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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    147601 7aik:A (2.1) BS02 FE2 1.17.4.1 GO:0009263 ... O67475 34941255
    147602 7ail:A (1.73) BS01 FE2 1.17.4.1 GO:0009263 ... O67475 34941255
    147603 7aip:A (3.12) BS02 MG ? GO:0005515 ... Q9UP95 34031912
    147604 7aip:B (3.12) BS02 MG ? GO:0005515 ... Q9UP95 34031912
    147605 7aj0:A (2.5) BS01 CA N/A N/A N/A 34593864
    147606 7aj0:B (2.5) BS01 CA N/A N/A N/A 34593864
    147607 7aj0:C (2.5) BS01 CA N/A N/A N/A 34593864
    147608 7aj0:D (2.5) BS01 CA N/A N/A N/A 34593864
    147609 7aj0:E (2.5) BS01 CA N/A N/A N/A 34593864
    147610 7aj0:F (2.5) BS01 CA N/A N/A N/A 34593864
    147611 7ajk:BBB (3.1) BS01 MG 3.6.5.2 GO:0001764 ... P63000 33217330
    147612 7ajr:AAA (1.75) BS02 ZN 3.4.24.- GO:0004222 ... E3ULB4 33603968
    147613 7ajt:CL (4.6) BS05 MG ? GO:0000462 ... Q08965 33326748
    147614 7ajt:Db (4.6) BS02 ZN ? GO:0000028 ... P35997 33326748
    147615 7ajt:UX (4.6) BS03 ZN ? GO:0000447 ... Q05498 33326748
    147616 7aju:Db (3.8) BS02 ZN ? GO:0000028 ... P35997 33326748
    147617 7aju:UX (3.8) BS02 ZN ? GO:0000447 ... Q05498 33326748
    147618 7ak1:A (2.507) BS02 MG 3.4.22.- GO:0004197 ... Q9UDY8 33252239
    147619 7ak5:R (3.17) BS01 ZN ? GO:0001822 ... P52503 33514727
    147620 7ak6:R (3.82) BS01 ZN ? GO:0001822 ... P52503 33514727
    147621 7akk:D (3.395) BS01 MG ? N/A P11215 N/A
    147622 7akk:H (3.395) BS01 MG ? N/A P11215 N/A
    147623 7akm:A (1.93) BS02 MG 2.7.11.1 GO:0000077 ... O14757 33789090
    147624 7akn:A (2.46) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    147625 7akn:A (2.46) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    147626 7akn:A (2.46) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    147627 7akn:A (2.46) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    147628 7akn:A (2.46) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    147629 7akq:A (2.32) BS01 ZN 3.2.1.14 GO:0005975 ... P48827 N/A
    147630 7akq:A (2.32) BS02 ZN 3.2.1.14 GO:0005975 ... P48827 N/A
    147631 7akr:AAA (1.95) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147632 7akr:AAA (1.95) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147633 7akr:BBB (1.95) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147634 7akr:BBB (1.95) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147635 7akr:CCC (1.95) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147636 7akr:CCC (1.95) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147637 7akr:DDD (1.95) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147638 7akr:DDD (1.95) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147639 7aks:AAA (1.86) BS03 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147640 7aks:AAA (1.86) BS04 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147641 7aks:CCC (1.86) BS03 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147642 7aks:CCC (1.86) BS04 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147643 7aks:CCC (1.86) BS05 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147644 7aks:EEE (1.86) BS03 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147645 7aks:EEE (1.86) BS04 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147646 7aks:GGG (1.86) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147647 7aks:GGG (1.86) BS03 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 34321462
    147648 7al8:E (2.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    147649 7al8:H (2.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    147650 7al8:Q (2.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    147651 7al8:T (2.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    147652 7ala:A (1.846) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147653 7ala:B (1.846) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147654 7ala:C (1.846) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147655 7ala:D (1.846) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147656 7ala:E (1.846) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147657 7alb:A (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147658 7alb:B (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147659 7alb:C (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147660 7alb:D (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147661 7alb:E (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147662 7alb:F (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147663 7alb:G (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147664 7alb:H (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147665 7alb:I (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147666 7alb:J (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147667 7alb:K (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147668 7alb:L (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147669 7alb:M (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147670 7alb:N (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147671 7alb:O (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147672 7alb:P (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147673 7alb:Q (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147674 7alb:R (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147675 7alb:S (1.979) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147676 7alb:T (1.979) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147677 7alc:A (1.726) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147678 7alc:B (1.726) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147679 7alc:C (1.726) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147680 7alc:D (1.726) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147681 7alc:E (1.726) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    147682 7alj:A (1.52) BS03 CA ? GO:0005509 ... P07207 34347930
    147683 7alj:A (1.52) BS04 CA ? GO:0005509 ... P07207 34347930
    147684 7all:AAA (1.63) BS02 CA ? GO:0004065 ... Q89YP8 34616040
    147685 7alp:U (3.4) BS01 MG 2.7.7.48
    3.1.-.-
    GO:0001172 ... I0DF35 33927385
    147686 7alq:A (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147687 7alq:B (2.205) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147688 7alq:C (2.205) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147689 7alq:D (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147690 7alq:E (2.205) BS03 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147691 7alq:F (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147692 7alq:G (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147693 7alq:H (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147694 7alq:I (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147695 7alq:J (2.205) BS04 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147696 7alq:K (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147697 7alq:L (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147698 7alq:M (2.205) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147699 7alq:N (2.205) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147700 7alq:O (2.205) BS03 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147701 7alq:P (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147702 7alq:Q (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147703 7alq:R (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147704 7alq:S (2.205) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147705 7alq:T (2.205) BS03 ZN 3.5.4.16 GO:0003934 ... P30793 33387654
    147706 7alt:A (2.03) BS01 CA ? GO:0007154 ... P18168 34347930
    147707 7alt:B (2.03) BS01 CA ? GO:0007154 ... P18168 34347930
    147708 7amk:A (2.2) BS01 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147709 7amk:A (2.2) BS02 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147710 7amk:A (2.2) BS03 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147711 7amk:B (2.2) BS01 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147712 7amk:B (2.2) BS02 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147713 7amk:B (2.2) BS03 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147714 7aml:A (3.5) BS01 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147715 7aml:A (3.5) BS02 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147716 7aml:A (3.5) BS03 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147717 7aml:A (3.5) BS04 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147718 7aml:D (3.5) BS01 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147719 7aml:D (3.5) BS02 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147720 7aml:D (3.5) BS03 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147721 7aml:D (3.5) BS04 CA 2.7.10.1 GO:0005509 ... A8E7C6 33484636
    147722 7amp:L (2.64) BS01 ZN N/A N/A N/A N/A
    147723 7amq:L (2.353) BS01 ZN N/A N/A N/A N/A
    147724 7amr:L (1.949) BS01 ZN N/A N/A N/A N/A
    147725 7ams:L (2.419) BS01 ZN N/A N/A N/A N/A
    147726 7amv:A (2.8) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147727 7amv:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147728 7amv:A (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147729 7amv:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    147730 7amv:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... Q49QI2 34556871
    147731 7amx:AAA (2.85) BS01 ZN N/A N/A N/A 34726168
    147732 7amx:AAA (2.85) BS02 ZN N/A N/A N/A 34726168
    147733 7an1:AAA (1.5) BS02 CA ? GO:0016787 ... Q8A789 34616040
    147734 7ana:AAA (2.3) BS01 CA ? GO:0016787 ... Q8A7A3 34616040
    147735 7ana:BBB (2.3) BS01 CA ? GO:0016787 ... Q8A7A3 34616040
    147736 7anb:AAA (2.6) BS02 CA ? GO:0016787 ... Q8A7A3 34616040
    147737 7anb:BBB (2.6) BS02 CA ? GO:0016787 ... Q8A7A3 34616040
    147738 7ane:Ax (3.9) BS02 ZN ? GO:0046872 ... Q4Q7T1 33168716
    147739 7ane:Ax (3.9) BS03 ZN ? GO:0046872 ... Q4Q7T1 33168716
    147740 7ane:BD (3.9) BS01 ZN ? GO:0005737 ... Q4QE11 33168716
    147741 7ane:T (3.9) BS02 ZN ? GO:0005634 ... Q4Q2W9 33168716
    147742 7ane:W (3.9) BS02 ZN ? N/A Q4Q6A3 33168716
    147743 7ao0:A (1.93) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147744 7ao0:B (1.93) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147745 7ao1:A (1.8) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147746 7ao1:B (1.8) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147747 7ao2:A (1.75) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147748 7ao2:B (1.75) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147749 7ao3:A (1.45) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147750 7ao3:B (1.45) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147751 7ao5:A (2.06) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147752 7ao5:B (2.06) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    147753 7ao8:B (4.5) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    147754 7ao8:E (4.5) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    147755 7ao9:B (6.1) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    147756 7ao9:E (6.1) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    147757 7aoa:B (19.4) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    147758 7aoa:E (19.4) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    147759 7aoc:A (3.84) BS01 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147760 7aoc:A (3.84) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147761 7aoc:A (3.84) BS03 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147762 7aoc:B (3.84) BS01 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    147763 7aoc:I (3.84) BS01 ZN ? GO:0000428 ... O94703 33536435
    147764 7aoc:J (3.84) BS01 ZN ? GO:0000428 ... O13877 33536435
    147765 7aoc:L (3.84) BS01 ZN ? GO:0000428 ... P48011 33536435
    147766 7aod:A (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147767 7aod:A (4.5) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147768 7aod:B (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    147769 7aod:I (4.5) BS01 ZN ? GO:0000428 ... O94703 33536435
    147770 7aod:J (4.5) BS01 ZN ? GO:0000428 ... O13877 33536435
    147771 7aod:L (4.5) BS01 ZN ? GO:0000428 ... P48011 33536435
    147772 7aod:M (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147773 7aod:M (4.5) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147774 7aod:N (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    147775 7aod:U (4.5) BS01 ZN ? GO:0000428 ... O94703 33536435
    147776 7aod:V (4.5) BS01 ZN ? GO:0000428 ... O13877 33536435
    147777 7aod:X (4.5) BS01 ZN ? GO:0000428 ... P48011 33536435
    147778 7aoe:A (3.9) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147779 7aoe:A (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    147780 7aoe:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    147781 7aoe:I (3.9) BS01 ZN ? GO:0000428 ... O94703 33536435
    147782 7aoe:L (3.9) BS01 ZN ? GO:0000428 ... P48011 33536435
    147783 7aof:A (2.98) BS01 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147784 7aof:A (2.98) BS02 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147785 7aof:A (2.98) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147786 7aof:B (2.98) BS01 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    147787 7aof:I (2.98) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    147788 7aoh:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147789 7aoh:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147790 7aoh:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    147791 7aoh:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    147792 7aoh:J (2.7) BS01 ZN 2.7.7.6 GO:0000428 ... Q49QI2 34556871
    147793 7aoi:BX (3.5) BS02 ZN ? N/A A0A3L6L637 33576519
    147794 7aoi:BX (3.5) BS03 ZN ? N/A A0A3L6L637 33576519
    147795 7aoi:Bh (3.5) BS01 ZN ? N/A A0A3L6L2V1 33576519
    147796 7aoi:XA (3.5) BS02 ZN ? GO:0005730 ... Q387S8 33576519
    147797 7aom:A (1.95) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    147798 7aom:B (1.95) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    147799 7aop:A (2.35) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    147800 7aor:aa (3.5) BS02 ZN ? GO:0016020 ... Q4DVD2 33168716

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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