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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15201 1tn3:A (2.0) BS01 CA ? N/A P05452 9757090
    15202 1tn3:A (2.0) BS02 CA ? N/A P05452 9757090
    15203 1tn4:A (1.95) BS01 CA ? GO:0005509 ... P02586 9438870
    15204 1tn4:A (1.95) BS02 CA ? GO:0005509 ... P02586 9438870
    15205 1tn4:A (1.95) BS03 CA ? GO:0005509 ... P02586 9438870
    15206 1tn4:A (1.95) BS04 CA ? GO:0005509 ... P02586 9438870
    15207 1tn4:A (1.95) BS05 CA ? GO:0005509 ... P02586 9438870
    15208 1tn6:B (1.8) BS05 ZN 2.5.1.58 GO:0003824 ... P49356 15451670
    15209 1tn7:B (2.3) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 15451670
    15210 1tn8:B (2.25) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 15451670
    15211 1tnb:B (2.85) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15212 1tnb:D (2.85) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15213 1tnb:F (2.85) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15214 1tnb:H (2.85) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15215 1tnb:J (2.85) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15216 1tnb:L (2.85) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15217 1tnd:A (2.2) BS01 MG ? GO:0000035 ... P04695 8259210
    15218 1tnd:B (2.2) BS01 MG ? GO:0000035 ... P04695 8259210
    15219 1tnd:C (2.2) BS01 MG ? GO:0000035 ... P04695 8259210
    15220 1tng:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    15221 1tnh:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    15222 1tni:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    15223 1tnj:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    15224 1tnk:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    15225 1tnl:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    15226 1tno:B (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15227 1tno:D (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15228 1tno:F (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15229 1tno:H (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15230 1tno:J (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15231 1tno:L (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15232 1tnq:A (-1.00) BS01 CA ? GO:0005509 ... P02588 7552750
    15233 1tnq:A (-1.00) BS02 CA ? GO:0005509 ... P02588 7552750
    15234 1tnu:B (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15235 1tnu:D (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15236 1tnu:F (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15237 1tnu:H (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15238 1tnu:J (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15239 1tnu:L (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15240 1tny:B (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15241 1tny:D (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15242 1tny:F (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15243 1tny:H (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15244 1tny:J (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15245 1tny:L (2.7) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15246 1tnz:B (2.9) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15247 1tnz:D (2.9) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15248 1tnz:F (2.9) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15249 1tnz:H (2.9) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15250 1tnz:J (2.9) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15251 1tnz:L (2.9) BS02 ZN 2.5.1.59 GO:0003824 ... P53610 15451670
    15252 1to1:E (1.68) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    15253 1to2:E (1.3) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    15254 1to4:A (1.55) BS01 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15255 1to4:A (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15256 1to4:B (1.55) BS01 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15257 1to4:B (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15258 1to4:C (1.55) BS01 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15259 1to4:C (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15260 1to4:D (1.55) BS01 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15261 1to4:D (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15262 1to5:A (2.2) BS01 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15263 1to5:A (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15264 1to5:B (2.2) BS01 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15265 1to5:B (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15266 1to5:C (2.2) BS01 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15267 1to5:C (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15268 1to5:D (2.2) BS01 ZN 1.15.1.1 GO:0004784 ... Q01137 15333927
    15269 1to5:D (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    15270 1toa:A (1.8) BS01 ZN ? GO:0007155 ... P96116 10404217
    15271 1toa:B (1.8) BS01 ZN ? GO:0007155 ... P96116 10404217
    15272 1toh:A (2.3) BS01 FE 1.14.16.2 GO:0004497 ... P04177 9228951
    15273 1ton:A (1.8) BS01 ZN 3.4.21.35 GO:0003073 ... P00759 2821276
    15274 1top:A (1.78) BS01 CA ? GO:0003009 ... P02588 15299475
    15275 1top:A (1.78) BS02 CA ? GO:0003009 ... P02588 15299475
    15276 1tot:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... P45481 15476823
    15277 1tot:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... P45481 15476823
    15278 1tpa:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    15279 1tpo:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    15280 1tpp:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    15281 1tps:A (1.9) BS02 CA 3.4.21.4 GO:0004175 ... P00760 9383379
    15282 1tq6:A (2.7) BS01 MG 3.6.5.- GO:0003924 ... Q9QZ85 15350217
    15283 1tq7:B (2.4) BS02 ZN 3.4.21.5 GO:0004252 ... P00734 15252033
    15284 1tqs:A (1.3) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    15285 1tqt:A (1.9) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    15286 1tqu:A (2.03) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    15287 1tqv:A (2.03) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    15288 1tqw:A (1.2) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    15289 1tqx:A (2.0) BS02 ZN 5.1.3.1 GO:0004750 ... Q8I5L3 16304640
    15290 1tqx:B (2.0) BS02 ZN 5.1.3.1 GO:0004750 ... Q8I5L3 16304640
    15291 1tqy:A (2.0) BS01 MG 2.3.1.- GO:0004315 ... Q02059 15286722
    15292 1tqy:C (2.0) BS01 MG 2.3.1.- GO:0004315 ... Q02059 15286722
    15293 1tqy:E (2.0) BS01 MG 2.3.1.- GO:0004315 ... Q02059 15286722
    15294 1tqy:G (2.0) BS01 MG 2.3.1.- GO:0004315 ... Q02059 15286722
    15295 1tr5:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 15276844
    15296 1trk:A (2.0) BS01 CA 2.2.1.1 GO:0003824 ... P23254 8176731
    15297 1trk:B (2.0) BS02 CA 2.2.1.1 GO:0003824 ... P23254 8176731
    15298 1trm:A (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 3112942
    15299 1trm:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 3112942
    15300 1tsr:A (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    15301 1tsr:B (2.2) BS03 ZN ? GO:0000976 ... P04637 8023157
    15302 1tsr:C (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    15303 1tt2:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 15276844
    15304 1tt4:A (2.801) BS01 MG 6.3.2.2 GO:0003824 ... Q8ZR41 N/A
    15305 1tt4:B (2.801) BS01 MG 6.3.2.2 GO:0003824 ... Q8ZR41 N/A
    15306 1tt5:B (2.6) BS02 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 15361859
    15307 1tt5:D (2.6) BS02 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 15361859
    15308 1tth:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    15309 1tth:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    15310 1ttm:A (1.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15453828
    15311 1ttt:A (2.7) BS04 MG ? GO:0003746 ... Q01698 7491491
    15312 1ttt:B (2.7) BS04 MG ? GO:0003746 ... Q01698 7491491
    15313 1ttt:C (2.7) BS04 MG ? GO:0003746 ... Q01698 7491491
    15314 1ttx:A (-1.00) BS01 CA ? GO:0005509 ... P0CE72 15610002
    15315 1ttx:A (-1.00) BS02 CA ? GO:0005509 ... P0CE72 15610002
    15316 1tu0:B (2.55) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    15317 1tu0:D (2.55) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    15318 1tu2:A (-1.00) BS01 CU ? GO:0005507 ... P46444 15705583
    15319 1tu3:A (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    15320 1tu3:B (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    15321 1tu3:C (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    15322 1tu3:D (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    15323 1tu3:E (2.31) BS01 MG 3.6.5.2 GO:0003924 ... P20339 15378032
    15324 1tu4:B (2.2) BS01 CO 3.6.5.2 GO:0003924 ... P20339 15378032
    15325 1tu4:D (2.2) BS01 CO 3.6.5.2 GO:0003924 ... P20339 15378032
    15326 1tu5:A (2.37) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 15701511
    15327 1tu5:A (2.37) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    15328 1tu5:A (2.37) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    15329 1tu5:B (2.37) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 15701511
    15330 1tu5:B (2.37) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    15331 1tu5:B (2.37) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    15332 1tug:B (2.1) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    15333 1tug:D (2.1) BS01 ZN ? GO:0005515 ... P0A7F3 15288791
    15334 1tui:A (2.7) BS01 MG ? GO:0003746 ... Q01698 8939739
    15335 1tum:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 9063868
    15336 1tup:A (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    15337 1tup:B (2.2) BS03 ZN ? GO:0000976 ... P04637 8023157
    15338 1tup:C (2.2) BS02 ZN ? GO:0000976 ... P04637 8023157
    15339 1tvg:A (1.6) BS01 CA ? GO:0001501 ... Q9Y547 18816799
    15340 1tvy:A (2.3) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    15341 1tvy:B (2.3) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    15342 1tw1:A (2.3) BS02 MG 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    15343 1tw1:B (2.3) BS02 MG 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    15344 1tw5:A (2.3) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    15345 1tw5:B (2.3) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15449940
    15346 1tw6:A (1.713) BS02 ZN 2.3.2.27 N/A Q96CA5 15485396
    15347 1tw6:B (1.713) BS02 ZN 2.3.2.27 N/A Q96CA5 15485396
    15348 1tw8:A (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    15349 1tw8:A (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    15350 1tw8:B (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    15351 1tw8:B (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    15352 1tw8:C (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    15353 1tw8:C (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    15354 1tw8:D (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    15355 1tw8:D (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    15356 1twa:A (3.2) BS01 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15357 1twa:A (3.2) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15358 1twa:A (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15359 1twa:B (3.2) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    15360 1twa:C (3.2) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    15361 1twa:I (3.2) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15362 1twa:I (3.2) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15363 1twa:J (3.2) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    15364 1twa:L (3.2) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    15365 1twc:A (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15366 1twc:A (3.0) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15367 1twc:A (3.0) BS03 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15368 1twc:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    15369 1twc:C (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    15370 1twc:I (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15371 1twc:I (3.0) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15372 1twc:J (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    15373 1twc:L (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    15374 1twf:A (2.3) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15375 1twf:A (2.3) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15376 1twf:A (2.3) BS03 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15377 1twf:B (2.3) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    15378 1twf:C (2.3) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    15379 1twf:I (2.3) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15380 1twf:I (2.3) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15381 1twf:J (2.3) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    15382 1twf:L (2.3) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    15383 1twg:A (3.3) BS01 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15384 1twg:A (3.3) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15385 1twg:A (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15386 1twg:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15387 1twg:B (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    15388 1twg:C (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    15389 1twg:I (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15390 1twg:I (3.3) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15391 1twg:J (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    15392 1twg:L (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    15393 1twh:A (3.4) BS01 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15394 1twh:A (3.4) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    15395 1twh:A (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15396 1twh:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    15397 1twh:B (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    15398 1twh:C (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    15399 1twh:I (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    15400 1twh:I (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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