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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    149001 7c23:A (1.9) BS01 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    149002 7c23:A (1.9) BS02 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    149003 7c23:A (1.9) BS03 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    149004 7c29:A (2.18) BS01 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    149005 7c29:B (2.18) BS01 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    149006 7c2g:G (1.71) BS01 CA ? GO:0005546 ... A0A135VHY8 N/A
    149007 7c2g:G (1.71) BS02 CA ? GO:0005546 ... A0A135VHY8 N/A
    149008 7c2g:G (1.71) BS03 CA ? GO:0005546 ... A0A135VHY8 N/A
    149009 7c2g:G (1.71) BS04 CA ? GO:0005546 ... A0A135VHY8 N/A
    149010 7c2g:G (1.71) BS05 CA ? GO:0005546 ... A0A135VHY8 N/A
    149011 7c2h:G (2.352) BS01 CA ? GO:0005546 ... A0A135VDL7 N/A
    149012 7c2h:G (2.352) BS02 CA ? GO:0005546 ... A0A135VDL7 N/A
    149013 7c2h:G (2.352) BS03 CA ? GO:0005546 ... A0A135VDL7 N/A
    149014 7c2h:G (2.352) BS04 CA ? GO:0005546 ... A0A135VDL7 N/A
    149015 7c2i:B (2.5) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32728018
    149016 7c2i:B (2.5) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32728018
    149017 7c2j:B (2.799) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32728018
    149018 7c2j:B (2.799) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32728018
    149019 7c2k:A (2.93) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32526208
    149020 7c2k:A (2.93) BS04 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32526208
    149021 7c2o:A (2.9) BS01 ZN ? GO:0000166 ... M4VRJ6 N/A
    149022 7c2o:B (2.9) BS01 ZN ? GO:0000166 ... M4VRJ6 N/A
    149023 7c2o:B (2.9) BS02 ZN ? GO:0000166 ... M4VRJ6 N/A
    149024 7c3s:A (1.66) BS01 ZN ? GO:0003824 ... Q82Y41 34010666
    149025 7c3s:B (1.66) BS01 ZN ? GO:0003824 ... Q82Y41 34010666
    149026 7c3t:A (2.07) BS01 ZN ? GO:0003824 ... Q82Y41 34010666
    149027 7c3t:B (2.07) BS01 ZN ? GO:0003824 ... Q82Y41 34010666
    149028 7c3u:A (1.86) BS01 ZN ? GO:0003824 ... Q82Y41 34010666
    149029 7c3u:B (1.86) BS01 ZN ? GO:0003824 ... Q82Y41 34010666
    149030 7c41:A (2.276) BS03 MG 3.6.5.2 GO:0003924 ... P01116 32486141
    149031 7c41:G (2.276) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32486141
    149032 7c42:A (2.0) BS01 ZN ? GO:0000166 ... Q38DE2 33332555
    149033 7c42:A (2.0) BS02 ZN ? GO:0000166 ... Q38DE2 33332555
    149034 7c43:A (2.3) BS01 ZN ? GO:0000166 ... Q38DE2 33332555
    149035 7c43:A (2.3) BS02 ZN ? GO:0000166 ... Q38DE2 33332555
    149036 7c43:A (2.3) BS03 MN ? GO:0000166 ... Q38DE2 33332555
    149037 7c45:A (1.769) BS02 ZN ? GO:0003676 ... Q38DE2 33332555
    149038 7c45:A (1.769) BS03 ZN ? GO:0003676 ... Q38DE2 33332555
    149039 7c45:A (1.769) BS04 CA ? GO:0003676 ... Q38DE2 33332555
    149040 7c47:A (2.2) BS01 ZN ? GO:0000166 ... Q38DE2 33332555
    149041 7c47:A (2.2) BS02 ZN ? GO:0000166 ... Q38DE2 33332555
    149042 7c47:A (2.2) BS05 MN ? GO:0000166 ... Q38DE2 33332555
    149043 7c47:A (2.2) BS06 MN ? GO:0000166 ... Q38DE2 33332555
    149044 7c4b:A (2.101) BS01 ZN ? GO:0000166 ... Q38DE2 33332555
    149045 7c4b:A (2.101) BS02 ZN ? GO:0000166 ... Q38DE2 33332555
    149046 7c4b:A (2.101) BS03 MN ? GO:0000166 ... Q38DE2 33332555
    149047 7c4b:A (2.101) BS04 MN ? GO:0000166 ... Q38DE2 33332555
    149048 7c4c:A (2.265) BS01 ZN ? GO:0000166 ... Q38DE2 33332555
    149049 7c4c:A (2.265) BS02 ZN ? GO:0000166 ... Q38DE2 33332555
    149050 7c4c:A (2.265) BS03 ZN ? GO:0000166 ... Q38DE2 33332555
    149051 7c4c:A (2.265) BS04 ZN ? GO:0000166 ... Q38DE2 33332555
    149052 7c4c:A (2.265) BS05 ZN ? GO:0000166 ... Q38DE2 33332555
    149053 7c4c:A (2.265) BS06 ZN ? GO:0000166 ... Q38DE2 33332555
    149054 7c4c:A (2.265) BS07 MN ? GO:0000166 ... Q38DE2 33332555
    149055 7c4c:A (2.265) BS08 MN ? GO:0000166 ... Q38DE2 33332555
    149056 7c4c:A (2.265) BS09 MN ? GO:0000166 ... Q38DE2 33332555
    149057 7c52:1 (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    149058 7c52:3 (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    149059 7c52:5 (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    149060 7c52:7 (2.89) BS05 CA ? GO:0005515 ... D2Z0P2 33597527
    149061 7c52:9 (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    149062 7c52:A (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    149063 7c52:C (2.89) BS05 CA ? GO:0005506 ... D2Z0P5 33597527
    149064 7c52:D (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    149065 7c52:F (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    149066 7c52:I (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    149067 7c52:K (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    149068 7c52:L (2.89) BS10 FE ? GO:0005515 ... D2Z0P3 33597527
    149069 7c52:M (2.89) BS07 FE ? GO:0005515 ... A8ASG6 33597527
    149070 7c52:O (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    149071 7c52:Q (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    149072 7c52:S (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    149073 7c52:U (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    149074 7c52:W (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    149075 7c52:Y (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    149076 7c53:E (2.278) BS01 CA ? GO:0016020 ... P0DTC2 34326308
    149077 7c73:A (2.7) BS02 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    149078 7c73:A (2.7) BS03 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    149079 7c74:A (2.73) BS01 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    149080 7c75:A (2.7) BS01 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    149081 7c75:A (2.7) BS03 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    149082 7c75:A (2.7) BS04 ZN 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    149083 7c7a:K (2.8) BS02 ZN ? GO:0000172 ... P40993 32586950
    149084 7c7d:A (1.16) BS01 CA 3.2.1.59 N/A A0A7G1KW31 33041007
    149085 7c7d:B (1.16) BS01 CA 3.2.1.59 N/A A0A7G1KW31 33041007
    149086 7c7e:A (2.047) BS01 ZN ? GO:0003677 ... A0A0H3MRW3 33224125
    149087 7c7i:A (2.28) BS02 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    149088 7c7i:A (2.28) BS03 MG 3.6.5.2 GO:0003924 ... P61224 N/A
    149089 7c7i:B (2.28) BS01 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    149090 7c7i:B (2.28) BS03 MG 3.6.5.2 GO:0003924 ... P61224 N/A
    149091 7c7j:A (2.39) BS02 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    149092 7c7j:A (2.39) BS03 MG 3.6.5.2 GO:0003924 ... P61224 N/A
    149093 7c7j:B (2.39) BS01 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    149094 7c7j:B (2.39) BS03 MG 3.6.5.2 GO:0003924 ... P61224 N/A
    149095 7c7l:A (3.3) BS04 ZN 3.1.-.- GO:0003677 ... A0A482D308 33333018
    149096 7c7l:A (3.3) BS05 ZN 3.1.-.- GO:0003677 ... A0A482D308 33333018
    149097 7c7l:B (3.3) BS04 ZN 3.1.-.- GO:0003677 ... A0A482D308 33333018
    149098 7c7r:A (3.07) BS01 CA ? GO:0005509 ... Q79LN3 34046916
    149099 7c7r:A (3.07) BS02 CA ? GO:0005509 ... Q79LN3 34046916
    149100 7c7r:A (3.07) BS03 CA ? GO:0005509 ... Q79LN3 34046916
    149101 7c7r:A (3.07) BS04 CA ? GO:0005509 ... Q79LN3 34046916
    149102 7c7r:A (3.07) BS05 CA ? GO:0005509 ... Q79LN3 34046916
    149103 7c7r:B (3.07) BS01 CA ? GO:0005509 ... Q79LN3 34046916
    149104 7c7r:B (3.07) BS02 CA ? GO:0005509 ... Q79LN3 34046916
    149105 7c7r:B (3.07) BS03 CA ? GO:0005509 ... Q79LN3 34046916
    149106 7c7r:B (3.07) BS04 CA ? GO:0005509 ... Q79LN3 34046916
    149107 7c7r:B (3.07) BS05 CA ? GO:0005509 ... Q79LN3 34046916
    149108 7c7u:A (1.93) BS01 CA ? N/A Q79LN3 34046916
    149109 7c7u:A (1.93) BS02 CA ? N/A Q79LN3 34046916
    149110 7c7u:A (1.93) BS03 CA ? N/A Q79LN3 34046916
    149111 7c7u:A (1.93) BS04 CA ? N/A Q79LN3 34046916
    149112 7c7u:A (1.93) BS05 CA ? N/A Q79LN3 34046916
    149113 7c7u:B (1.93) BS01 CA ? N/A Q79LN3 34046916
    149114 7c7u:B (1.93) BS02 CA ? N/A Q79LN3 34046916
    149115 7c7u:B (1.93) BS03 CA ? N/A Q79LN3 34046916
    149116 7c7u:B (1.93) BS04 CA ? N/A Q79LN3 34046916
    149117 7c7u:B (1.93) BS05 CA ? N/A Q79LN3 34046916
    149118 7c8d:A (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0001618 ... Q56H28 33020722
    149119 7c8h:A (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149120 7c8h:B (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149121 7c8h:C (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149122 7c8h:D (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149123 7c8h:E (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149124 7c8h:F (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149125 7c8h:G (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149126 7c8h:H (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149127 7c8i:A (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149128 7c8i:B (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149129 7c8i:C (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149130 7c8i:D (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149131 7c8i:E (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149132 7c8i:F (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149133 7c8i:G (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149134 7c8i:H (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    149135 7c8j:A (3.18) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0004180 ... E2DHI3 33335073
    149136 7c8k:A (3.2) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... E2DHI3 33335073
    149137 7c8q:A (1.89) BS02 MG N/A GO:0004067 ... N/A 33371681
    149138 7c8q:B (1.89) BS03 MG N/A GO:0004067 ... N/A 33371681
    149139 7c8q:B (1.89) BS04 MG N/A GO:0004067 ... N/A 33371681
    149140 7c8q:B (1.89) BS05 MG N/A GO:0004067 ... N/A 33371681
    149141 7c8x:A (1.994) BS02 MG N/A GO:0004067 ... N/A 33371681
    149142 7c8x:B (1.994) BS02 MG N/A GO:0004067 ... N/A 33371681
    149143 7c8x:B (1.994) BS03 MG N/A GO:0004067 ... N/A 33371681
    149144 7c8z:A (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    149145 7c8z:C (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    149146 7c8z:E (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    149147 7c8z:G (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    149148 7c90:A (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    149149 7c90:B (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    149150 7c90:C (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    149151 7c90:D (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    149152 7c91:A (1.98) BS03 MG ? GO:0004067 ... A0A6I7U6Y2 33371681
    149153 7c91:B (1.98) BS02 MG ? GO:0004067 ... A0A6I7U6Y2 33371681
    149154 7c91:B (1.98) BS03 MG ? GO:0004067 ... A0A6I7U6Y2 33371681
    149155 7c97:D (3.68) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 N/A
    149156 7c97:D (3.68) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 N/A
    149157 7c97:D (3.68) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 N/A
    149158 7c98:B (3.47) BS03 CA ? GO:0000150 ... Q14565 33446654
    149159 7c99:A (3.36) BS03 CA ? GO:0000150 ... Q14565 33446654
    149160 7c99:B (3.36) BS03 CA ? GO:0000150 ... Q14565 33446654
    149161 7c99:C (3.36) BS04 CA ? GO:0000150 ... Q14565 33446654
    149162 7c9b:A (1.4) BS01 CA 3.4.13.21 GO:0005737 ... Q91642 34431561
    149163 7c9c:A (3.33) BS02 CA ? GO:0000150 ... Q14565 33446654
    149164 7c9c:B (3.33) BS03 CA ? GO:0000150 ... Q14565 33446654
    149165 7c9c:C (3.33) BS03 CA ? GO:0000150 ... Q14565 33446654
    149166 7c9k:A (2.75) BS01 CA 2.5.1.152 GO:0016740 ... A0A0H3JXA8 33826776
    149167 7c9q:A (1.878) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149168 7c9q:B (1.878) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149169 7c9q:C (1.878) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149170 7c9q:D (1.878) BS02 MG 3.1.3.11 GO:0000122 ... P09467 N/A
    149171 7c9r:1 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    149172 7c9r:3 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    149173 7c9r:5 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    149174 7c9r:7 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    149175 7c9r:9 (2.82) BS02 CA ? GO:0005886 ... G1BIZ0 33009385
    149176 7c9r:A (2.82) BS02 CA ? GO:0005886 ... G1BIY5 33009385
    149177 7c9r:C (2.82) BS05 MG ? GO:0005506 ... H8Z3S2 33009385
    149178 7c9r:C (2.82) BS06 CA ? GO:0005506 ... H8Z3S2 33009385
    149179 7c9r:D (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    149180 7c9r:F (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    149181 7c9r:I (2.82) BS02 CA ? GO:0005886 ... G1BIY5 33009385
    149182 7c9r:K (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    149183 7c9r:L (2.82) BS06 FE ? GO:0009772 ... G1BIY6 33009385
    149184 7c9r:M (2.82) BS03 FE ? GO:0009772 ... G1BIY7 33009385
    149185 7c9r:O (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    149186 7c9r:Q (2.82) BS02 CA ? GO:0005886 ... H8Z3S4 33009385
    149187 7c9r:S (2.82) BS02 CA ? GO:0005886 ... H8Z3R9 33009385
    149188 7c9r:U (2.82) BS02 CA ? GO:0005886 ... H8Z3R9 33009385
    149189 7c9r:W (2.82) BS02 CA ? GO:0005886 ... H8Z3R9 33009385
    149190 7c9r:Y (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    149191 7ca0:A (2.5) BS01 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149192 7ca0:A (2.5) BS02 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149193 7ca0:B (2.5) BS01 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149194 7ca0:B (2.5) BS02 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149195 7ca0:C (2.5) BS01 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149196 7ca0:C (2.5) BS02 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149197 7ca0:D (2.5) BS01 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149198 7ca0:D (2.5) BS02 ZN 3.5.2.3 GO:0004151 ... P20051 34630544
    149199 7ca1:A (3.6) BS01 ZN 3.5.2.3 GO:0004151 ... P20051 34202294
    149200 7ca1:A (3.6) BS02 ZN 3.5.2.3 GO:0004151 ... P20051 34202294

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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