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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    149601 7coa:A (1.698) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149602 7coa:A (1.698) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149603 7cob:A (1.797) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149604 7cob:A (1.797) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149605 7coc:A (1.9) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149606 7coc:A (1.9) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149607 7cod:A (1.8) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149608 7cod:A (1.8) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 34145298
    149609 7cof:A (1.084) BS01 CA ? GO:0016787 ... A0A1Y1BQV9 N/A
    149610 7cog:A (2.098) BS01 CA ? GO:0016787 ... A0A1Y1BQV9 N/A
    149611 7cog:B (2.098) BS01 CA ? GO:0016787 ... A0A1Y1BQV9 N/A
    149612 7cog:C (2.098) BS01 CA ? GO:0016787 ... A0A1Y1BQV9 N/A
    149613 7cog:D (2.098) BS01 CA ? GO:0016787 ... A0A1Y1BQV9 N/A
    149614 7coh:A (1.3) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    149615 7coh:A (1.3) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    149616 7coh:F (1.3) BS01 ZN ? GO:0005740 ... P00428 N/A
    149617 7coh:N (1.3) BS04 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    149618 7coh:N (1.3) BS05 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    149619 7coh:S (1.3) BS01 ZN ? GO:0005740 ... P00428 N/A
    149620 7coi:A (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149621 7coi:B (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149622 7coi:C (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149623 7coi:D (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149624 7coj:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149625 7coj:B (2.0) BS02 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149626 7coj:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149627 7coj:D (2.0) BS02 ZN 4.2.1.1 GO:0004089 ... Q4WQ18 32975213
    149628 7coq:C (3.44) BS01 MG 7.2.2.1 GO:0005515 ... Q08636 N/A
    149629 7cou:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 33953929
    149630 7cou:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 33953929
    149631 7cou:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    149632 7cou:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 33953929
    149633 7cou:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 33953929
    149634 7cou:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 33953929
    149635 7cou:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 33953929
    149636 7cou:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 33953929
    149637 7cou:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    149638 7cou:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 33953929
    149639 7cou:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 33953929
    149640 7coz:A (1.85) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 33373636
    149641 7coz:B (1.85) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 33373636
    149642 7coz:C (1.85) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 33373636
    149643 7cp0:A (1.7) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 33373636
    149644 7cp0:B (1.7) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 33373636
    149645 7cp0:C (1.7) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 33373636
    149646 7cp1:A (2.58) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 33951112
    149647 7cp1:B (2.58) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 33951112
    149648 7cp5:A (1.76) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    149649 7cp5:A (1.76) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    149650 7cp5:F (1.76) BS01 ZN ? GO:0005740 ... P00428 34274318
    149651 7cp5:N (1.76) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    149652 7cp5:N (1.76) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    149653 7cp5:S (1.76) BS01 ZN ? GO:0005740 ... P00428 34274318
    149654 7cpa:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 1868092
    149655 7cpc:A (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149656 7cpc:B (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149657 7cpc:C (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149658 7cpc:D (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149659 7cpc:E (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149660 7cpc:F (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149661 7cpd:A (2.506) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    149662 7cpd:B (2.506) BS02 CA ? GO:0000226 ... Q6B856 N/A
    149663 7cph:A (2.3) BS01 ZN 3.5.4.33 GO:0002100 ... P21335 34037063
    149664 7cph:B (2.3) BS01 ZN 3.5.4.33 GO:0002100 ... P21335 34037063
    149665 7cpi:A (2.602) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149666 7cpi:A (2.602) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149667 7cpi:B (2.602) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149668 7cpi:B (2.602) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149669 7cpi:C (2.602) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149670 7cpi:C (2.602) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149671 7cpi:D (2.602) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149672 7cpi:D (2.602) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149673 7cpi:E (2.602) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149674 7cpi:E (2.602) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149675 7cpi:F (2.602) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149676 7cpi:F (2.602) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    149677 7cpk:A (1.6) BS01 CA 3.2.1.8 GO:0004553 ... P07528 33604642
    149678 7cpk:A (1.6) BS02 CA 3.2.1.8 GO:0004553 ... P07528 33604642
    149679 7cpk:A (1.6) BS03 CA 3.2.1.8 GO:0004553 ... P07528 33604642
    149680 7cpl:A (1.52) BS01 CA 3.2.1.8 GO:0004553 ... P07528 33604642
    149681 7cpl:A (1.52) BS02 CA 3.2.1.8 GO:0004553 ... P07528 33604642
    149682 7cpl:A (1.52) BS03 CA 3.2.1.8 GO:0004553 ... P07528 33604642
    149683 7cpq:A (2.595) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    149684 7cpq:B (2.595) BS03 CA ? GO:0000226 ... Q6B856 N/A
    149685 7cpq:D (2.595) BS02 MG ? GO:0000226 ... Q6B856 N/A
    149686 7cpu:LA (2.82) BS03 MG ? GO:0002181 ... P62918 36517592
    149687 7cpu:LT (2.82) BS03 MG ? GO:0002181 ... O09167 36517592
    149688 7cpu:LV (2.82) BS03 MG ? GO:0000122 ... P62830 36517592
    149689 7cpu:Le (2.82) BS02 MG ? GO:0002181 ... P62911 36517592
    149690 7cpu:Lf (2.82) BS02 MG ? GO:0002181 ... O55142 36517592
    149691 7cpu:Lg (2.82) BS02 MG ? GO:0002181 ... Q9D1R9 36517592
    149692 7cpu:Lj (2.82) BS03 ZN ? GO:0002181 ... Q9D823 36517592
    149693 7cpu:Lm (2.82) BS02 ZN ? GO:0002181 ... P62984 36517592
    149694 7cpu:Lo (2.82) BS03 ZN ? GO:0002181 ... P83882 36517592
    149695 7cpu:Lp (2.82) BS02 ZN ? GO:0002181 ... P61514 36517592
    149696 7cpu:SF (2.82) BS02 MG ? GO:0002181 ... P97461 36517592
    149697 7cpu:Sa (2.82) BS02 ZN ? GO:0002181 ... P62855 36517592
    149698 7cpu:Sd (2.82) BS02 ZN ? GO:0002181 ... P62274 36517592
    149699 7cpu:Sd (2.82) BS03 MG ? GO:0002181 ... P62274 36517592
    149700 7cpv:LA (3.03) BS03 MG ? GO:0002181 ... P62918 36517592
    149701 7cpv:LA (3.03) BS04 MG ? GO:0002181 ... P62918 36517592
    149702 7cpv:Le (3.03) BS02 MG ? GO:0002181 ... P62911 36517592
    149703 7cpv:Lf (3.03) BS02 MG ? GO:0002181 ... O55142 36517592
    149704 7cpv:Lg (3.03) BS02 ZN ? GO:0002181 ... Q9D1R9 36517592
    149705 7cpv:Lm (3.03) BS02 ZN ? GO:0002181 ... P62984 36517592
    149706 7cpv:Lo (3.03) BS03 ZN ? GO:0002181 ... P83882 36517592
    149707 7cpv:Lp (3.03) BS03 ZN ? GO:0002181 ... P61514 36517592
    149708 7cpv:Sa (3.03) BS02 ZN ? GO:0002181 ... P62855 36517592
    149709 7cpv:Sd (3.03) BS02 ZN ? GO:0002181 ... P62274 36517592
    149710 7cq2:A (2.5) BS01 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149711 7cq2:A (2.5) BS02 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149712 7cq2:B (2.5) BS01 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149713 7cq2:B (2.5) BS02 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149714 7cq3:A (1.449) BS01 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149715 7cq3:A (1.449) BS02 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149716 7cq4:A (3.294) BS03 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149717 7cq4:A (3.294) BS04 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    149718 7cqh:B (2.15) BS02 CA ? GO:0005509 ... P62152 33326749
    149719 7cqh:B (2.15) BS03 CA ? GO:0005509 ... P62152 33326749
    149720 7cqp:B (1.9) BS02 CA ? GO:0005509 ... P0DP26 33326749
    149721 7cqp:B (1.9) BS03 CA ? GO:0005509 ... P0DP26 33326749
    149722 7cqq:A (2.295) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149723 7cqq:A (2.295) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149724 7cqq:A (2.295) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149725 7cqq:B (2.295) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149726 7cqq:B (2.295) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149727 7cqq:B (2.295) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149728 7cqq:C (2.295) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149729 7cqq:C (2.295) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149730 7cqq:C (2.295) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149731 7cqr:A (1.947) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    149732 7cqs:A (1.998) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    149733 7cqu:A (2.06) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149734 7cqu:A (2.06) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149735 7cqu:A (2.06) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149736 7cqu:B (2.06) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149737 7cqu:B (2.06) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149738 7cqu:B (2.06) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149739 7cqu:C (2.06) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149740 7cqu:C (2.06) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149741 7cqu:C (2.06) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    149742 7cqv:A (1.78) BS01 CA ? GO:0005509 ... C6SUZ2 33326749
    149743 7cqv:A (1.78) BS02 CA ? GO:0005509 ... C6SUZ2 33326749
    149744 7cqv:E (1.78) BS01 CA ? GO:0005509 ... C6SUZ2 33326749
    149745 7cqv:E (1.78) BS02 CA ? GO:0005509 ... C6SUZ2 33326749
    149746 7cro:I (3.75) BS03 ZN 2.1.1.357 GO:0005634 ... O96028 33361816
    149747 7cro:I (3.75) BS04 ZN 2.1.1.357 GO:0005634 ... O96028 33361816
    149748 7cro:I (3.75) BS05 ZN 2.1.1.357 GO:0005634 ... O96028 33361816
    149749 7crp:I (3.2) BS04 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149750 7crp:I (3.2) BS05 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149751 7crq:I (3.15) BS03 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149752 7crq:I (3.15) BS04 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149753 7crq:L (3.15) BS03 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149754 7crq:L (3.15) BS04 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149755 7crr:I (3.48) BS02 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149756 7crr:I (3.48) BS03 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149757 7crr:I (3.48) BS04 ZN 2.1.1.370
    2.1.1.371
    GO:0005634 ... Q9BZ95 33361816
    149758 7cs0:A (2.05) BS03 CA 2.3.1.- GO:0016746 ... P94968 33299080
    149759 7cs0:B (2.05) BS03 CA 2.3.1.- GO:0016746 ... P94968 33299080
    149760 7cts:A (1.1) BS01 CA 3.1.1.74 N/A W0TJ64 33340163
    149761 7ctt:A (3.2) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 33521757
    149762 7ctt:A (3.2) BS04 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 33521757
    149763 7ctv:B (2.88561) BS01 MG 2.7.10.1
    2.7.11.1
    GO:0004672 ... Q9SKB2 N/A
    149764 7ctx:A (2.907) BS02 MG 2.7.10.1
    2.7.11.1
    GO:0004672 ... Q9SKB2 N/A
    149765 7ctx:B (2.907) BS02 MG 2.7.10.1
    2.7.11.1
    GO:0004672 ... Q9SKB2 N/A
    149766 7cub:A (2.55) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 34417297
    149767 7cun:K (3.5) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 33243860
    149768 7cun:K (3.5) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 33243860
    149769 7cun:Q (3.5) BS01 MN 3.1.3.16 GO:0000159 ... P67775 33243860
    149770 7cun:Q (3.5) BS02 MN 3.1.3.16 GO:0000159 ... P67775 33243860
    149771 7cup:A (2.0) BS01 FE 1.13.11.9 GO:0009056 ... Q88FY1 N/A
    149772 7cup:B (2.0) BS01 FE 1.13.11.9 GO:0009056 ... Q88FY1 N/A
    149773 7cup:C (2.0) BS01 FE 1.13.11.9 GO:0009056 ... Q88FY1 N/A
    149774 7cup:D (2.0) BS01 FE 1.13.11.9 GO:0009056 ... Q88FY1 N/A
    149775 7cup:E (2.0) BS01 FE 1.13.11.9 GO:0009056 ... Q88FY1 N/A
    149776 7cup:F (2.0) BS01 FE 1.13.11.9 GO:0009056 ... Q88FY1 N/A
    149777 7cuq:A (2.64) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 34417297
    149778 7cuw:A (2.63) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 34417297
    149779 7cux:B (3.29477) BS01 ZN ? N/A Q08AF3 N/A
    149780 7cux:C (3.29477) BS01 ZN ? N/A Q08AF3 N/A
    149781 7cux:D (3.29477) BS01 ZN ? N/A Q08AF3 N/A
    149782 7cux:E (3.29477) BS01 ZN ? N/A Q08AF3 N/A
    149783 7cux:F (3.29477) BS01 ZN ? N/A Q08AF3 N/A
    149784 7cv0:A (1.998) BS01 ZN ? GO:0036094 ... Q9KDJ7 33273654
    149785 7cv2:A (1.802) BS02 ZN ? GO:0036094 ... Q9KDJ7 33273654
    149786 7cvh:A (2.09) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149787 7cvh:A (2.09) BS03 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149788 7cvh:B (2.09) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149789 7cvh:B (2.09) BS03 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149790 7cvh:C (2.09) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149791 7cvh:C (2.09) BS03 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149792 7cvh:D (2.09) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149793 7cvh:D (2.09) BS03 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149794 7cvk:A (1.7) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    149795 7cvk:A (1.7) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    149796 7cvm:A (2.0) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    149797 7cvm:A (2.0) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    149798 7cvw:A (1.54) BS01 MG 2.1.1.6 GO:0008168 ... G8T6H8 N/A
    149799 7cvw:B (1.54) BS01 MG 2.1.1.6 GO:0008168 ... G8T6H8 N/A
    149800 7cvx:A (1.7) BS02 MG 2.1.1.6 GO:0008168 ... G8T6H8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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