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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    155601 7m4m:B (2.39) BS02 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 34998453
    155602 7m4m:B (2.39) BS03 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 34998453
    155603 7m4m:B (2.39) BS04 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 34998453
    155604 7m4m:B (2.39) BS05 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 34998453
    155605 7m4n:A (2.52) BS01 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155606 7m4n:A (2.52) BS02 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155607 7m4n:A (2.52) BS03 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155608 7m4n:B (2.52) BS01 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155609 7m4n:B (2.52) BS02 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155610 7m4n:B (2.52) BS03 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155611 7m4o:A (2.21) BS01 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155612 7m4o:A (2.21) BS02 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155613 7m4o:A (2.21) BS03 ZN 2.3.2.27 N/A Q9NWF9 34998453
    155614 7m4v:3 (2.54) BS02 ZN ? GO:0003735 ... B7IA18 34044590
    155615 7m4v:K (2.54) BS02 MG ? GO:0003735 ... B7IA20 34044590
    155616 7m4w:3 (2.55) BS02 ZN N/A GO:0003735 ... N/A 34044590
    155617 7m4w:K (2.55) BS02 MG ? GO:0003735 ... B7IA20 34044590
    155618 7m4x:3 (2.66) BS02 ZN N/A GO:0003735 ... N/A 34044590
    155619 7m4x:K (2.66) BS02 MG ? GO:0003735 ... B7IA20 34044590
    155620 7m4y:3 (2.5) BS02 ZN N/A GO:0003735 ... N/A 34044590
    155621 7m4y:K (2.5) BS02 MG ? GO:0003735 ... B7IA20 34044590
    155622 7m4z:3 (2.92) BS02 ZN N/A GO:0003735 ... N/A 34044590
    155623 7m4z:K (2.92) BS02 MG ? GO:0003735 ... B7IA20 34044590
    155624 7m50:B (2.31) BS01 MG ? GO:0005198 ... P17574 34866603
    155625 7m50:H (2.31) BS03 MG ? GO:0005198 ... P17574 34866603
    155626 7m50:JJ (2.31) BS01 MG ? GO:0005198 ... P17574 34866603
    155627 7m54:B (3.8) BS01 MG ? GO:0005198 ... P17574 34866603
    155628 7m54:F (3.8) BS01 MG ? GO:0005198 ... P17574 34866603
    155629 7m54:G (3.8) BS01 CA ? GO:0005198 ... P17574 34866603
    155630 7m54:H (3.8) BS01 CA ? GO:0005198 ... P17574 34866603
    155631 7m54:H (3.8) BS02 MG ? GO:0005198 ... P17574 34866603
    155632 7m54:HH (3.8) BS01 CA ? GO:0005198 ... P17574 34866603
    155633 7m54:II (3.8) BS01 MG ? GO:0005198 ... P17574 34866603
    155634 7m54:JJ (3.8) BS01 CA ? GO:0005198 ... P17574 34866603
    155635 7m54:JJ (3.8) BS02 MG ? GO:0005198 ... P17574 34866603
    155636 7m54:K (3.8) BS01 CA ? GO:0005198 ... P17574 34866603
    155637 7m54:O (3.8) BS01 CA ? GO:0005198 ... P17574 34866603
    155638 7m54:O (3.8) BS02 MG ? GO:0005198 ... P17574 34866603
    155639 7m56:A (1.957) BS05 ZN 1.14.13.39 GO:0004517 ... P29474 N/A
    155640 7m56:B (1.957) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 N/A
    155641 7m5c:A (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155642 7m5c:C (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155643 7m5c:E (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155644 7m5c:G (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155645 7m5c:I (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155646 7m5c:M (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155647 7m5c:O (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155648 7m5c:Q (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155649 7m5c:S (3.06) BS02 CU ? GO:0042981 ... Q16611 35017502
    155650 7m5d:a (2.8) BS03 ZN ? GO:0002181 ... P0A7M9 N/A
    155651 7m5o:A (3.54) BS02 ZN N/A N/A N/A 34381246
    155652 7m5v:A (2.9) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    155653 7m5x:A (2.7) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    155654 7m5y:A (3.0) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    155655 7m66:A (2.25) BS01 CA 2.3.1.9 GO:0004420 ... A0A4U3MLJ4 37012403
    155656 7m66:A (2.25) BS02 CA 2.3.1.9 GO:0004420 ... A0A4U3MLJ4 37012403
    155657 7m66:B (2.25) BS01 CA 2.3.1.9 GO:0004420 ... A0A4U3MLJ4 37012403
    155658 7m66:C (2.25) BS01 CA 2.3.1.9 GO:0004420 ... A0A4U3MLJ4 37012403
    155659 7m66:C (2.25) BS02 CA 2.3.1.9 GO:0004420 ... A0A4U3MLJ4 37012403
    155660 7m66:D (2.25) BS01 CA 2.3.1.9 GO:0004420 ... A0A4U3MLJ4 37012403
    155661 7m6a:A (3.36) BS02 CA ? GO:0003151 ... P11716 34469755
    155662 7m6a:A (3.36) BS03 ZN ? GO:0003151 ... P11716 34469755
    155663 7m6a:B (3.36) BS02 CA ? GO:0003151 ... P11716 34469755
    155664 7m6a:B (3.36) BS03 ZN ? GO:0003151 ... P11716 34469755
    155665 7m6a:G (3.36) BS02 CA ? GO:0003151 ... P11716 34469755
    155666 7m6a:G (3.36) BS03 ZN ? GO:0003151 ... P11716 34469755
    155667 7m6a:I (3.36) BS02 CA ? GO:0003151 ... P11716 34469755
    155668 7m6a:I (3.36) BS03 ZN ? GO:0003151 ... P11716 34469755
    155669 7m6l:A (3.98) BS02 CA ? GO:0003151 ... P11716 34469755
    155670 7m6l:A (3.98) BS03 ZN ? GO:0003151 ... P11716 34469755
    155671 7m6l:B (3.98) BS02 CA ? GO:0003151 ... P11716 34469755
    155672 7m6l:B (3.98) BS03 ZN ? GO:0003151 ... P11716 34469755
    155673 7m6l:G (3.98) BS02 CA ? GO:0003151 ... P11716 34469755
    155674 7m6l:G (3.98) BS03 ZN ? GO:0003151 ... P11716 34469755
    155675 7m6l:I (3.98) BS02 CA ? GO:0003151 ... P11716 34469755
    155676 7m6l:I (3.98) BS03 ZN ? GO:0003151 ... P11716 34469755
    155677 7m6u:A (2.59) BS01 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155678 7m6u:A (2.59) BS02 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155679 7m6u:B (2.59) BS01 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155680 7m6u:B (2.59) BS02 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155681 7m6u:C (2.59) BS01 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155682 7m6u:C (2.59) BS02 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155683 7m6u:D (2.59) BS01 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155684 7m6u:D (2.59) BS02 ZN 3.4.17.11 GO:0016787 ... P06621 35377786
    155685 7m75:B (2.75) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 34750381
    155686 7m75:L (2.75) BS05 CA ? GO:0009522 ... Q8DGB4 34750381
    155687 7m76:B (3.0) BS10 CA 1.97.1.12 GO:0000287 ... P0A407 34750381
    155688 7m76:L (3.0) BS05 CA ? GO:0009522 ... Q8DGB4 34750381
    155689 7m78:B (3.0) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 34750381
    155690 7m78:L (3.0) BS05 CA ? GO:0009522 ... Q8DGB4 34750381
    155691 7m7a:A (3.2) BS02 MG 3.1.3.64 N/A Q5ZRA8 33927055
    155692 7m7a:B (3.2) BS02 MG 3.1.3.64 N/A Q5ZRA8 33927055
    155693 7m7a:C (3.2) BS02 MG 3.1.3.64 N/A Q5ZRA8 33927055
    155694 7m7a:D (3.2) BS02 MG 3.1.3.64 N/A Q5ZRA8 33927055
    155695 7m7l:A (1.58) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155696 7m7l:A (1.58) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155697 7m7m:A (1.46) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155698 7m7m:A (1.46) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155699 7m7n:A (1.31) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155700 7m7n:A (1.31) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155701 7m7o:A (1.8) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155702 7m7o:A (1.8) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155703 7m7p:A (1.8) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155704 7m7p:A (1.8) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155705 7m7q:A (2.27) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155706 7m7q:A (2.27) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155707 7m7r:A (1.81) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155708 7m7r:A (1.81) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155709 7m7s:A (1.85) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155710 7m7t:A (1.46) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155711 7m7u:A (1.94) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155712 7m7u:A (1.94) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155713 7m7u:A (1.94) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155714 7m7y:A (1.8) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155715 7m7z:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155716 7m7z:A (1.82) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155717 7m7z:A (1.82) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155718 7m80:A (1.98) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155719 7m80:A (1.98) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155720 7m80:A (1.98) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155721 7m81:A (2.05) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155722 7m81:A (2.05) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155723 7m81:A (2.05) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155724 7m82:A (2.07) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155725 7m82:A (2.07) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155726 7m82:A (2.07) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155727 7m83:A (1.55) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155728 7m84:A (1.47) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155729 7m84:A (1.47) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155730 7m84:A (1.47) BS06 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155731 7m85:A (1.75) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155732 7m85:A (1.75) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155733 7m85:A (1.75) BS06 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155734 7m86:A (1.55) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155735 7m86:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155736 7m86:A (1.55) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155737 7m87:A (1.85) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155738 7m87:A (1.85) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155739 7m87:A (1.85) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155740 7m88:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155741 7m88:A (1.66) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155742 7m88:A (1.66) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155743 7m89:A (1.83) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155744 7m8a:A (1.91) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155745 7m8a:A (1.91) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155746 7m8a:A (1.91) BS06 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155747 7m8b:A (1.85) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155748 7m8b:A (1.85) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155749 7m8b:A (1.85) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155750 7m8c:A (1.85) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155751 7m8c:A (1.85) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155752 7m8c:A (1.85) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155753 7m8d:A (1.92) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155754 7m8d:A (1.92) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    155755 7m8e:D (3.4) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 34428297
    155756 7m8e:D (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 34428297
    155757 7m8e:D (3.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 34428297
    155758 7m8q:A (2.08) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155759 7m8q:A (2.08) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155760 7m8q:E (2.08) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155761 7m8q:E (2.08) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155762 7m8r:A (2.22) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155763 7m8r:A (2.22) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155764 7m8r:E (2.22) BS01 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155765 7m8r:E (2.22) BS02 FE 1.14.13.25 GO:0004497 ... P27353 34100595
    155766 7mbh:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P09104 36893255
    155767 7mbh:B (2.1) BS02 MG 4.2.1.11 GO:0000015 ... P09104 36893255
    155768 7mbl:A (2.7) BS01 CO ? GO:0003677 ... P35747 37325156
    155769 7mbl:A (2.7) BS02 CO ? GO:0003677 ... P35747 37325156
    155770 7mbq:A (2.3) BS01 CA ? GO:0005216 ... S5UH55 34168372
    155771 7mbq:A (2.3) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155772 7mbq:B (2.3) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155773 7mbq:B (2.3) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155774 7mbq:C (2.3) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155775 7mbq:C (2.3) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155776 7mbq:D (2.3) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155777 7mbq:D (2.3) BS04 CA ? GO:0005216 ... S5UH55 34168372
    155778 7mbs:A (-1.00) BS01 CA ? GO:0005216 ... S5UH55 34168372
    155779 7mbs:A (-1.00) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155780 7mbs:B (-1.00) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155781 7mbs:B (-1.00) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155782 7mbs:C (-1.00) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155783 7mbs:C (-1.00) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155784 7mbs:D (-1.00) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155785 7mbs:D (-1.00) BS04 CA ? GO:0005216 ... S5UH55 34168372
    155786 7mbu:A (-1.00) BS01 CA ? GO:0005216 ... S5UH55 34168372
    155787 7mbu:B (-1.00) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155788 7mbu:C (-1.00) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155789 7mbu:D (-1.00) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155790 7mbv:A (2.8) BS01 CA ? GO:0005216 ... S5UH55 34168372
    155791 7mbv:A (2.8) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155792 7mbv:B (2.8) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155793 7mbv:B (2.8) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155794 7mbv:C (2.8) BS02 CA ? GO:0005216 ... S5UH55 34168372
    155795 7mbv:C (2.8) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155796 7mbv:D (2.8) BS03 CA ? GO:0005216 ... S5UH55 34168372
    155797 7mbv:D (2.8) BS04 CA ? GO:0005216 ... S5UH55 34168372
    155798 7mbw:A (3.2) BS02 MG ? GO:0003677 ... P05846 35173349
    155799 7mc1:A (-1.00) BS01 ZN ? N/A Q13105 34963061
    155800 7mc3:A (-1.00) BS01 ZN ? N/A Q13105 34963061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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