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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    148001 7auj:A (2.1) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    148002 7aul:A (1.85) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    148003 7aun:A (1.95) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    148004 7aup:A (1.85) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    148005 7auq:A (2.25) BS02 CA 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    148006 7aus:A (1.75) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    148007 7auu:A (2.45) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0016462 ... Q99321 33893105
    148008 7auw:A (2.8) BS04 ZN 3.4.24.63 GO:0004222 ... Q16820 33782129
    148009 7auw:C (2.8) BS04 ZN 3.4.24.63 GO:0004222 ... Q16820 33782129
    148010 7auz:A (1.9) BS01 ZN 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 33592148
    148011 7av0:A (1.9) BS01 ZN 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 33592148
    148012 7av1:A (1.79) BS01 ZN 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 33592148
    148013 7av2:A (1.95) BS01 ZN 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 33592148
    148014 7av7:A (2.9) BS01 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148015 7av7:A (2.9) BS02 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148016 7av7:B (2.9) BS01 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148017 7av7:B (2.9) BS02 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148018 7av7:C (2.9) BS01 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148019 7av7:C (2.9) BS02 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148020 7av7:D (2.9) BS01 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148021 7av7:D (2.9) BS02 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148022 7av7:E (2.9) BS01 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148023 7av7:E (2.9) BS02 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148024 7av7:F (2.9) BS01 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148025 7av7:F (2.9) BS02 ZN 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    148026 7avw:B (2.1) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    148027 7avw:B (2.1) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    148028 7avw:B (2.1) BS03 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    148029 7avw:B (2.1) BS04 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    148030 7awt:G (2.73) BS05 MG 7.1.1.- GO:0003954 ... P33602 34562374
    148031 7awt:G (2.73) BS06 MG 7.1.1.- GO:0003954 ... P33602 34562374
    148032 7ax1:B (3.3) BS01 MG 3.1.13.4 GO:0000175 ... Q9UIV1 34038562
    148033 7ax3:B (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148034 7ax3:B2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148035 7ax3:D (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148036 7ax3:D2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148037 7ax3:E2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148038 7ax3:F (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148039 7ax3:G2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148040 7ax3:H (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148041 7ax3:H2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148042 7ax3:I2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148043 7ax3:J (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148044 7ax3:J2 (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148045 7ax3:M (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148046 7ax3:O (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148047 7ax3:Q (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148048 7ax3:S (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148049 7ax3:U (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148050 7ax3:W (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148051 7ax3:Y (3.74) BS01 MG 3.6.5.5 GO:0001917 ... Q05193 34518553
    148052 7ax4:A (2.12) BS02 CA 2.7.10.2 GO:0004672 ... P29597 33783261
    148053 7ax4:B (2.12) BS02 CA 2.7.10.2 GO:0004672 ... P29597 33783261
    148054 7ax7:A (2.05) BS01 CO 3.2.1.8 GO:0005975 ... A0A140HJ20 35657930
    148055 7axn:A (1.4) BS03 CA ? GO:0000122 ... P31947 34047554
    148056 7ay0:B (3.6) BS01 ZN 3.4.19.12 GO:0004197 ... O94782 33795880
    148057 7ay0:D (3.6) BS01 ZN 3.4.19.12 GO:0004197 ... O94782 33795880
    148058 7ay1:D (3.7) BS01 ZN 3.4.19.12 GO:0001501 ... O94782 33795880
    148059 7ay2:B (3.2) BS01 ZN 3.4.19.12 GO:0004197 ... O94782 33795880
    148060 7ay2:E (3.2) BS01 ZN 3.4.19.12 GO:0004197 ... O94782 33795880
    148061 7ay3:A (2.00002) BS01 CA 3.2.1.8 GO:0030246 ... A0A140HJ20 35657930
    148062 7ay3:A (2.00002) BS02 CA 3.2.1.8 GO:0030246 ... A0A140HJ20 35657930
    148063 7ay6:A (1.66) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 34171658
    148064 7ay6:A (1.66) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 34171658
    148065 7ay6:B (1.66) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 34171658
    148066 7ayf:A (1.752) BS03 CA ? GO:0000122 ... P31947 34047554
    148067 7ayg:A (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148068 7ayg:B (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148069 7ayg:C (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148070 7ayg:D (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148071 7ayg:E (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148072 7ayg:F (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148073 7ayg:G (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148074 7ayg:H (1.9) BS03 MG 4.1.1.8 GO:0000166 ... C5AX46 34484855
    148075 7ayj:A (1.21) BS01 ZN 3.5.2.6 GO:0016787 ... Q9XAY4 34003651
    148076 7ayj:A (1.21) BS02 ZN 3.5.2.6 GO:0016787 ... Q9XAY4 34003651
    148077 7ays:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 33399553
    148078 7az1:A (1.15) BS03 CA ? GO:0000122 ... P31947 34047554
    148079 7az1:A (1.15) BS04 CA ? GO:0000122 ... P31947 34047554
    148080 7az2:A (1.081) BS03 CA ? GO:0000122 ... P31947 34047554
    148081 7azo:L30A (3.3) BS03 MG ? GO:0003735 ... Q5SHQ6 36827973
    148082 7azo:L5A (3.3) BS04 MG ? GO:0000049 ... Q5SHQ0 36827973
    148083 7azq:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... O30970 N/A
    148084 7azq:E (2.0) BS01 FE 1.15.1.1 GO:0004784 ... O30970 N/A
    148085 7azr:A (2.1) BS01 MN 1.15.1.1 GO:0004784 ... O30970 N/A
    148086 7azr:E (2.1) BS01 MN 1.15.1.1 GO:0004784 ... O30970 N/A
    148087 7azs:L23A (3.1) BS02 MG ? GO:0000027 ... Q5SHP0 36827973
    148088 7azs:L30A (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 36827973
    148089 7azs:L5A (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 36827973
    148090 7b04:C (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148091 7b04:C (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148092 7b04:F (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148093 7b04:F (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148094 7b04:I (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148095 7b04:I (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148096 7b04:L (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148097 7b04:L (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148098 7b04:O (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148099 7b04:O (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148100 7b04:R (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148101 7b04:R (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148102 7b04:U (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148103 7b04:U (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148104 7b04:X (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    148105 7b04:X (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    148106 7b05:A (3.8) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148107 7b05:B (3.8) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148108 7b05:C (3.8) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148109 7b05:D (3.8) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    148110 7b07:A (3.099) BS01 CA 2.7.7.7 GO:0000166 ... P56689 33302546
    148111 7b07:A (3.099) BS02 CA 2.7.7.7 GO:0000166 ... P56689 33302546
    148112 7b0e:A (1.4) BS02 CA ? GO:0000166 ... Q9A5E6 N/A
    148113 7b0e:A (1.4) BS03 CA ? GO:0000166 ... Q9A5E6 N/A
    148114 7b0h:E (3.15) BS03 MN 2.7.7.7 GO:0000166 ... P56689 33302546
    148115 7b0h:E (3.15) BS04 MN 2.7.7.7 GO:0000166 ... P56689 33302546
    148116 7b0h:E (3.15) BS05 MG 2.7.7.7 GO:0000166 ... P56689 33302546
    148117 7b0h:F (3.15) BS05 MN 2.7.7.7 GO:0000166 ... P56689 33302546
    148118 7b0h:F (3.15) BS06 MN 2.7.7.7 GO:0000166 ... P56689 33302546
    148119 7b0h:F (3.15) BS07 MG 2.7.7.7 GO:0000166 ... P56689 33302546
    148120 7b0i:D (3.0) BS02 ZN ? GO:0000398 ... Q7RTV0 34301950
    148121 7b0i:D (3.0) BS03 ZN ? GO:0000398 ... Q7RTV0 34301950
    148122 7b0i:D (3.0) BS04 ZN ? GO:0000398 ... Q7RTV0 34301950
    148123 7b0j:A (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    148124 7b0j:B (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    148125 7b0j:C (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    148126 7b0j:D (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    148127 7b0n:R (3.7) BS01 ZN ? N/A A0A1H6Q8Z5 33640456
    148128 7b0s:A (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148129 7b0s:B (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148130 7b0s:C (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148131 7b0s:D (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    148132 7b0y:A (3.6) BS04 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    148133 7b0y:A (3.6) BS05 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    148134 7b0y:A (3.6) BS06 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    148135 7b0y:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    148136 7b0y:C (3.6) BS01 ZN ? GO:0000428 ... I3LCH3 33446560
    148137 7b0y:I (3.6) BS01 ZN ? GO:0000428 ... P60899 33446560
    148138 7b0y:I (3.6) BS02 ZN ? GO:0000428 ... P60899 33446560
    148139 7b0y:J (3.6) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33446560
    148140 7b0y:L (3.6) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33446560
    148141 7b13:A (1.37) BS02 MG ? GO:0000122 ... P31947 N/A
    148142 7b15:A (1.59) BS02 MG ? GO:0000122 ... P31947 N/A
    148143 7b16:A (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148144 7b16:B (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148145 7b16:C (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148146 7b16:D (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148147 7b19:A (2.55) BS02 MG ? GO:0003774 ... P08799 33374308
    148148 7b1a:A (2.6) BS01 MG ? GO:0003774 ... P08799 33374308
    148149 7b1g:A (3.6) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    148150 7b1g:B (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    148151 7b1g:C (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    148152 7b1g:D (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    148153 7b1k:A (2.2) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    148154 7b1k:A (2.2) BS03 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    148155 7b1k:B (2.2) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    148156 7b1k:B (2.2) BS03 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    148157 7b1l:A (1.85) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    148158 7b1l:A (1.85) BS05 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    148159 7b1l:B (1.85) BS01 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    148160 7b1l:B (1.85) BS03 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    148161 7b1n:A (2.8) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    148162 7b1n:B (2.8) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    148163 7b1s:A (0.992) BS02 MN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    148164 7b1s:D (0.992) BS02 MN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    148165 7b1v:A (2.04) BS01 CO ? GO:0003677 ... N/A 34417623
    148166 7b1v:A (2.04) BS02 CO ? GO:0003677 ... N/A 34417623
    148167 7b1v:B (2.04) BS01 CO ? GO:0003677 ... N/A 34417623
    148168 7b1v:B (2.04) BS02 CO ? GO:0003677 ... N/A 34417623
    148169 7b1w:A (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148170 7b1w:B (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148171 7b1w:C (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148172 7b1w:D (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148173 7b1w:E (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148174 7b1w:F (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148175 7b1w:G (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148176 7b1w:H (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148177 7b1w:I (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148178 7b1w:J (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148179 7b1w:K (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148180 7b1w:L (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    148181 7b1y:A (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    148182 7b1y:A (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    148183 7b1y:B (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    148184 7b1y:B (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    148185 7b1y:C (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    148186 7b1y:C (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    148187 7b1y:D (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    148188 7b1y:D (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    148189 7b1y:aa (2.12) BS01 CO ? GO:0003677 ... N/A 34417623
    148190 7b1y:dd (2.12) BS01 CO ? GO:0003677 ... N/A 34417623
    148191 7b20:A (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    148192 7b20:A (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    148193 7b20:B (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    148194 7b20:B (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    148195 7b20:C (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    148196 7b20:C (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    148197 7b20:D (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    148198 7b20:D (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    148199 7b20:aa (2.18) BS01 FE2 ? GO:0003677 ... N/A 34417623
    148200 7b20:dd (2.18) BS01 FE2 ? GO:0003677 ... N/A 34417623
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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