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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    151001 7dz2:D (1.55) BS01 MG N/A N/A N/A N/A
    151002 7dz3:A (1.88) BS01 MG N/A N/A N/A N/A
    151003 7dz3:B (1.88) BS01 MG N/A N/A N/A N/A
    151004 7dz3:C (1.88) BS02 MG N/A N/A N/A N/A
    151005 7dz3:D (1.88) BS02 MG N/A N/A N/A N/A
    151006 7dz4:A (1.84) BS01 MG N/A N/A N/A N/A
    151007 7dz4:B (1.84) BS01 MG N/A N/A N/A N/A
    151008 7dz4:C (1.84) BS02 MG N/A N/A N/A N/A
    151009 7dz4:D (1.84) BS02 MG N/A N/A N/A N/A
    151010 7dz5:A (1.7) BS03 MG N/A N/A N/A N/A
    151011 7dz5:B (1.7) BS02 MG N/A N/A N/A N/A
    151012 7dz5:C (1.7) BS03 MG N/A N/A N/A N/A
    151013 7dz5:D (1.7) BS03 MG N/A N/A N/A N/A
    151014 7dz6:A (2.1) BS01 MG N/A N/A N/A N/A
    151015 7dz6:B (2.1) BS01 MG N/A N/A N/A N/A
    151016 7dz6:C (2.1) BS02 MG N/A N/A N/A N/A
    151017 7dz6:D (2.1) BS02 MG N/A N/A N/A N/A
    151018 7dz9:A (2.2) BS02 FE ? GO:0046872 ... E3BK14 35110668
    151019 7dz9:A (2.2) BS03 FE ? GO:0046872 ... E3BK14 35110668
    151020 7dz9:A (2.2) BS04 FE ? GO:0046872 ... E3BK14 35110668
    151021 7dz9:B (2.2) BS02 FE ? GO:0046872 ... E3BK14 35110668
    151022 7dz9:B (2.2) BS03 FE ? GO:0046872 ... E3BK14 35110668
    151023 7dz9:B (2.2) BS04 FE ? GO:0046872 ... E3BK14 35110668
    151024 7e03:A (1.6) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    151025 7e03:A (1.6) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    151026 7e06:A (1.97) BS02 FE ? GO:0046872 ... S5TUM1 N/A
    151027 7e06:B (1.97) BS02 FE ? GO:0046872 ... S5TUM1 N/A
    151028 7e07:A (2.14) BS03 FE ? GO:0046872 ... S5TUM1 N/A
    151029 7e07:B (2.14) BS01 FE ? GO:0046872 ... S5TUM1 N/A
    151030 7e0l:A (2.82) BS03 FE 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    151031 7e0l:B (2.82) BS03 FE 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    151032 7e0l:K (2.82) BS03 FE 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    151033 7e0l:M (2.82) BS03 FE 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    151034 7e0x:A (1.887) BS01 CO 1.13.11.27 GO:0003868 ... P93836 34542283
    151035 7e0z:A (2.162) BS03 MG 2.7.11.11 GO:0000122 ... P05132 35297759
    151036 7e12:A (2.796) BS03 MG 2.7.11.11 GO:0000122 ... P05132 35297759
    151037 7e1c:A (1.9) BS01 CA ? GO:0000902 ... A0A0H3XJK5 36285441
    151038 7e1e:A (3.34) BS01 CA ? N/A Q98TC9 N/A
    151039 7e1e:A (3.34) BS02 CA ? N/A Q98TC9 N/A
    151040 7e1e:B (3.34) BS01 CA ? N/A Q98TC9 N/A
    151041 7e1e:B (3.34) BS02 CA ? N/A Q98TC9 N/A
    151042 7e1e:C (3.34) BS01 CA ? N/A Q98TC9 N/A
    151043 7e1e:C (3.34) BS02 CA ? N/A Q98TC9 N/A
    151044 7e1h:A (2.805) BS02 MG ? GO:0000160 ... Q87HP4 36647726
    151045 7e1h:B (2.805) BS02 MG ? GO:0000160 ... Q87HP4 36647726
    151046 7e1h:E (2.805) BS02 MG ? GO:0000160 ... Q87HP4 36647726
    151047 7e1t:A (2.45) BS02 MG ? GO:0000139 ... P51151 34793709
    151048 7e1t:B (2.45) BS02 MG ? GO:0000139 ... P51151 34793709
    151049 7e1v:E (2.68) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151050 7e1v:E (2.68) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151051 7e1v:F (2.68) BS01 CU N/A GO:0004129 ... N/A 34819223
    151052 7e1v:Q (2.68) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151053 7e1v:Q (2.68) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151054 7e1v:R (2.68) BS01 CU N/A GO:0004129 ... N/A 34819223
    151055 7e1w:E (2.67) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151056 7e1w:E (2.67) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151057 7e1w:F (2.67) BS01 CU N/A GO:0004129 ... N/A 34819223
    151058 7e1w:Q (2.67) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151059 7e1w:Q (2.67) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151060 7e1w:R (2.67) BS01 CU N/A GO:0004129 ... N/A 34819223
    151061 7e1x:E (2.93) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151062 7e1x:E (2.93) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151063 7e1x:F (2.93) BS01 CU N/A GO:0004129 ... N/A 34819223
    151064 7e1x:Q (2.93) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151065 7e1x:Q (2.93) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34819223
    151066 7e1x:R (2.93) BS01 CU N/A GO:0004129 ... N/A 34819223
    151067 7e1z:A (3.2) BS01 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151068 7e1z:A (3.2) BS02 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151069 7e1z:A (3.2) BS03 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151070 7e1z:A (3.2) BS04 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151071 7e1z:A (3.2) BS05 MG 7.2.2.13 GO:0000166 ... P05023 35803952
    151072 7e20:A (2.7) BS01 K 7.2.2.13 GO:0000166 ... P05023 35803952
    151073 7e20:A (2.7) BS02 K 7.2.2.13 GO:0000166 ... P05023 35803952
    151074 7e20:A (2.7) BS03 K 7.2.2.13 GO:0000166 ... P05023 35803952
    151075 7e20:A (2.7) BS04 MG 7.2.2.13 GO:0000166 ... P05023 35803952
    151076 7e21:A (2.9) BS01 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151077 7e21:A (2.9) BS02 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151078 7e21:A (2.9) BS03 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151079 7e21:A (2.9) BS04 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    151080 7e2b:A (1.85) BS01 MG ? GO:0006629 ... Q8TZI9 N/A
    151081 7e2i:G (4.07) BS01 ZN 3.1.-.- GO:0007267 ... Q15465 34845226
    151082 7e34:B (3.19) BS02 ZN ? GO:0019901 ... Q5MJ70 34039995
    151083 7e35:A (2.4) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 33979649
    151084 7e35:B (2.4) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 33979649
    151085 7e37:A (2.09) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 34969844
    151086 7e37:B (2.09) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 34969844
    151087 7e38:A (2.05) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 34969844
    151088 7e38:B (2.05) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 34969844
    151089 7e3j:A (2.99) BS01 ZN N/A GO:0006508 ... N/A 34234119
    151090 7e3u:A (2.159) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 35198016
    151091 7e3u:A (2.159) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 35198016
    151092 7e3u:B (2.159) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 35198016
    151093 7e3u:B (2.159) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 35198016
    151094 7e3v:A (2.05) BS01 ZN ? GO:0016787 ... Q2FXM0 33950015
    151095 7e3v:A (2.05) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151096 7e3v:B (2.05) BS01 ZN ? GO:0016787 ... Q2FXM0 33950015
    151097 7e3v:B (2.05) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151098 7e3v:C (2.05) BS01 ZN ? GO:0016787 ... Q2FXM0 33950015
    151099 7e3v:C (2.05) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151100 7e3v:D (2.05) BS01 ZN ? GO:0016787 ... Q2FXM0 33950015
    151101 7e3v:D (2.05) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151102 7e3v:E (2.05) BS01 ZN ? GO:0016787 ... Q2FXM0 33950015
    151103 7e3v:E (2.05) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151104 7e3v:F (2.05) BS01 ZN ? GO:0016787 ... Q2FXM0 33950015
    151105 7e3v:F (2.05) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151106 7e3w:A (1.55) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151107 7e3w:A (1.55) BS03 ZN ? GO:0016787 ... Q2FXM0 33950015
    151108 7e3w:B (1.55) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151109 7e3w:B (1.55) BS03 ZN ? GO:0016787 ... Q2FXM0 33950015
    151110 7e3w:C (1.55) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151111 7e3w:C (1.55) BS03 ZN ? GO:0016787 ... Q2FXM0 33950015
    151112 7e3w:D (1.55) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151113 7e3w:D (1.55) BS03 ZN ? GO:0016787 ... Q2FXM0 33950015
    151114 7e3w:E (1.55) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151115 7e3w:E (1.55) BS03 ZN ? GO:0016787 ... Q2FXM0 33950015
    151116 7e3w:F (1.55) BS02 ZN ? GO:0016787 ... Q2FXM0 33950015
    151117 7e3w:F (1.55) BS03 ZN ? GO:0016787 ... Q2FXM0 33950015
    151118 7e44:A (2.0) BS01 ZN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    151119 7e44:B (2.0) BS01 ZN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    151120 7e44:E (2.0) BS02 ZN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    151121 7e44:F (2.0) BS03 ZN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    151122 7e4f:A (2.3) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151123 7e4j:B (1.63) BS01 ZN ? GO:0006355 ... P9WJ53 N/A
    151124 7e4n:A (1.94) BS01 MG N/A N/A N/A N/A
    151125 7e4n:A (1.94) BS02 MG N/A N/A N/A N/A
    151126 7e4p:A (2.4) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    151127 7e4p:C (2.4) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    151128 7e4p:F (2.4) BS02 MG N/A GO:0036211 ... N/A N/A
    151129 7e4q:A (2.501) BS02 CA 3.6.5.- GO:0000226 ... P81947 34144258
    151130 7e4q:C (2.501) BS02 CA 3.6.5.- GO:0000226 ... P81947 34144258
    151131 7e4r:A (2.597) BS02 CA 3.6.5.- GO:0000226 ... P81947 34144258
    151132 7e4r:C (2.597) BS02 CA 3.6.5.- GO:0000226 ... P81947 34144258
    151133 7e4s:A (2.79) BS01 ZN N/A GO:0008697 ... N/A N/A
    151134 7e4s:B (2.79) BS01 ZN N/A GO:0008697 ... N/A N/A
    151135 7e4s:C (2.79) BS01 ZN N/A GO:0008697 ... N/A N/A
    151136 7e4s:D (2.79) BS01 ZN N/A GO:0008697 ... N/A N/A
    151137 7e4s:E (2.79) BS01 ZN N/A GO:0008697 ... N/A N/A
    151138 7e4s:F (2.79) BS01 ZN N/A GO:0008697 ... N/A N/A
    151139 7e4t:A (3.0) BS02 ZN ? GO:0005216 ... Q9UL62 33683200
    151140 7e4t:A (3.0) BS03 CA ? GO:0005216 ... Q9UL62 33683200
    151141 7e4t:B (3.0) BS02 ZN ? GO:0005216 ... Q9UL62 33683200
    151142 7e4t:B (3.0) BS03 CA ? GO:0005216 ... Q9UL62 33683200
    151143 7e4t:C (3.0) BS02 ZN ? GO:0005216 ... Q9UL62 33683200
    151144 7e4t:C (3.0) BS03 CA ? GO:0005216 ... Q9UL62 33683200
    151145 7e4t:D (3.0) BS03 ZN ? GO:0005216 ... Q9UL62 33683200
    151146 7e4t:D (3.0) BS04 CA ? GO:0005216 ... Q9UL62 33683200
    151147 7e4u:A (2.6) BS01 CA 1.11.1.24 GO:0004601 ... A0A671UQR2 N/A
    151148 7e4u:A (2.6) BS02 CA 1.11.1.24 GO:0004601 ... A0A671UQR2 N/A
    151149 7e4u:B (2.6) BS01 CA 1.11.1.24 GO:0004601 ... A0A671UQR2 N/A
    151150 7e4u:D (2.6) BS01 CA 1.11.1.24 GO:0004601 ... A0A671UQR2 N/A
    151151 7e4u:F (2.6) BS01 CA 1.11.1.24 GO:0004601 ... A0A671UQR2 N/A
    151152 7e4u:I (2.6) BS01 CA 1.11.1.24 GO:0004601 ... A0A671UQR2 N/A
    151153 7e4y:A (2.708) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    151154 7e4y:C (2.708) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    151155 7e4y:F (2.708) BS01 MG N/A GO:0036211 ... N/A N/A
    151156 7e4z:A (2.69) BS02 CA 3.6.5.- GO:0000226 ... P81947 34144258
    151157 7e4z:C (2.69) BS02 CA 3.6.5.- GO:0000226 ... P81947 34144258
    151158 7e51:A (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151159 7e51:B (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151160 7e51:C (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151161 7e51:D (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151162 7e51:E (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151163 7e51:F (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151164 7e51:G (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151165 7e51:H (3.23) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    151166 7e5a:B (2.5) BS03 MG 3.6.5.- GO:0003924 ... Q96PP8 33876762
    151167 7e5c:A (2.22) BS01 MN N/A GO:0016795 ... N/A N/A
    151168 7e5c:A (2.22) BS02 MN N/A GO:0016795 ... N/A N/A
    151169 7e5c:B (2.22) BS01 MN N/A GO:0016795 ... N/A N/A
    151170 7e5c:B (2.22) BS02 MN N/A GO:0016795 ... N/A N/A
    151171 7e5c:C (2.22) BS01 MN N/A GO:0016795 ... N/A N/A
    151172 7e5c:C (2.22) BS02 MN N/A GO:0016795 ... N/A N/A
    151173 7e5c:D (2.22) BS01 MN N/A GO:0016795 ... N/A N/A
    151174 7e5c:D (2.22) BS02 MN N/A GO:0016795 ... N/A N/A
    151175 7e60:A (2.24) BS01 ZN N/A N/A N/A N/A
    151176 7e61:A (1.8) BS01 ZN N/A N/A N/A N/A
    151177 7e62:C (1.99) BS01 ZN ? N/A Q99K90 34242591
    151178 7e62:J (1.99) BS01 ZN ? N/A Q99K90 34242591
    151179 7e63:A (2.4) BS01 ZN N/A N/A N/A N/A
    151180 7e63:B (2.4) BS01 ZN N/A N/A N/A N/A
    151181 7e64:A (2.9) BS01 ZN N/A N/A N/A N/A
    151182 7e65:A (2.65) BS01 ZN N/A N/A N/A N/A
    151183 7e65:B (2.65) BS01 ZN N/A N/A N/A N/A
    151184 7e66:A (2.84) BS01 ZN N/A N/A N/A N/A
    151185 7e67:A (2.85) BS01 ZN N/A N/A N/A N/A
    151186 7e69:A (2.61) BS01 ZN N/A N/A N/A N/A
    151187 7e6g:A (2.65) BS01 MG 2.7.7.65 GO:0005886 ... A0A069QEY1 34498587
    151188 7e6q:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... A1ILL9 35423449
    151189 7e6q:B (2.2) BS01 CA 3.2.1.18 GO:0004308 ... A1ILL9 35423449
    151190 7e6t:A (3.0) BS01 CA ? GO:0004930 ... P41180 34467854
    151191 7e6t:A (3.0) BS02 CA ? GO:0004930 ... P41180 34467854
    151192 7e6t:B (3.0) BS01 CA ? GO:0004930 ... P41180 34467854
    151193 7e6t:B (3.0) BS02 CA ? GO:0004930 ... P41180 34467854
    151194 7e7e:A (3.8) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 34404805
    151195 7e7e:B (3.8) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 34404805
    151196 7e7q:A (3.3) BS03 MG 7.6.2.1 GO:0001523 ... P78363 34158497
    151197 7e7q:A (3.3) BS04 MG 7.6.2.1 GO:0001523 ... P78363 34158497
    151198 7e7s:A (3.3) BS01 CA 7.2.2.10 GO:0000045 ... P16615 34459010
    151199 7e7s:A (3.3) BS02 CA 7.2.2.10 GO:0000045 ... P16615 34459010
    151200 7e8d:K (2.8) BS02 ZN 2.1.1.357 GO:0005634 ... O96028 34782608
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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