? GO:0003676 ... X5MEI1 34533457
    156529 7mpp:I (2.0) BS03 MG ? GO:0003676 ... X5MEI1 34533457
    156530 7mpp:K (2.0) BS04 MG ? GO:0003676 ... X5MEI1 34533457
    156531 7mpp:M (2.0) BS03 MG ? GO:0003676 ... X5MEI1 34533457
    156532 7mpp:O (2.0) BS04 MG ? GO:0003676 ... X5MEI1 34533457
    156533 7mpq:A (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    156534 7mpq:A (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    156535 7mpq:C (2.35) BS02 MN ? GO:0003676 ... X5MEI1 34533457
    156536 7mpq:C (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    156537 7mpq:E (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    156538 7mpq:E (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    156539 7mpq:G (2.35) BS02 MN ? GO:0003676 ... X5MEI1 34533457
    156540 7mpq:G (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    156541 7mpq:I (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    156542 7mpq:I (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    156543 7mpq:K (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    156544 7mpq:K (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    156545 7mpq:M (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    156546 7mpq:M (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    156547 7mpq:O (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    156548 7mpq:O (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    156549 7mpt:A (1.75) BS01 MG N/A GO:0003676 ... N/A 34533457
    156550 7mpt:A (1.75) BS02 MG N/A GO:0003676 ... N/A 34533457
    156551 7mpt:B (1.75) BS01 MG N/A GO:0003676 ... N/A 34533457
    156552 7mpt:B (1.75) BS02 MG N/A GO:0003676 ... N/A 34533457
    156553 7mq8:NH (3.6) BS03 MG ? GO:0000794 ... Q9H6R4 34516797
    156554 7mq8:NQ (3.6) BS02 ZN ? GO:0000028 ... P42677 34516797
    156555 7mq8:NT (3.6) BS02 ZN N/A GO:0003735 ... N/A 34516797
    156556 7mq8:SI (3.6) BS05 MG N/A GO:0005525 ... N/A 34516797
    156557 7mq8:SL (3.6) BS04 ZN ? GO:0003723 ... Q9Y324 34516797
    156558 7mq9:NQ (3.87) BS02 ZN ? GO:0000028 ... P42677 34516797
    156559 7mq9:SI (3.87) BS06 MG ? GO:0000462 ... Q14692 34516797
    156560 7mq9:SL (3.87) BS04 ZN ? GO:0003723 ... Q9Y324 34516797
    156561 7mqa:NQ (2.7) BS02 ZN ? GO:0000028 ... P42677 34516797
    156562 7mqa:NT (2.7) BS02 ZN ? GO:0002181 ... P62979 34516797
    156563 7mqa:SI (2.7) BS04 MG ? GO:0000462 ... Q14692 34516797
    156564 7mqa:SL (2.7) BS02 ZN ? GO:0003723 ... Q9Y324 34516797
    156565 7mqq:A (1.15) BS01 MG ? GO:0046872 ... A0A5B0MRS6 35107838
    156566 7mqq:A (1.15) BS02 MG ? GO:0046872 ... A0A5B0MRS6 35107838
    156567 7mqu:A (-1.00) BS02 MG 3.6.5.2 GO:0003924 ... P01116 34176062
    156568 7mqx:A (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156569 7mqx:B (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156570 7mqx:C (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156571 7mqx:D (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156572 7mqx:E (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156573 7mqx:F (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156574 7mqx:G (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156575 7mqx:H (1.914) BS01 MG 5.1.2.2 GO:0000287 ... P11444 34339165
    156576 7ms5:A (1.98) BS01 ZN 3.4.19.12 GO:0008270 ... P45974 34648286
    156577 7ms5:B (1.98) BS01 ZN 3.4.19.12 GO:0008270 ... P45974 34648286
    156578 7ms5:B (1.98) BS03 CA 3.4.19.12 GO:0008270 ... P45974 34648286
    156579 7ms6:A (1.55) BS02 ZN 3.4.19.12 GO:0008270 ... P45974 34648286
    156580 7ms7:A (1.45) BS01 ZN 3.4.19.12 GO:0008270 ... P45974 34648286
    156581 7ms7:B (1.45) BS01 ZN 3.4.19.12 GO:0008270 ... P45974 34648286
    156582 7msc:1 (2.97) BS02 ZN ? GO:0003735 ... P9WH95 35064151
    156583 7msc:4 (2.97) BS02 ZN ? GO:0003735 ... P9WH89 35064151
    156584 7msc:6 (2.97) BS02 ZN ? GO:0003735 ... P9WHA1 35064151
    156585 7msc:n (2.97) BS02 ZN ? GO:0003735 ... P9WH57 35064151
    156586 7msc:x (2.97) BS06 MG 3.6.1.- GO:0000049 ... P9WQK3 35064151
    156587 7msh:1 (3.23) BS02 ZN ? GO:0003735 ... P9WH95 35064151
    156588 7msh:4 (3.23) BS02 ZN ? GO:0003735 ... P9WH89 35064151
    156589 7msh:6 (3.23) BS02 ZN ? GO:0003735 ... P9WHA1 35064151
    156590 7msh:n (3.23) BS02 ZN ? GO:0003735 ... P9WH57 35064151
    156591 7msh:r (3.23) BS02 ZN ? GO:0003735 ... P9WH49 35064151
    156592 7msh:x (3.23) BS06 MG 3.6.1.- GO:0000049 ... P9WQK3 35064151
    156593 7msh:x (3.23) BS07 MG 3.6.1.- GO:0000049 ... P9WQK3 35064151
    156594 7msk:A (2.06) BS01 MG N/A GO:0018240 ... N/A 34283964
    156595 7msk:B (2.06) BS01 MG N/A GO:0018240 ... N/A 34283964
    156596 7msm:4 (2.79) BS02 ZN ? GO:0003735 ... P9WH89 35064151
    156597 7msm:6 (2.79) BS02 ZN ? GO:0003735 ... P9WHA1 35064151
    156598 7msm:X (2.79) BS02 ZN ? GO:0003735 ... P0DV54 35064151
    156599 7msm:n (2.79) BS02 ZN ? GO:0003735 ... P9WH57 35064151
    156600 7msm:r (2.79) BS02 ZN ? GO:0003735 ... P9WH49 35064151
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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