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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    148601 7bih:A (3.0) BS01 MN ? GO:0000166 ... O27473 N/A
    148602 7bih:A (3.0) BS02 MN ? GO:0000166 ... O27473 N/A
    148603 7bih:B (3.0) BS01 MN ? GO:0000166 ... O27473 N/A
    148604 7bih:B (3.0) BS02 MN ? GO:0000166 ... O27473 N/A
    148605 7bip:B (1.6) BS01 CA ? GO:0004497 ... W8QPS6 33763824
    148606 7biq:A (1.2) BS03 CA ? GO:0000122 ... P31947 34076416
    148607 7biw:A (1.2) BS03 CA ? GO:0000122 ... P31947 34076416
    148608 7biz:A (1.53) BS02 CA ? N/A Q8A6C8 35227073
    148609 7biz:A (1.53) BS03 CA ? N/A Q8A6C8 35227073
    148610 7biz:B (1.53) BS02 CA ? N/A Q8A6C8 35227073
    148611 7biz:B (1.53) BS03 CA ? N/A Q8A6C8 35227073
    148612 7bj1:A (1.61) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    148613 7bj1:A (1.61) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    148614 7bj1:A (1.61) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    148615 7bj3:A (2.6) BS01 CA 3.4.21.110 GO:0004252 ... P58099 33897974
    148616 7bj8:A (1.69) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 34355567
    148617 7bj8:A (1.69) BS03 ZN 3.5.2.6 GO:0008270 ... P52700 34355567
    148618 7bj9:A (1.21001) BS01 ZN 3.5.2.6 GO:0008270 ... Q9RMI1 34355567
    148619 7bj9:B (1.21001) BS01 ZN 3.5.2.6 GO:0008270 ... Q9RMI1 34355567
    148620 7bjb:A (1.8) BS03 CA ? GO:0000122 ... P31947 34076416
    148621 7bjk:A (2.25) BS01 ZN 1.15.1.1 GO:0004784 ... Q9LU64 34276730
    148622 7bjk:B (2.25) BS01 ZN 1.15.1.1 GO:0004784 ... Q9LU64 34276730
    148623 7bjk:C (2.25) BS01 ZN 1.15.1.1 GO:0004784 ... Q9LU64 34276730
    148624 7bjk:D (2.25) BS01 ZN 1.15.1.1 GO:0004784 ... Q9LU64 34276730
    148625 7bjk:E (2.25) BS01 ZN 1.15.1.1 GO:0004784 ... Q9LU64 34276730
    148626 7bjq:A (2.7) BS03 MN ? GO:0000166 ... O27473 N/A
    148627 7bjq:A (2.7) BS04 MN ? GO:0000166 ... O27473 N/A
    148628 7bjq:B (2.7) BS02 MN ? GO:0000166 ... O27473 N/A
    148629 7bjq:B (2.7) BS03 MN ? GO:0000166 ... O27473 N/A
    148630 7bjt:A (1.42) BS01 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148631 7bjt:A (1.42) BS02 MG 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148632 7bjt:A (1.42) BS03 MG 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148633 7bjt:A (1.42) BS04 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148634 7bjt:B (1.42) BS01 MG 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148635 7bjt:B (1.42) BS02 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148636 7bjt:B (1.42) BS03 MG 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148637 7bjv:D (3.05) BS02 MG ? GO:0003677 ... O18473 33746550
    148638 7bjz:A (2.13) BS01 MN 5.3.1.5 GO:0000287 ... P24300 34162863
    148639 7bjz:A (2.13) BS02 MN 5.3.1.5 GO:0000287 ... P24300 34162863
    148640 7bjz:B (2.13) BS01 MN 5.3.1.5 GO:0000287 ... P24300 34162863
    148641 7bjz:B (2.13) BS02 MN 5.3.1.5 GO:0000287 ... P24300 34162863
    148642 7bk5:AAA (1.54) BS01 CU ? GO:0005507 ... C3JYL7 33896006
    148643 7bkb:G (3.5) BS01 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148644 7bkb:G (3.5) BS02 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148645 7bkb:g (3.5) BS01 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148646 7bkb:g (3.5) BS02 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148647 7bkc:G (3.0) BS01 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148648 7bkc:G (3.0) BS02 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148649 7bkc:g (3.0) BS01 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148650 7bkc:g (3.0) BS02 ZN 1.2.99.5 GO:0016491 ... Q2FRL9 34516836
    148651 7bkp:A (2.8) BS03 ZN 3.6.4.13 GO:0002376 ... Q8R5F7 34795277
    148652 7bkq:A (3.4) BS03 ZN 3.6.4.13 GO:0003677 ... Q8R5F7 34795277
    148653 7bkx:AAA (2.35) BS02 ZN ? GO:0046872 ... Q6SVB5 34958847
    148654 7bkx:AAA (2.35) BS03 ZN ? GO:0046872 ... Q6SVB5 34958847
    148655 7bkx:AAA (2.35) BS04 ZN ? GO:0046872 ... Q6SVB5 34958847
    148656 7bl1:DDD (9.8) BS02 MG 3.6.5.2 GO:0003924 ... P20339 33692360
    148657 7bl2:b (3.7) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    148658 7bl4:d (2.4) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    148659 7bl4:g (2.4) BS02 ZN ? GO:0002181 ... P0A7Q6 33639093
    148660 7bl5:9 (3.3) BS03 MG 3.6.5.- GO:0000027 ... P42641 33639093
    148661 7bl5:b (3.3) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    148662 7bl6:9 (4.0) BS02 MG 3.6.5.- GO:0000027 ... P42641 33639093
    148663 7bl6:d (4.0) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    148664 7bl6:g (4.0) BS02 ZN ? GO:0002181 ... P0A7Q6 33639093
    148665 7blg:A (1.18) BS02 CA ? N/A Q8A3D9 N/A
    148666 7blh:AAAA (1.79) BS02 CA ? N/A Q8A3D9 N/A
    148667 7blj:A (1.76) BS02 CA ? N/A Q8A3D9 N/A
    148668 7blk:A (1.06) BS01 CA ? N/A Q8A3D9 N/A
    148669 7blv:A (2.099) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... P14336 35987382
    148670 7blx:B (3.15) BS48 CA 1.97.1.12 GO:0000287 ... P09144 N/A
    148671 7bly:A (1.81) BS01 ZN 3.5.1.41 GO:0005975 ... A2QZC8 34478709
    148672 7blz:B (3.1) BS48 CA 1.97.1.12 GO:0000287 ... Q85FY6 N/A
    148673 7blz:B (3.1) BS49 CA 1.97.1.12 GO:0000287 ... Q85FY6 N/A
    148674 7bm4:A (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    148675 7bm4:B (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    148676 7bm6:A (2.16) BS03 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148677 7bm6:A (2.16) BS04 MG 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148678 7bm6:B (2.16) BS03 MG 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148679 7bm6:B (2.16) BS04 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    148680 7bm8:A (2.73) BS02 MG ? GO:0003677 ... B8GW30 34397383
    148681 7bm8:B (2.73) BS03 MG ? GO:0003677 ... B8GW30 34397383
    148682 7bm9:A (1.8) BS02 MG ? GO:0000122 ... P31947 36255265
    148683 7bmc:A (2.0) BS03 MG ? GO:0000122 ... P31947 36255265
    148684 7bmf:A (2.2) BS01 MN ? GO:0000166 ... O27473 N/A
    148685 7bmf:A (2.2) BS02 MN ? GO:0000166 ... O27473 N/A
    148686 7bmf:B (2.2) BS01 MN ? GO:0000166 ... O27473 N/A
    148687 7bmf:B (2.2) BS02 MN ? GO:0000166 ... O27473 N/A
    148688 7bmi:A (1.66) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 N/A
    148689 7bmj:A (1.75) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 N/A
    148690 7bmj:C (1.75) BS01 MN 1.14.11.16 GO:0018193 ... Q12797 N/A
    148691 7bmp:A (1.9) BS05 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    148692 7bmp:A (1.9) BS06 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    148693 7bmq:A (1.79) BS01 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    148694 7bmq:A (1.79) BS02 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    148695 7bmq:A (1.79) BS03 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    148696 7bmu:A (1.9) BS02 CS ? GO:0000439 ... G0RZ08 34426585
    148697 7bmv:A (1.9) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    148698 7bmw:A (1.9) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    148699 7bmw:A (1.9) BS02 CS ? GO:0000439 ... G0RZ08 34426585
    148700 7bmx:A (1.9) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    148701 7bmx:A (1.9) BS02 CS ? GO:0000439 ... G0RZ08 34426585
    148702 7bmy:A (1.8) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    148703 7bnk:A (1.9) BS03 MG ? GO:0003677 ... Q1CVJ4 34562373
    148704 7bnk:B (1.9) BS04 MG ? GO:0003677 ... Q1CVJ4 34562373
    148705 7bnr:A (1.7) BS02 MG ? GO:0003677 ... Q1CVJ4 34562373
    148706 7bnr:B (1.7) BS03 MG ? GO:0003677 ... Q1CVJ4 34562373
    148707 7boe:B (2.9) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    148708 7boh:B (2.82) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    148709 7boi:W (2.98) BS02 ZN 3.6.1.- GO:0000028 ... P39286 34088665
    148710 7boi:W (2.98) BS04 MG 3.6.1.- GO:0000028 ... P39286 34088665
    148711 7boi:W (2.98) BS05 MG 3.6.1.- GO:0000028 ... P39286 34088665
    148712 7bop:A (1.9) BS01 MN ? GO:0000030 ... B0Y2F5 32873705
    148713 7bop:B (1.9) BS01 MN ? GO:0000030 ... B0Y2F5 32873705
    148714 7bop:C (1.9) BS01 MN ? GO:0000030 ... B0Y2F5 32873705
    148715 7bop:D (1.9) BS01 MN ? GO:0000030 ... B0Y2F5 32873705
    148716 7bop:E (1.9) BS01 MN ? GO:0000030 ... B0Y2F5 32873705
    148717 7bop:F (1.9) BS01 MN ? GO:0000030 ... B0Y2F5 32873705
    148718 7bos:A (1.7) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 34458803
    148719 7bot:A (1.7) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 34458803
    148720 7bp1:C (1.97) BS02 ZN ? GO:0005737 ... N1S495 32421914
    148721 7bpc:A (2.45) BS02 ZN ? GO:0005737 ... N1S495 32421914
    148722 7bph:A (1.57) BS03 MG ? GO:0002862 ... P63092 36170854
    148723 7bpi:A (2.40009) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 33354505
    148724 7bpi:B (2.40009) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 33354505
    148725 7bpi:B (2.40009) BS02 MG 3.1.4.17 GO:0004114 ... Q9Y233 33354505
    148726 7bq7:B (2.37) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    148727 7bq7:B (2.37) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    148728 7bqu:A (1.9) BS03 ZN ? N/A Q96SW2 32929090
    148729 7bqv:A (1.8) BS03 ZN ? N/A Q96SW2 32929090
    148730 7br4:A (1.95) BS01 MN ? GO:0000166 ... Q9WZL1 32853774
    148731 7bre:B (2.803) BS02 ZN 2.1.1.364 N/A Q9UMN6 32697937
    148732 7bre:E (2.803) BS02 ZN 2.1.1.364 N/A Q9UMN6 32697937
    148733 7brs:A (2.67) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148734 7brs:A (2.67) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148735 7brs:B (2.67) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148736 7brs:B (2.67) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148737 7brs:C (2.67) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148738 7brs:C (2.67) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148739 7brs:D (2.67) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148740 7brs:D (2.67) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148741 7brv:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148742 7brw:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148743 7brx:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148744 7bry:A (1.65) BS02 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148745 7brz:A (1.3) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148746 7bs0:A (1.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148747 7bs1:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148748 7bs2:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148749 7bs3:A (1.28) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148750 7bs4:A (1.04) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148751 7bs5:A (1.17) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148752 7bs6:A (1.04) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148753 7bs7:A (1.04) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148754 7bs8:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148755 7bs9:A (1.05) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148756 7bsa:A (1.22) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    148757 7bsj:A (2.48) BS02 MG 1.1.1.38 GO:0004470 ... P23368 33554057
    148758 7bsj:B (2.48) BS02 MG 1.1.1.38 GO:0004470 ... P23368 33554057
    148759 7bsq:A (3.2) BS03 MG 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    148760 7bss:A (3.3) BS02 MG 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    148761 7bsu:A (3.2) BS01 MG 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    148762 7bsv:A (3.0) BS02 MG 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    148763 7bt6:b (3.12) BS03 MG ? GO:0000054 ... Q02892 33037216
    148764 7bt6:j (3.12) BS03 ZN ? GO:0000448 ... P49166 33037216
    148765 7bt6:p (3.12) BS02 ZN ? GO:0002181 ... P0CX25 33037216
    148766 7bt7:E (3.8) BS01 MG 3.6.4.- GO:0001725 ... P68139 32567727
    148767 7btb:b (3.22) BS03 MG ? GO:0000054 ... Q02892 33037216
    148768 7btb:j (3.22) BS03 ZN ? GO:0000448 ... P49166 33037216
    148769 7btb:m (3.22) BS03 MG ? GO:0000055 ... P53742 33037216
    148770 7btb:p (3.22) BS02 ZN ? GO:0002181 ... P0CX25 33037216
    148771 7btd:A (2.0) BS01 MG 3.6.5.- GO:0000139 ... Q15382 32470140
    148772 7bte:I (4.2) BS02 MG 3.6.4.- GO:0001725 ... P68139 32567727
    148773 7btf:A (2.95) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32277040
    148774 7btk:A (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148775 7btk:A (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148776 7btk:B (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148777 7btk:C (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148778 7btk:C (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148779 7btk:D (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148780 7btk:D (2.7) BS03 MG 3.2.1.23 GO:0000287 ... P00722 33624914
    148781 7btn:A (2.382) BS01 MG 3.6.1.1 GO:0000287 ... Q15181 33036755
    148782 7btn:A (2.382) BS02 MG 3.6.1.1 GO:0000287 ... Q15181 33036755
    148783 7btv:A (2.0) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148784 7btv:A (2.0) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148785 7btv:A (2.0) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148786 7btv:A (2.0) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148787 7btv:B (2.0) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148788 7btv:B (2.0) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148789 7btv:B (2.0) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148790 7btv:B (2.0) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148791 7bu2:A (1.553) BS01 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148792 7bu2:A (1.553) BS02 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148793 7bu2:B (1.553) BS01 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148794 7bu2:B (1.553) BS02 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148795 7bu3:A (2.0) BS03 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148796 7bu3:A (2.0) BS04 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148797 7bu3:B (2.0) BS02 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148798 7bu3:B (2.0) BS03 ZN 1.1.1.2 GO:0006631 ... P27250 32455802
    148799 7buc:A (2.6) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218
    148800 7buc:A (2.6) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 32781218

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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