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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    155801 7mc5:A (1.64) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0000175 ... P0DTD1 35165203
    155802 7mc5:A (1.64) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0000175 ... P0DTD1 35165203
    155803 7mc5:M (1.64) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 35165203
    155804 7mc5:M (1.64) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 35165203
    155805 7mc6:A (2.1) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0000175 ... P0DTD1 35165203
    155806 7mc6:A (2.1) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0000175 ... P0DTD1 35165203
    155807 7mc6:A (2.1) BS03 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0000175 ... P0DTD1 35165203
    155808 7mc6:M (2.1) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 35165203
    155809 7mc6:M (2.1) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 35165203
    155810 7mc9:A (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155811 7mc9:A (3.099) BS02 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155812 7mc9:C (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155813 7mc9:C (3.099) BS03 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155814 7mc9:E (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155815 7mc9:E (3.099) BS02 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155816 7mc9:E (3.099) BS03 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155817 7mc9:G (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155818 7mc9:G (3.099) BS02 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155819 7mc9:I (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155820 7mc9:K (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155821 7mc9:M (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155822 7mc9:O (3.099) BS01 ZN 3.4.19.12 GO:0006508 ... A0A059VJE6 N/A
    155823 7mca:E (3.6) BS04 MG ? GO:0000808 ... P50874 34162887
    155824 7mci:B (1.65) BS02 CA 1.18.6.1 GO:0005524 ... P07329 N/A
    155825 7mci:B (1.65) BS03 CA 1.18.6.1 GO:0005524 ... P07329 N/A
    155826 7mci:D (1.65) BS01 CA 1.18.6.1 GO:0005524 ... P07329 N/A
    155827 7mci:D (1.65) BS03 CA 1.18.6.1 GO:0005524 ... P07329 N/A
    155828 7mcj:A (1.8) BS02 MG 2.1.1.- GO:0005737 ... Q6MX39 N/A
    155829 7mcj:B (1.8) BS02 MG 2.1.1.- GO:0005737 ... Q6MX39 N/A
    155830 7mcr:A (1.9) BS01 MG 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 N/A
    155831 7md2:C (3.1) BS02 MG ? GO:0005524 ... N/A N/A
    155832 7md7:10 (2.8) BS03 MG ? GO:0003735 ... P60493 33916420
    155833 7md7:10 (2.8) BS04 MG ? GO:0003735 ... P60493 33916420
    155834 7md7:11 (2.8) BS02 MG ? GO:0003735 ... P60494 33916420
    155835 7md7:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 33916420
    155836 7md7:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 33916420
    155837 7md7:13 (2.8) BS05 MG ? GO:0003735 ... Q5SHQ6 33916420
    155838 7md7:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 33916420
    155839 7md7:15 (2.8) BS02 MG ? GO:0003735 ... P80339 33916420
    155840 7md7:15 (2.8) BS03 MG ? GO:0003735 ... P80339 33916420
    155841 7md7:15 (2.8) BS04 MG ? GO:0003735 ... P80339 33916420
    155842 7md7:15 (2.8) BS05 ZN ? GO:0003735 ... P80339 33916420
    155843 7md7:16 (2.8) BS02 ZN ? GO:0000049 ... P35871 33916420
    155844 7md7:17 (2.8) BS02 MG ? GO:0003735 ... P80340 33916420
    155845 7md7:17 (2.8) BS03 MG ? GO:0003735 ... P80340 33916420
    155846 7md7:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 33916420
    155847 7md7:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 33916420
    155848 7md7:1D (2.8) BS02 MG ? GO:0002181 ... P60405 33916420
    155849 7md7:1D (2.8) BS03 MG ? GO:0002181 ... P60405 33916420
    155850 7md7:1D (2.8) BS04 MG ? GO:0002181 ... P60405 33916420
    155851 7md7:1D (2.8) BS05 MG ? GO:0002181 ... P60405 33916420
    155852 7md7:1D (2.8) BS06 MG ? GO:0002181 ... P60405 33916420
    155853 7md7:1D (2.8) BS07 MG ? GO:0002181 ... P60405 33916420
    155854 7md7:1D (2.8) BS08 MG ? GO:0002181 ... P60405 33916420
    155855 7md7:1D (2.8) BS09 MG ? GO:0002181 ... P60405 33916420
    155856 7md7:1D (2.8) BS10 MG ? GO:0002181 ... P60405 33916420
    155857 7md7:1D (2.8) BS11 MG ? GO:0002181 ... P60405 33916420
    155858 7md7:1D (2.8) BS12 MG ? GO:0002181 ... P60405 33916420
    155859 7md7:1D (2.8) BS13 MG ? GO:0002181 ... P60405 33916420
    155860 7md7:1D (2.8) BS14 MG ? GO:0002181 ... P60405 33916420
    155861 7md7:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 33916420
    155862 7md7:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 33916420
    155863 7md7:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 33916420
    155864 7md7:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 33916420
    155865 7md7:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 33916420
    155866 7md7:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 33916420
    155867 7md7:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 33916420
    155868 7md7:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 33916420
    155869 7md7:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 33916420
    155870 7md7:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 33916420
    155871 7md7:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 33916420
    155872 7md7:1F (2.8) BS11 MG ? GO:0003735 ... Q5SHN9 33916420
    155873 7md7:1F (2.8) BS12 MG ? GO:0003735 ... Q5SHN9 33916420
    155874 7md7:1G (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 33916420
    155875 7md7:1N (2.8) BS02 MG ? GO:0003729 ... P60488 33916420
    155876 7md7:1N (2.8) BS03 MG ? GO:0003729 ... P60488 33916420
    155877 7md7:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 33916420
    155878 7md7:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 33916420
    155879 7md7:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 33916420
    155880 7md7:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 33916420
    155881 7md7:1Q (2.8) BS03 MG ? GO:0000049 ... P60489 33916420
    155882 7md7:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 33916420
    155883 7md7:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 33916420
    155884 7md7:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 33916420
    155885 7md7:1R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 33916420
    155886 7md7:1R (2.8) BS05 MG ? GO:0003735 ... Q9Z9H5 33916420
    155887 7md7:1U (2.8) BS02 MG ? GO:0000027 ... P60491 33916420
    155888 7md7:1U (2.8) BS03 MG ? GO:0000027 ... P60491 33916420
    155889 7md7:1U (2.8) BS04 MG ? GO:0000027 ... P60491 33916420
    155890 7md7:1U (2.8) BS05 MG ? GO:0000027 ... P60491 33916420
    155891 7md7:1U (2.8) BS06 MG ? GO:0000027 ... P60491 33916420
    155892 7md7:1U (2.8) BS07 MG ? GO:0000027 ... P60491 33916420
    155893 7md7:1V (2.8) BS02 MG ? GO:0003723 ... P60492 33916420
    155894 7md7:1V (2.8) BS03 MG ? GO:0003723 ... P60492 33916420
    155895 7md7:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 33916420
    155896 7md7:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 33916420
    155897 7md7:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 33916420
    155898 7md7:1k (2.8) BS02 MG ? GO:0003735 ... P80376 33916420
    155899 7md7:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 33916420
    155900 7md7:1m (2.8) BS03 MG ? GO:0000049 ... P80377 33916420
    155901 7md7:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 33916420
    155902 7md7:1t (2.8) BS02 MG ? GO:0003723 ... P80380 33916420
    155903 7md7:1y (2.8) BS02 MG ? GO:0005515 ... P0AD49 33916420
    155904 7md7:1y (2.8) BS03 MG ? GO:0005515 ... P0AD49 33916420
    155905 7md7:20 (2.8) BS03 MG ? GO:0003735 ... P60493 33916420
    155906 7md7:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 33916420
    155907 7md7:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 33916420
    155908 7md7:25 (2.8) BS02 MG ? GO:0003735 ... P80339 33916420
    155909 7md7:25 (2.8) BS03 ZN ? GO:0003735 ... P80339 33916420
    155910 7md7:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 33916420
    155911 7md7:27 (2.8) BS02 MG ? GO:0003735 ... P80340 33916420
    155912 7md7:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 33916420
    155913 7md7:2D (2.8) BS02 MG ? GO:0002181 ... P60405 33916420
    155914 7md7:2D (2.8) BS03 MG ? GO:0002181 ... P60405 33916420
    155915 7md7:2D (2.8) BS04 MG ? GO:0002181 ... P60405 33916420
    155916 7md7:2D (2.8) BS05 MG ? GO:0002181 ... P60405 33916420
    155917 7md7:2D (2.8) BS06 MG ? GO:0002181 ... P60405 33916420
    155918 7md7:2D (2.8) BS07 MG ? GO:0002181 ... P60405 33916420
    155919 7md7:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 33916420
    155920 7md7:2E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 33916420
    155921 7md7:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 33916420
    155922 7md7:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 33916420
    155923 7md7:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 33916420
    155924 7md7:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 33916420
    155925 7md7:2I (2.8) BS02 MG ? GO:0003735 ... Q5SLQ1 33916420
    155926 7md7:2Q (2.8) BS03 MG ? GO:0000049 ... P60489 33916420
    155927 7md7:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 33916420
    155928 7md7:2R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 33916420
    155929 7md7:2V (2.8) BS02 MG ? GO:0003723 ... P60492 33916420
    155930 7md7:2V (2.8) BS03 MG ? GO:0003723 ... P60492 33916420
    155931 7md7:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 33916420
    155932 7md7:2W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 33916420
    155933 7md7:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 33916420
    155934 7md7:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 33916420
    155935 7md7:2j (2.8) BS02 MG ? GO:0000049 ... Q5SHN7 33916420
    155936 7md7:2k (2.8) BS02 MG ? GO:0003735 ... P80376 33916420
    155937 7md7:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 33916420
    155938 7md7:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 33916420
    155939 7md7:2t (2.8) BS02 MG ? GO:0003723 ... P80380 33916420
    155940 7mdh:A (2.4) BS01 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155941 7mdh:A (2.4) BS02 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155942 7mdh:A (2.4) BS03 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155943 7mdh:A (2.4) BS04 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155944 7mdh:B (2.4) BS01 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155945 7mdh:B (2.4) BS02 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155946 7mdh:C (2.4) BS01 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155947 7mdh:C (2.4) BS02 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155948 7mdh:C (2.4) BS03 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155949 7mdh:D (2.4) BS01 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155950 7mdh:D (2.4) BS02 ZN 1.1.1.82 GO:0003824 ... P17606 10194350
    155951 7mdy:C (3.5) BS03 MG 7.6.2.- GO:0005524 ... P75957 N/A
    155952 7mdy:D (3.5) BS02 MG 7.6.2.- GO:0005524 ... P75957 N/A
    155953 7mdz:aa (3.2) BS02 ZN ? GO:0003729 ... G1TFE8 34403584
    155954 7mdz:dd (3.2) BS02 ZN ? GO:0003735 ... G1U7M4 34403584
    155955 7mdz:ff (3.2) BS02 ZN ? GO:0003723 ... G1SK22 34403584
    155956 7mdz:g (3.2) BS02 MG ? GO:0003735 ... G1TXG5 34403584
    155957 7mdz:j (3.2) BS03 ZN ? GO:0003723 ... U3KPD5 34403584
    155958 7mdz:m (3.2) BS02 ZN N/A GO:0003735 ... N/A 34403584
    155959 7mdz:o (3.2) BS02 ZN ? GO:0003735 ... G1T040 34403584
    155960 7mdz:p (3.2) BS03 ZN ? GO:0003735 ... G1SY53 34403584
    155961 7me1:A (2.05) BS01 FE ? GO:0007155 ... Q56952 34473105
    155962 7me1:A (2.05) BS02 ZN ? GO:0007155 ... Q56952 34473105
    155963 7me1:B (2.05) BS01 FE ? GO:0007155 ... Q56952 34473105
    155964 7me1:B (2.05) BS02 ZN ? GO:0007155 ... Q56952 34473105
    155965 7me2:A (1.85) BS01 FE ? GO:0007155 ... Q56952 N/A
    155966 7me2:A (1.85) BS02 ZN ? GO:0007155 ... Q56952 N/A
    155967 7me2:A (1.85) BS03 MN ? GO:0007155 ... Q56952 N/A
    155968 7me2:B (1.85) BS01 FE ? GO:0007155 ... Q56952 N/A
    155969 7me2:B (1.85) BS02 ZN ? GO:0007155 ... Q56952 N/A
    155970 7me2:B (1.85) BS03 MN ? GO:0007155 ... Q56952 N/A
    155971 7me3:A (2.25) BS01 FE ? GO:0007155 ... Q56952 N/A
    155972 7me3:A (2.25) BS02 MN ? GO:0007155 ... Q56952 N/A
    155973 7me3:A (2.25) BS03 ZN ? GO:0007155 ... Q56952 N/A
    155974 7me3:B (2.25) BS01 FE ? GO:0007155 ... Q56952 N/A
    155975 7me3:B (2.25) BS02 MN ? GO:0007155 ... Q56952 N/A
    155976 7me3:B (2.25) BS03 ZN ? GO:0007155 ... Q56952 N/A
    155977 7mei:A (3.54) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35051353
    155978 7mei:A (3.54) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 35051353
    155979 7mei:A (3.54) BS06 MG 2.7.7.6 GO:0000428 ... P04050 35051353
    155980 7mei:A (3.54) BS07 MG 2.7.7.6 GO:0000428 ... P04050 35051353
    155981 7mei:B (3.54) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 35051353
    155982 7mei:C (3.54) BS01 ZN ? GO:0000428 ... P16370 35051353
    155983 7mei:I (3.54) BS01 ZN ? GO:0000428 ... P27999 35051353
    155984 7mei:I (3.54) BS02 ZN ? GO:0000428 ... P27999 35051353
    155985 7mei:J (3.54) BS01 ZN ? GO:0000428 ... P22139 35051353
    155986 7mei:L (3.54) BS01 ZN ? GO:0000428 ... P40422 35051353
    155987 7mei:a (3.54) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35051353
    155988 7mei:a (3.54) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 35051353
    155989 7mei:a (3.54) BS06 MG 2.7.7.6 GO:0000428 ... P04050 35051353
    155990 7mei:a (3.54) BS07 MG 2.7.7.6 GO:0000428 ... P04050 35051353
    155991 7mei:b (3.54) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 35051353
    155992 7mei:c (3.54) BS01 ZN ? GO:0000428 ... P16370 35051353
    155993 7mei:i (3.54) BS01 ZN ? GO:0000428 ... P27999 35051353
    155994 7mei:i (3.54) BS02 ZN ? GO:0000428 ... P27999 35051353
    155995 7mei:j (3.54) BS01 ZN ? GO:0000428 ... P22139 35051353
    155996 7mek:A (2.11) BS01 CU ? N/A P94431 34400169
    155997 7mek:B (2.11) BS01 CU ? N/A P94431 34400169
    155998 7mev:A (1.6) BS01 MG 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 N/A
    155999 7mex:A (3.35) BS02 ZN 2.3.2.27 GO:0000151 ... P19812 34789879
    156000 7mex:A (3.35) BS03 ZN 2.3.2.27 GO:0000151 ... P19812 34789879

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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