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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    153201 7jql:1P (3.0) BS04 MG ? GO:0003735 ... Q5SHQ7 32787108
    153202 7jql:1Q (3.0) BS03 MG ? GO:0000049 ... P60489 32787108
    153203 7jql:1Q (3.0) BS04 MG ? GO:0000049 ... P60489 32787108
    153204 7jql:1R (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 32787108
    153205 7jql:1R (3.0) BS03 MG ? GO:0003735 ... Q9Z9H5 32787108
    153206 7jql:1S (3.0) BS03 MG ? GO:0003735 ... Q5SHQ4 32787108
    153207 7jql:1S (3.0) BS04 MG ? GO:0003735 ... Q5SHQ4 32787108
    153208 7jql:1T (3.0) BS03 MG ? GO:0003735 ... P60490 32787108
    153209 7jql:1U (3.0) BS02 MG ? GO:0000027 ... P60491 32787108
    153210 7jql:1U (3.0) BS03 MG ? GO:0000027 ... P60491 32787108
    153211 7jql:1U (3.0) BS04 MG ? GO:0000027 ... P60491 32787108
    153212 7jql:1V (3.0) BS02 MG ? GO:0003723 ... P60492 32787108
    153213 7jql:1V (3.0) BS03 MG ? GO:0003723 ... P60492 32787108
    153214 7jql:1V (3.0) BS04 MG ? GO:0003723 ... P60492 32787108
    153215 7jql:1V (3.0) BS05 MG ? GO:0003723 ... P60492 32787108
    153216 7jql:1W (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 32787108
    153217 7jql:1W (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 32787108
    153218 7jql:1W (3.0) BS04 MG ? GO:0003735 ... Q5SHP3 32787108
    153219 7jql:1X (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 32787108
    153220 7jql:1X (3.0) BS03 MG ? GO:0000027 ... Q5SHP0 32787108
    153221 7jql:1X (3.0) BS04 MG ? GO:0000027 ... Q5SHP0 32787108
    153222 7jql:1Y (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 32787108
    153223 7jql:1b (3.0) BS02 MG ? GO:0003735 ... P80371 32787108
    153224 7jql:1e (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 32787108
    153225 7jql:1f (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 32787108
    153226 7jql:1k (3.0) BS02 MG ? GO:0003735 ... P80376 32787108
    153227 7jql:1m (3.0) BS03 MG ? GO:0000049 ... P80377 32787108
    153228 7jql:1n (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 32787108
    153229 7jql:24 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 32787108
    153230 7jql:25 (3.0) BS02 MG ? GO:0003735 ... P80339 32787108
    153231 7jql:25 (3.0) BS03 ZN ? GO:0003735 ... P80339 32787108
    153232 7jql:26 (3.0) BS02 MG ? GO:0000049 ... P35871 32787108
    153233 7jql:26 (3.0) BS03 ZN ? GO:0000049 ... P35871 32787108
    153234 7jql:29 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 32787108
    153235 7jql:2D (3.0) BS03 MG ? GO:0002181 ... P60405 32787108
    153236 7jql:2E (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 32787108
    153237 7jql:2Q (3.0) BS03 MG ? GO:0000049 ... P60489 32787108
    153238 7jql:2U (3.0) BS02 MG ? GO:0000027 ... P60491 32787108
    153239 7jql:2V (3.0) BS02 MG ? GO:0003723 ... P60492 32787108
    153240 7jql:2Y (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 32787108
    153241 7jql:2k (3.0) BS02 MG ? GO:0003735 ... P80376 32787108
    153242 7jql:2n (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 32787108
    153243 7jql:2t (3.0) BS02 MG ? GO:0003723 ... P80380 32787108
    153244 7jqm:10 (3.05) BS03 MG ? GO:0003735 ... P60493 32787108
    153245 7jqm:10 (3.05) BS04 MG ? GO:0003735 ... P60493 32787108
    153246 7jqm:12 (3.05) BS02 MG ? GO:0003735 ... Q5SHP6 32787108
    153247 7jqm:13 (3.05) BS03 MG ? GO:0003735 ... Q5SHQ6 32787108
    153248 7jqm:14 (3.05) BS02 ZN ? GO:0003735 ... Q5SJE1 32787108
    153249 7jqm:15 (3.05) BS02 MG ? GO:0003735 ... P80339 32787108
    153250 7jqm:15 (3.05) BS03 MG ? GO:0003735 ... P80339 32787108
    153251 7jqm:15 (3.05) BS04 ZN ? GO:0003735 ... P80339 32787108
    153252 7jqm:16 (3.05) BS02 ZN ? GO:0000049 ... P35871 32787108
    153253 7jqm:18 (3.05) BS02 MG ? GO:0003735 ... Q5SKU1 32787108
    153254 7jqm:19 (3.05) BS02 ZN ? GO:0003735 ... Q5SHR2 32787108
    153255 7jqm:1D (3.05) BS03 MG ? GO:0002181 ... P60405 32787108
    153256 7jqm:1D (3.05) BS04 MG ? GO:0002181 ... P60405 32787108
    153257 7jqm:1D (3.05) BS05 MG ? GO:0002181 ... P60405 32787108
    153258 7jqm:1D (3.05) BS06 MG ? GO:0002181 ... P60405 32787108
    153259 7jqm:1D (3.05) BS07 MG ? GO:0002181 ... P60405 32787108
    153260 7jqm:1E (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 32787108
    153261 7jqm:1E (3.05) BS03 MG ? GO:0003735 ... Q5SHN8 32787108
    153262 7jqm:1F (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 32787108
    153263 7jqm:1F (3.05) BS03 MG ? GO:0003735 ... Q5SHN9 32787108
    153264 7jqm:1F (3.05) BS04 MG ? GO:0003735 ... Q5SHN9 32787108
    153265 7jqm:1F (3.05) BS05 MG ? GO:0003735 ... Q5SHN9 32787108
    153266 7jqm:1F (3.05) BS06 MG ? GO:0003735 ... Q5SHN9 32787108
    153267 7jqm:1F (3.05) BS07 MG ? GO:0003735 ... Q5SHN9 32787108
    153268 7jqm:1G (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 32787108
    153269 7jqm:1G (3.05) BS05 MG ? GO:0000049 ... Q5SHQ0 32787108
    153270 7jqm:1N (3.05) BS02 MG ? GO:0003729 ... P60488 32787108
    153271 7jqm:1P (3.05) BS02 MG ? GO:0003735 ... Q5SHQ7 32787108
    153272 7jqm:1P (3.05) BS03 MG ? GO:0003735 ... Q5SHQ7 32787108
    153273 7jqm:1P (3.05) BS04 MG ? GO:0003735 ... Q5SHQ7 32787108
    153274 7jqm:1Q (3.05) BS03 MG ? GO:0000049 ... P60489 32787108
    153275 7jqm:1R (3.05) BS02 MG ? GO:0003735 ... Q9Z9H5 32787108
    153276 7jqm:1R (3.05) BS03 MG ? GO:0003735 ... Q9Z9H5 32787108
    153277 7jqm:1S (3.05) BS03 MG ? GO:0003735 ... Q5SHQ4 32787108
    153278 7jqm:1U (3.05) BS02 MG ? GO:0000027 ... P60491 32787108
    153279 7jqm:1U (3.05) BS03 MG ? GO:0000027 ... P60491 32787108
    153280 7jqm:1V (3.05) BS02 MG ? GO:0003723 ... P60492 32787108
    153281 7jqm:1V (3.05) BS03 MG ? GO:0003723 ... P60492 32787108
    153282 7jqm:1W (3.05) BS02 MG ? GO:0003735 ... Q5SHP3 32787108
    153283 7jqm:1W (3.05) BS03 MG ? GO:0003735 ... Q5SHP3 32787108
    153284 7jqm:1X (3.05) BS02 MG ? GO:0000027 ... Q5SHP0 32787108
    153285 7jqm:1Y (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 32787108
    153286 7jqm:1f (3.05) BS02 MG ? GO:0003735 ... Q5SLP8 32787108
    153287 7jqm:1k (3.05) BS02 MG ? GO:0003735 ... P80376 32787108
    153288 7jqm:1l (3.05) BS02 MG ? GO:0000049 ... Q5SHN3 32787108
    153289 7jqm:1m (3.05) BS03 MG ? GO:0000049 ... P80377 32787108
    153290 7jqm:1n (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 32787108
    153291 7jqm:21 (3.05) BS02 MG ? GO:0003735 ... P60494 32787108
    153292 7jqm:24 (3.05) BS02 ZN ? GO:0003735 ... Q5SJE1 32787108
    153293 7jqm:25 (3.05) BS02 ZN ? GO:0003735 ... P80339 32787108
    153294 7jqm:26 (3.05) BS02 MG ? GO:0000049 ... P35871 32787108
    153295 7jqm:26 (3.05) BS03 ZN ? GO:0000049 ... P35871 32787108
    153296 7jqm:29 (3.05) BS02 ZN ? GO:0003735 ... Q5SHR2 32787108
    153297 7jqm:2E (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 32787108
    153298 7jqm:2F (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 32787108
    153299 7jqm:2V (3.05) BS02 MG ? GO:0003723 ... P60492 32787108
    153300 7jqm:2Y (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 32787108
    153301 7jqm:2Z (3.05) BS03 MG ? GO:0003723 ... Q5SHZ1 32787108
    153302 7jqm:2f (3.05) BS02 MG ? GO:0003735 ... Q5SLP8 32787108
    153303 7jqm:2j (3.05) BS02 MG ? GO:0000049 ... Q5SHN7 32787108
    153304 7jqm:2k (3.05) BS02 MG ? GO:0003735 ... P80376 32787108
    153305 7jqm:2n (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 32787108
    153306 7jqm:2q (3.05) BS02 MG ? GO:0003735 ... P0DOY7 32787108
    153307 7jqq:A (4.1) BS04 MG 3.6.4.- GO:0003677 ... P11014 33962953
    153308 7jqq:B (4.1) BS05 MG 3.6.4.- GO:0003677 ... P11014 33962953
    153309 7jqq:C (4.1) BS04 MG 3.6.4.- GO:0003677 ... P11014 33962953
    153310 7jr8:B (1.13) BS03 MG 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 33991628
    153311 7jrd:B (2.85) BS01 FE 3.4.21.- GO:0001503 ... P02788 34751649
    153312 7jrd:B (2.85) BS02 FE 3.4.21.- GO:0001503 ... P02788 34751649
    153313 7jre:A (2.5) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... Q68T42 N/A
    153314 7jre:B (2.5) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... Q68T42 N/A
    153315 7jre:C (2.5) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... Q68T42 N/A
    153316 7jre:D (2.5) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... Q68T42 N/A
    153317 7jre:E (2.5) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... Q68T42 N/A
    153318 7jre:F (2.5) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... Q68T42 N/A
    153319 7jrf:B (1.33) BS02 CA 1.18.6.1 GO:0005524 ... P07329 33320413
    153320 7jrf:B (1.33) BS03 CA 1.18.6.1 GO:0005524 ... P07329 33320413
    153321 7jrf:D (1.33) BS01 CA 1.18.6.1 GO:0005524 ... P07329 33320413
    153322 7jrf:D (1.33) BS02 CA 1.18.6.1 GO:0005524 ... P07329 33320413
    153323 7jrg:A (3.2) BS01 ZN ? GO:0004222 ... A0A1S3TWG4 33463523
    153324 7jrg:M (3.2) BS01 ZN ? GO:0004222 ... A0A1S3TWG4 33463523
    153325 7jrl:A (1.5) BS01 CA ? N/A A0A0H2YN38 33658366
    153326 7jrm:A (2.0) BS01 CA ? N/A A0A0H2YN38 33658366
    153327 7jrn:A (2.48) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 34341772
    153328 7jrn:J (2.48) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 34341772
    153329 7jro:a (3.8) BS03 CU N/A GO:0004129 ... N/A 33463523
    153330 7jro:a (3.8) BS04 MG N/A GO:0004129 ... N/A 33463523
    153331 7jro:e (3.8) BS01 ZN ? GO:0005740 ... A0A1S3U1E4 33463523
    153332 7jrp:A (3.8) BS01 ZN ? GO:0004222 ... A0A1S3TWG4 33463523
    153333 7jrp:M (3.8) BS01 ZN ? GO:0004222 ... A0A1S3TWG4 33463523
    153334 7jrp:a (3.8) BS03 CU N/A GO:0004129 ... N/A 33463523
    153335 7jrp:a (3.8) BS04 MG N/A GO:0004129 ... N/A 33463523
    153336 7jrp:e (3.8) BS01 ZN ? GO:0005740 ... A0A1S3U1E4 33463523
    153337 7js3:A (2.4) BS01 MG 3.1.3.11 GO:0005829 ... Q5NEJ8 33135671
    153338 7js3:A (2.4) BS02 MG 3.1.3.11 GO:0005829 ... Q5NEJ8 33135671
    153339 7js3:B (2.4) BS01 MG 3.1.3.11 GO:0005829 ... Q5NEJ8 33135671
    153340 7js3:C (2.4) BS01 MG 3.1.3.11 GO:0005829 ... Q5NEJ8 33135671
    153341 7js8:A (1.634) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153342 7js8:A (1.634) BS02 CA 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153343 7js8:A (1.634) BS03 CA 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153344 7js8:B (1.634) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153345 7js8:B (1.634) BS02 CA 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153346 7js8:B (1.634) BS03 CA 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153347 7js8:C (1.634) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153348 7js8:C (1.634) BS02 CA 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153349 7js8:C (1.634) BS03 CA 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 33797924
    153350 7jsd:A (2.5) BS03 FE2 N/A N/A N/A 34937913
    153351 7jsd:B (2.5) BS03 FE2 N/A N/A N/A 34937913
    153352 7jsd:C (2.5) BS03 FE2 N/A N/A N/A 34937913
    153353 7jsd:D (2.5) BS02 FE2 N/A N/A N/A 34937913
    153354 7jsj:A (3.12) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    153355 7jsj:A (3.12) BS03 NA ? GO:0005343 ... Q86YT5 33597751
    153356 7jsj:B (3.12) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    153357 7jsj:B (3.12) BS03 NA ? GO:0005343 ... Q86YT5 33597751
    153358 7jsk:A (3.04) BS01 NA ? GO:0005343 ... Q86YT5 33597751
    153359 7jsk:A (3.04) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    153360 7jsk:B (3.04) BS01 NA ? GO:0005343 ... Q86YT5 33597751
    153361 7jsk:B (3.04) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    153362 7jsn:A (3.2) BS01 ZN 3.1.4.35 GO:0001750 ... P11541 33007200
    153363 7jsn:B (3.2) BS01 ZN 3.1.4.35 GO:0001750 ... P23439 33007200
    153364 7jtv:A (2.45) BS02 ZN 3.4.24.- GO:0005576 ... Q9I5W4 33030205
    153365 7jtv:B (2.45) BS02 ZN 3.4.24.- GO:0005576 ... Q9I5W4 33030205
    153366 7jty:B (2.21) BS01 CA ? GO:0001701 ... O08795 34870992
    153367 7jty:B (2.21) BS02 CA ? GO:0001701 ... O08795 34870992
    153368 7jty:D (2.21) BS01 CA ? GO:0001701 ... O08795 34870992
    153369 7jty:D (2.21) BS02 CA ? GO:0001701 ... O08795 34870992
    153370 7jtz:A (2.07) BS01 ZN ? GO:0005096 ... P38682 33436318
    153371 7jtz:B (2.07) BS01 ZN ? GO:0005096 ... P38682 33436318
    153372 7jtz:C (2.07) BS01 ZN ? GO:0005096 ... P38682 33436318
    153373 7jtz:D (2.07) BS01 ZN ? GO:0005096 ... P38682 33436318
    153374 7ju3:A (2.7) BS03 CA ? GO:0003677 ... P39897 33784401
    153375 7ju3:B (2.7) BS03 CA ? GO:0003677 ... P39897 33784401
    153376 7ju4:7 (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153377 7ju4:9 (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153378 7ju4:H (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153379 7ju4:L (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153380 7ju4:P (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153381 7ju4:R (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153382 7ju4:T (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153383 7ju4:X (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153384 7ju4:Z (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153385 7ju4:t (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 33318703
    153386 7ju8:A (2.0) BS01 ZN 3.4.24.- GO:0004222 ... P45452 N/A
    153387 7ju8:A (2.0) BS02 ZN 3.4.24.- GO:0004222 ... P45452 N/A
    153388 7ju8:A (2.0) BS03 CA 3.4.24.- GO:0004222 ... P45452 N/A
    153389 7ju8:A (2.0) BS04 CA 3.4.24.- GO:0004222 ... P45452 N/A
    153390 7ju8:B (2.0) BS01 ZN 3.4.24.- GO:0004222 ... P45452 N/A
    153391 7ju8:B (2.0) BS02 ZN 3.4.24.- GO:0004222 ... P45452 N/A
    153392 7ju8:B (2.0) BS03 CA 3.4.24.- GO:0004222 ... P45452 N/A
    153393 7ju8:B (2.0) BS04 CA 3.4.24.- GO:0004222 ... P45452 N/A
    153394 7jub:A (1.2) BS01 CA ? N/A P22897 33545173
    153395 7juc:A (1.4) BS01 CA ? N/A P22897 33545173
    153396 7jud:A (1.4) BS01 CA ? N/A P22897 33545173
    153397 7jud:A (1.4) BS02 CA ? N/A P22897 33545173
    153398 7jud:B (1.4) BS01 CA ? N/A P22897 33545173
    153399 7jue:A (1.4) BS02 CA ? N/A P22897 33545173
    153400 7juf:A (1.4) BS02 CA ? N/A P22897 33545173

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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