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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    150801 7dui:K (3.62) BS02 MG ? GO:0003735 ... P80376 N/A
    150802 7dui:N (3.62) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    150803 7dui:Q (3.62) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    150804 7duj:B (3.75) BS02 MG ? GO:0003735 ... P80371 N/A
    150805 7duj:B (3.75) BS03 MG ? GO:0003735 ... P80371 N/A
    150806 7duj:C (3.75) BS02 MG ? GO:0003676 ... P80372 N/A
    150807 7duj:C (3.75) BS03 MG ? GO:0003676 ... P80372 N/A
    150808 7duj:C (3.75) BS04 MG ? GO:0003676 ... P80372 N/A
    150809 7duj:D (3.75) BS02 ZN ? GO:0003723 ... P80373 N/A
    150810 7duj:K (3.75) BS02 MG ? GO:0003735 ... P80376 N/A
    150811 7duj:N (3.75) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    150812 7duj:Q (3.75) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    150813 7duk:B (3.6) BS02 MG ? GO:0003735 ... P80371 N/A
    150814 7duk:B (3.6) BS03 MG ? GO:0003735 ... P80371 N/A
    150815 7duk:C (3.6) BS02 MG ? GO:0003676 ... P80372 N/A
    150816 7duk:C (3.6) BS03 MG ? GO:0003676 ... P80372 N/A
    150817 7duk:C (3.6) BS04 MG ? GO:0003676 ... P80372 N/A
    150818 7duk:J (3.6) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    150819 7duk:N (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    150820 7duk:Q (3.6) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    150821 7dul:B (3.62) BS02 MG ? GO:0003735 ... P80371 N/A
    150822 7dul:B (3.62) BS03 MG ? GO:0003735 ... P80371 N/A
    150823 7dul:C (3.62) BS02 MG ? GO:0003676 ... P80372 N/A
    150824 7dul:C (3.62) BS03 MG ? GO:0003676 ... P80372 N/A
    150825 7dul:C (3.62) BS04 MG ? GO:0003676 ... P80372 N/A
    150826 7dul:J (3.62) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    150827 7dul:K (3.62) BS02 MG ? GO:0003735 ... P80376 N/A
    150828 7dul:N (3.62) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    150829 7dul:Q (3.62) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    150830 7dux:A (1.981) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150831 7dux:A (1.981) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150832 7duy:A (1.999) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150833 7duy:A (1.999) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150834 7duz:A (1.6) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150835 7duz:A (1.6) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150836 7duz:B (1.6) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150837 7duz:B (1.6) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150838 7dv0:A (1.601) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150839 7dv0:A (1.601) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150840 7dv1:A (1.966) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150841 7dv1:A (1.966) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150842 7dv1:B (1.966) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150843 7dv1:B (1.966) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150844 7dvd:A (2.59) BS01 ZN ? GO:0000976 ... P04637 33631672
    150845 7dvd:B (2.59) BS02 ZN ? GO:0000976 ... P04637 33631672
    150846 7dvd:C (2.59) BS01 ZN ? GO:0000976 ... P04637 33631672
    150847 7dvd:D (2.59) BS01 ZN ? GO:0000976 ... P04637 33631672
    150848 7dvl:A (2.006) BS01 ZN ? GO:0004222 ... D3IV24 33891946
    150849 7dvl:B (2.006) BS01 ZN ? GO:0004222 ... D3IV24 33891946
    150850 7dvq:0 (2.89) BS01 ZN ? GO:0005515 ... Q9P021 33509932
    150851 7dvq:0 (2.89) BS02 ZN ? GO:0005515 ... Q9P021 33509932
    150852 7dvq:6 (2.89) BS03 ZN ? GO:0000398 ... Q7RTV0 33509932
    150853 7dvq:6 (2.89) BS04 ZN ? GO:0000398 ... Q7RTV0 33509932
    150854 7dvq:6 (2.89) BS05 ZN ? GO:0000398 ... Q7RTV0 33509932
    150855 7dvq:M (2.89) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 33509932
    150856 7dvq:v (2.89) BS03 ZN ? GO:0000380 ... Q9BWG6 33509932
    150857 7dw7:A (1.8) BS02 MG 6.3.5.3 GO:0004642 ... P74881 N/A
    150858 7dwx:B (8.3) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0001618 ... Q9BYF1 33737693
    150859 7dwx:D (8.3) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0001618 ... Q9BYF1 33737693
    150860 7dxa:a (3.14) BS08 FE2 1.10.3.9 GO:0005506 ... P51765 34226692
    150861 7dxa:d (3.14) BS07 FE2 1.10.3.9 GO:0009523 ... D0VWR8 34226692
    150862 7dxb:A (2.7) BS03 ZN ? GO:0005216 ... Q13507 35051376
    150863 7dxb:A (2.7) BS04 CA ? GO:0005216 ... Q13507 35051376
    150864 7dxb:A (2.7) BS05 CA ? GO:0005216 ... Q13507 35051376
    150865 7dxb:A (2.7) BS06 CA ? GO:0005216 ... Q13507 35051376
    150866 7dxb:B (2.7) BS04 ZN ? GO:0005216 ... Q13507 35051376
    150867 7dxb:B (2.7) BS05 CA ? GO:0005216 ... Q13507 35051376
    150868 7dxb:B (2.7) BS06 CA ? GO:0005216 ... Q13507 35051376
    150869 7dxb:B (2.7) BS07 CA ? GO:0005216 ... Q13507 35051376
    150870 7dxb:C (2.7) BS04 ZN ? GO:0005216 ... Q13507 35051376
    150871 7dxb:C (2.7) BS05 CA ? GO:0005216 ... Q13507 35051376
    150872 7dxb:C (2.7) BS06 CA ? GO:0005216 ... Q13507 35051376
    150873 7dxb:C (2.7) BS07 CA ? GO:0005216 ... Q13507 35051376
    150874 7dxb:D (2.7) BS05 ZN ? GO:0005216 ... Q13507 35051376
    150875 7dxb:D (2.7) BS06 CA ? GO:0005216 ... Q13507 35051376
    150876 7dxb:D (2.7) BS07 CA ? GO:0005216 ... Q13507 35051376
    150877 7dxb:D (2.7) BS08 CA ? GO:0005216 ... Q13507 35051376
    150878 7dxc:A (3.06) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150879 7dxc:B (3.06) BS04 ZN ? GO:0005216 ... Q13507 35051376
    150880 7dxc:C (3.06) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150881 7dxc:D (3.06) BS04 ZN ? GO:0005216 ... Q13507 35051376
    150882 7dxd:A (3.9) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150883 7dxd:A (3.9) BS03 CA ? GO:0005216 ... Q13507 35051376
    150884 7dxd:B (3.9) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150885 7dxd:B (3.9) BS03 CA ? GO:0005216 ... Q13507 35051376
    150886 7dxd:C (3.9) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150887 7dxd:C (3.9) BS03 CA ? GO:0005216 ... Q13507 35051376
    150888 7dxd:D (3.9) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150889 7dxd:D (3.9) BS03 CA ? GO:0005216 ... Q13507 35051376
    150890 7dxe:A (3.2) BS04 ZN ? GO:0005216 ... Q13507 35051376
    150891 7dxe:B (3.2) BS03 ZN ? GO:0005216 ... Q13507 35051376
    150892 7dxe:C (3.2) BS05 ZN ? GO:0005216 ... Q13507 35051376
    150893 7dxe:D (3.2) BS02 ZN ? GO:0005216 ... Q13507 35051376
    150894 7dxf:A (2.9) BS01 ZN ? GO:0005216 ... Q9Y210 35051376
    150895 7dxf:A (2.9) BS04 CA ? GO:0005216 ... Q9Y210 35051376
    150896 7dxf:A (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150897 7dxf:A (2.9) BS11 CA ? GO:0005216 ... Q9Y210 35051376
    150898 7dxf:B (2.9) BS01 CA ? GO:0005216 ... Q9Y210 35051376
    150899 7dxf:B (2.9) BS02 ZN ? GO:0005216 ... Q9Y210 35051376
    150900 7dxf:B (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150901 7dxf:B (2.9) BS06 CA ? GO:0005216 ... Q9Y210 35051376
    150902 7dxf:C (2.9) BS01 CA ? GO:0005216 ... Q9Y210 35051376
    150903 7dxf:C (2.9) BS02 ZN ? GO:0005216 ... Q9Y210 35051376
    150904 7dxf:C (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150905 7dxf:C (2.9) BS06 CA ? GO:0005216 ... Q9Y210 35051376
    150906 7dxf:D (2.9) BS03 CA ? GO:0005216 ... Q9Y210 35051376
    150907 7dxf:D (2.9) BS05 ZN ? GO:0005216 ... Q9Y210 35051376
    150908 7dxf:D (2.9) BS08 CA ? GO:0005216 ... Q9Y210 35051376
    150909 7dxf:D (2.9) BS09 CA ? GO:0005216 ... Q9Y210 35051376
    150910 7dxg:A (2.9) BS01 ZN ? GO:0005216 ... Q9Y210 35051376
    150911 7dxg:A (2.9) BS02 CA ? GO:0005216 ... Q9Y210 35051376
    150912 7dxg:A (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150913 7dxg:B (2.9) BS01 ZN ? GO:0005216 ... Q9Y210 35051376
    150914 7dxg:B (2.9) BS02 CA ? GO:0005216 ... Q9Y210 35051376
    150915 7dxg:B (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150916 7dxg:C (2.9) BS04 ZN ? GO:0005216 ... Q9Y210 35051376
    150917 7dxg:C (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150918 7dxg:C (2.9) BS08 CA ? GO:0005216 ... Q9Y210 35051376
    150919 7dxg:D (2.9) BS04 ZN ? GO:0005216 ... Q9Y210 35051376
    150920 7dxg:D (2.9) BS05 CA ? GO:0005216 ... Q9Y210 35051376
    150921 7dxg:D (2.9) BS08 CA ? GO:0005216 ... Q9Y210 35051376
    150922 7dxh:a (3.14) BS09 FE2 1.10.3.9 GO:0005506 ... P51765 34226692
    150923 7dxh:d (3.14) BS07 FE2 1.10.3.9 GO:0009523 ... D0VWR8 34226692
    150924 7dxi:A (3.53) BS01 CA ? GO:0016772 ... A1Z7S7 35148990
    150925 7dxi:B (3.53) BS01 CA ? GO:0016772 ... A1Z7S7 35148990
    150926 7dxq:B (2.8) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150927 7dxq:E (2.8) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150928 7dxq:F (2.8) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150929 7dy2:C (3.04) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150930 7dy2:D (3.04) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150931 7dy2:E (3.04) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150932 7dy2:G (3.04) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150933 7dy2:H (3.04) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150934 7dy2:J (3.04) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150935 7dy6:D (3.68) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 34735884
    150936 7dy6:D (3.68) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 34735884
    150937 7dy6:D (3.68) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 34735884
    150938 7dy8:A (2.103) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150939 7dy8:A (2.103) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150940 7dy8:A (2.103) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150941 7dy8:A (2.103) BS04 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150942 7dy8:A (2.103) BS05 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150943 7dy8:H (2.103) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150944 7dy8:H (2.103) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150945 7dy8:H (2.103) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150946 7dya:A (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150947 7dya:A (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150948 7dya:A (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150949 7dya:B (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150950 7dya:B (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150951 7dya:B (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150952 7dya:C (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150953 7dya:C (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150954 7dya:C (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150955 7dya:D (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150956 7dya:D (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150957 7dya:D (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150958 7dya:E (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150959 7dya:E (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150960 7dya:E (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150961 7dya:F (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150962 7dya:F (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150963 7dya:F (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150964 7dya:G (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150965 7dya:G (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150966 7dya:G (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150967 7dya:H (2.197) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150968 7dya:H (2.197) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150969 7dya:H (2.197) BS03 CA 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150970 7dyb:A (1.779) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150971 7dyb:A (1.779) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150972 7dyb:B (1.779) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150973 7dyb:B (1.779) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150974 7dyb:H (1.779) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150975 7dyb:H (1.779) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34381032
    150976 7dyg:A (2.0) BS02 FE 1.14.11.66 N/A Q6B0I6 N/A
    150977 7dyk:A (2.99) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    150978 7dyq:A (1.998) BS02 FE 1.14.11.66 N/A Q6B0I6 N/A
    150979 7dyt:A (1.62) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 37527664
    150980 7dyu:A (1.72) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 37527664
    150981 7dyv:A (1.92) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 37527664
    150982 7dyw:A (2.13) BS02 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 37527664
    150983 7dyx:A (2.27) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 37527664
    150984 7dyy:A (1.798) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150985 7dyy:A (1.798) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150986 7dyy:B (1.798) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150987 7dyy:B (1.798) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150988 7dyz:A (1.902) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150989 7dyz:A (1.902) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150990 7dz0:A (3.227) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150991 7dz0:A (3.227) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150992 7dz0:B (3.227) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150993 7dz0:B (3.227) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150994 7dz1:A (2.708) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150995 7dz1:A (2.708) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150996 7dz1:B (2.708) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150997 7dz1:B (2.708) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34763944
    150998 7dz2:A (1.55) BS01 MG N/A N/A N/A N/A
    150999 7dz2:B (1.55) BS01 MG N/A N/A N/A N/A
    151000 7dz2:C (1.55) BS01 MG N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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