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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    147801 7aor:at (3.5) BS02 ZN ? N/A Q4E1X5 33168716
    147802 7aor:at (3.5) BS03 ZN ? N/A Q4E1X5 33168716
    147803 7aor:y (3.5) BS01 ZN ? GO:0004784 ... Q4CSF0 33168716
    147804 7aov:A (2.00002) BS01 ZN ? N/A A0A0R4IMY7 35634784
    147805 7aov:B (2.00002) BS01 ZN ? N/A A0A0R4IMY7 35634784
    147806 7aoz:A (2.85) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147807 7aoz:A (2.85) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147808 7aoz:A (2.85) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147809 7aoz:B (2.85) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    147810 7aoz:I (2.85) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    147811 7ap1:A (2.18) BS02 CA 6.1.1.11 GO:0000166 ... A6T6Z0 33081246
    147812 7ap1:A (2.18) BS03 CA 6.1.1.11 GO:0000166 ... A6T6Z0 33081246
    147813 7ap2:A (2.25) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33081246
    147814 7ap8:A (3.15) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147815 7ap8:A (3.15) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147816 7ap8:A (3.15) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147817 7ap8:B (3.15) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    147818 7ap8:I (3.15) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    147819 7ap9:A (3.01) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147820 7ap9:A (3.01) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147821 7ap9:A (3.01) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147822 7ap9:B (3.01) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    147823 7ap9:I (3.01) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    147824 7apl:A (1.99) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 34387025
    147825 7apm:A (1.66) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 34387025
    147826 7apn:A (2.0) BS01 MG 3.1.1.3 GO:0004806 ... O59952 34602865
    147827 7apn:B (2.0) BS01 MG 3.1.1.3 GO:0004806 ... O59952 34602865
    147828 7apv:A (1.95) BS02 ZN 3.1.-.- N/A Q96SD1 34387696
    147829 7apy:A (1.778) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    147830 7apy:B (1.778) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    147831 7apz:A (1.97) BS01 ZN ? GO:0006955 ... Q4U5Z6 N/A
    147832 7aq0:A (1.584) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    147833 7aq0:B (1.584) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    147834 7aq1:A (2.413) BS04 ZN 3.4.24.63 GO:0004222 ... Q16820 34073350
    147835 7aq1:A (2.413) BS06 CA 3.4.24.63 GO:0004222 ... Q16820 34073350
    147836 7aq1:A (2.413) BS07 CA 3.4.24.63 GO:0004222 ... Q16820 34073350
    147837 7aq1:B (2.413) BS03 ZN 3.4.24.63 GO:0004222 ... Q16820 34073350
    147838 7aq1:B (2.413) BS05 CA 3.4.24.63 GO:0004222 ... Q16820 34073350
    147839 7aq1:B (2.413) BS06 CA 3.4.24.63 GO:0004222 ... Q16820 34073350
    147840 7aq2:A (1.683) BS01 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147841 7aq2:A (1.683) BS02 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147842 7aq2:B (1.683) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147843 7aq3:A (1.639) BS02 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147844 7aq3:A (1.639) BS03 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147845 7aq3:B (1.639) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147846 7aq4:A (1.708) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147847 7aq4:A (1.708) BS03 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147848 7aq4:A (1.708) BS04 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147849 7aq4:B (1.708) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147850 7aq5:A (1.7) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147851 7aq5:A (1.7) BS03 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147852 7aq5:A (1.7) BS04 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147853 7aq5:B (1.7) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147854 7aq6:A (1.514) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147855 7aq6:B (1.514) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147856 7aq7:A (1.608) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147857 7aq7:B (1.608) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147858 7aq8:A (1.791) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147859 7aq8:A (1.791) BS03 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147860 7aq8:A (1.791) BS04 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147861 7aq8:B (1.791) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147862 7aq9:A (1.585) BS02 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147863 7aq9:A (1.585) BS03 ZN 1.7.2.4 GO:0005507 ... P19573 33377777
    147864 7aq9:B (1.585) BS01 CA 1.7.2.4 GO:0005507 ... P19573 33377777
    147865 7aqa:A (1.497) BS02 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    147866 7aqa:B (1.497) BS02 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    147867 7aqb:A (2.25) BS01 MG 2.7.11.24 GO:0004672 ... Q16659 33114754
    147868 7aqm:A (2.5) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... H3BCW1 34321462
    147869 7aqm:A (2.5) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... H3BCW1 34321462
    147870 7aqm:B (2.5) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... H3BCW1 34321462
    147871 7aqm:B (2.5) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... H3BCW1 34321462
    147872 7aqp:A (2.6) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    147873 7aqp:A (2.6) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147874 7aqp:A (2.6) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147875 7aqp:A (2.6) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147876 7aqp:A (2.6) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147877 7aqq:O (3.06) BS02 FE ? GO:0005515 ... Q9SRR8 33768254
    147878 7aqq:y (3.06) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    147879 7aqr:R (2.91) BS01 ZN ? GO:0005739 ... Q9M9M6 33768254
    147880 7aqs:A (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147881 7aqs:A (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147882 7aqs:B (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147883 7aqs:B (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147884 7aqs:C (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147885 7aqs:C (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147886 7aqs:D (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147887 7aqs:D (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147888 7aqs:E (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147889 7aqs:F (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147890 7aqs:F (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147891 7aqs:G (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147892 7aqs:G (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147893 7aqs:H (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147894 7aqs:H (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147895 7aqs:I (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147896 7aqs:J (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147897 7aqs:K (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147898 7aqs:K (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147899 7aqs:L (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147900 7aqs:L (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147901 7aqs:M (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147902 7aqs:M (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147903 7aqs:N (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147904 7aqs:O (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147905 7aqs:O (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147906 7aqs:P (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147907 7aqs:P (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147908 7aqs:Q (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147909 7aqs:R (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147910 7aqs:R (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147911 7aqs:S (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147912 7aqs:S (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147913 7aqs:T (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147914 7aqs:T (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147915 7aqs:U (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147916 7aqs:U (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147917 7aqs:V (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147918 7aqs:V (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147919 7aqs:W (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147920 7aqs:W (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147921 7aqs:X (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147922 7aqs:X (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    147923 7ar7:R (3.72) BS01 ZN ? N/A Q9M9M6 33768254
    147924 7ar7:y (3.72) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    147925 7ar8:O (3.53) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    147926 7ar8:R (3.53) BS01 ZN ? GO:0005739 ... Q9M9M6 33768254
    147927 7ar8:y (3.53) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    147928 7ara:A (2.243) BS02 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... P04936 34315103
    147929 7ara:B (2.243) BS02 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0006508 ... P04936 34315103
    147930 7arb:O (3.41) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    147931 7arb:R (3.41) BS01 ZN ? GO:0005739 ... Q9M9M6 33768254
    147932 7arb:y (3.41) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    147933 7arc:R (2.88) BS02 ZN N/A N/A N/A 33768254
    147934 7ard:R (3.11) BS02 ZN N/A N/A N/A 33768254
    147935 7arj:D (3.2) BS02 MG 7.6.2.- GO:0005524 ... P75957 33782615
    147936 7arj:F (3.2) BS02 MG 7.6.2.- GO:0005524 ... P75957 33782615
    147937 7ark:F (4.1) BS03 MG 7.6.2.- GO:0005524 ... P75957 33782615
    147938 7aru:A (2.05) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    147939 7aru:A (2.05) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147940 7aru:A (2.05) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147941 7aru:A (2.05) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147942 7aru:A (2.05) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147943 7aru:A (2.05) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    147944 7arw:A (1.31) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147945 7arw:A (1.31) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147946 7arw:B (1.31) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147947 7arw:B (1.31) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147948 7ase:5 (3.33) BS02 MG 3.6.5.3 GO:0000049 ... Q4CPV7 33357443
    147949 7asj:A (1.43) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34958217
    147950 7ask:F (4.3) BS01 MG ? GO:0003676 ... Q4E5Z1 33357443
    147951 7at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2271529
    147952 7at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2271529
    147953 7at8:A (4.4) BS01 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147954 7at8:A (4.4) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147955 7at8:A (4.4) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147956 7at8:A (4.4) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147957 7at8:A (4.4) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147958 7at8:A (4.4) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147959 7at8:A (4.4) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    147960 7ate:A (2.4) BS01 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    147961 7ate:A (2.4) BS04 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    147962 7ate:A (2.4) BS05 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    147963 7ath:AAA (2.343) BS01 ZN N/A N/A N/A 34556817
    147964 7atj:A (1.47) BS01 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    147965 7atj:A (1.47) BS02 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    147966 7atk:AAA (2.855) BS01 ZN N/A N/A N/A 34556817
    147967 7atk:AAA (2.855) BS02 ZN N/A N/A N/A 34556817
    147968 7atn:A (2.66) BS01 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    147969 7atn:A (2.66) BS03 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    147970 7atn:A (2.66) BS04 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    147971 7atp:A (2.1) BS01 CA ? GO:0008289 ... Q9SKR2 34408000
    147972 7atp:A (2.1) BS02 CA ? GO:0008289 ... Q9SKR2 34408000
    147973 7au3:A (2.56) BS01 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    147974 7au3:A (2.56) BS04 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    147975 7au3:A (2.56) BS05 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    147976 7au5:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 34159741
    147977 7au5:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 34159741
    147978 7au5:F (2.2) BS02 MG N/A GO:0036211 ... N/A 34159741
    147979 7au6:A (2.4) BS03 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    147980 7au6:A (2.4) BS04 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    147981 7au6:A (2.4) BS10 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    147982 7auc:A (1.53) BS02 MG 5.6.2.4 GO:0000166 ... P54132 33647232
    147983 7auc:A (1.53) BS03 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147984 7auc:A (1.53) BS04 CA 5.6.2.4 GO:0000166 ... P54132 33647232
    147985 7aud:A (2.96) BS04 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147986 7aud:B (2.96) BS02 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147987 7aud:C (2.96) BS02 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147988 7aud:D (2.96) BS02 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147989 7aud:E (2.96) BS03 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147990 7aud:F (2.96) BS02 ZN 5.6.2.4 GO:0000166 ... P54132 33647232
    147991 7aue:R (2.97) BS02 CA ? GO:0002024 ... P32245 33858992
    147992 7auf:A (1.76) BS01 ZN ? GO:0046872 ... Q1Q2X6 34310758
    147993 7aug:A (2.04) BS01 CA ? GO:0000086 ... P0DP23 34845372
    147994 7aug:A (2.04) BS02 CA ? GO:0000086 ... P0DP23 34845372
    147995 7aug:A (2.04) BS03 CA ? GO:0000086 ... P0DP23 34845372
    147996 7aug:A (2.04) BS04 CA ? GO:0000086 ... P0DP23 34845372
    147997 7aug:A (2.04) BS05 CA ? GO:0000086 ... P0DP23 34845372
    147998 7aug:A (2.04) BS06 CA ? GO:0000086 ... P0DP23 34845372
    147999 7aug:A (2.04) BS07 CA ? GO:0000086 ... P0DP23 34845372
    148000 7aug:A (2.04) BS08 CA ? GO:0000086 ... P0DP23 34845372

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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