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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    147001 6zv9:A (1.85) BS01 TB N/A N/A N/A 33203677
    147002 6zv9:B (1.85) BS01 TB N/A N/A N/A 33203677
    147003 6zvb:A (2.51) BS02 MG ? GO:0000122 ... P31947 N/A
    147004 6zvc:A (2.51) BS02 MG ? GO:0000122 ... P31947 N/A
    147005 6zvd:A (2.5) BS02 MG ? GO:0000122 ... P31947 N/A
    147006 6zve:A (2.51) BS02 MG ? GO:0000122 ... P31947 N/A
    147007 6zvh:a (2.9) BS02 ZN ? GO:0003735 ... P62854 32744497
    147008 6zvh:d (2.9) BS02 ZN ? GO:0002181 ... P62273 32744497
    147009 6zvi:L (3.0) BS02 ZN ? GO:0000028 ... P35997 32744497
    147010 6zvi:O (3.0) BS02 ZN ? GO:0002181 ... P41057 32744497
    147011 6zvj:1 (3.8) BS06 MG 3.6.5.- GO:0000054 ... P61221 33289941
    147012 6zvj:Q (3.8) BS02 ZN ? GO:0003735 ... P62854 33289941
    147013 6zvj:U (3.8) BS02 ZN ? GO:0003735 ... P62979 33289941
    147014 6zvj:l (3.8) BS02 ZN ? GO:0002181 ... P62273 33289941
    147015 6zvk:C2 (3.49) BS03 ZN ? GO:0003735 ... U3KPD5 33296660
    147016 6zvk:E2 (3.49) BS02 ZN ? GO:0003735 ... P63048 33296660
    147017 6zvk:F2 (3.49) BS02 ZN ? GO:0003735 ... G1T040 33296660
    147018 6zvk:H3 (3.49) BS02 ZN ? GO:0003735 ... G1U7M4 33296660
    147019 6zvk:I2 (3.49) BS02 ZN ? GO:0003735 ... G1SY53 33296660
    147020 6zvk:O3 (3.49) BS02 ZN ? GO:0003735 ... Q56JV1 33296660
    147021 6zvp:A (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147022 6zvp:B (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147023 6zvp:C (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147024 6zvp:D (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147025 6zw1:A (1.13) BS01 ZN ? N/A F8W4B7 33830764
    147026 6zwm:E (3.2) BS01 ZN ? GO:0001932 ... Q6R327 33158864
    147027 6zwm:F (3.2) BS01 ZN ? GO:0001932 ... Q6R327 33158864
    147028 6zwo:F (3.0) BS01 ZN ? GO:0001932 ... Q6R327 33158864
    147029 6zww:G (3.16) BS02 CA 3.6.4.13 GO:0003676 ... P43329 34290142
    147030 6zx9:C (2.51973) BS01 ZN 3.2.1.17 GO:0003796 ... A4UDG5
    P00720    		 34339457
    147031 6zxb:A (2.2) BS02 MG ? GO:0000160 ... B0SUI1 33846343
    147032 6zxb:A (2.2) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147033 6zxb:A (2.2) BS04 MG ? GO:0000160 ... B0SUI1 33846343
    147034 6zxb:B (2.2) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147035 6zxb:B (2.2) BS04 MG ? GO:0000160 ... B0SUI1 33846343
    147036 6zxb:B (2.2) BS05 MG ? GO:0000160 ... B0SUI1 33846343
    147037 6zxc:A (2.8) BS01 MG ? GO:0000160 ... B0SUI1 33846343
    147038 6zxc:A (2.8) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147039 6zxc:A (2.8) BS04 MG ? GO:0000160 ... B0SUI1 33846343
    147040 6zxc:B (2.8) BS01 MG ? GO:0000160 ... B0SUI1 33846343
    147041 6zxc:B (2.8) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147042 6zxc:B (2.8) BS04 MG ? GO:0000160 ... B0SUI1 33846343
    147043 6zxc:C (2.8) BS01 MG ? GO:0000160 ... B0SUI1 33846343
    147044 6zxc:C (2.8) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147045 6zxc:C (2.8) BS04 MG ? GO:0000160 ... B0SUI1 33846343
    147046 6zxc:D (2.8) BS01 MG ? GO:0000160 ... B0SUI1 33846343
    147047 6zxc:D (2.8) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147048 6zxc:D (2.8) BS04 MG ? GO:0000160 ... B0SUI1 33846343
    147049 6zxd:y (3.2) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    147050 6zxe:y (3.0) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    147051 6zxf:d (3.7) BS02 ZN ? GO:0002181 ... P62273 33208940
    147052 6zxf:f (3.7) BS02 ZN ? GO:0002181 ... P62979 33208940
    147053 6zxf:y (3.7) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    147054 6zxf:z (3.7) BS02 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    147055 6zxf:z (3.7) BS03 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    147056 6zxg:F (2.6) BS02 MG ? GO:0000028 ... P46782 33208940
    147057 6zxg:O (2.6) BS02 MG ? GO:0000028 ... P62263 33208940
    147058 6zxg:d (2.6) BS02 ZN ? GO:0002181 ... P62273 33208940
    147059 6zxg:d (2.6) BS03 MG ? GO:0002181 ... P62273 33208940
    147060 6zxg:f (2.6) BS02 ZN ? GO:0002181 ... P62979 33208940
    147061 6zxg:h (2.6) BS02 ZN ? GO:0002181 ... P62854 33208940
    147062 6zxg:h (2.6) BS03 MG ? GO:0002181 ... P62854 33208940
    147063 6zxg:z (2.6) BS02 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    147064 6zxg:z (2.6) BS04 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    147065 6zxh:F (2.7) BS02 MG ? GO:0000028 ... P46782 33208940
    147066 6zxh:O (2.7) BS02 MG ? GO:0000028 ... P62263 33208940
    147067 6zxh:d (2.7) BS02 ZN ? GO:0002181 ... P62273 33208940
    147068 6zxh:d (2.7) BS03 MG ? GO:0002181 ... P62273 33208940
    147069 6zxh:f (2.7) BS02 ZN ? GO:0002181 ... P62979 33208940
    147070 6zxh:h (2.7) BS02 ZN ? GO:0002181 ... P62854 33208940
    147071 6zxh:z (2.7) BS02 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    147072 6zxh:z (2.7) BS04 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    147073 6zxm:A (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147074 6zxm:B (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147075 6zxm:C (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147076 6zxm:D (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147077 6zxm:E (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147078 6zxm:F (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    147079 6zxq:A (1.4) BS04 MG 6.3.4.4 GO:0000166 ... P56137 N/A
    147080 6zxs:3 (3.0) BS06 CA ? GO:0009765 ... Q32904 N/A
    147081 6zxs:B (3.0) BS48 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 N/A
    147082 6zxw:H (2.19) BS01 ZN ? GO:0046872 ... A0A117KMN5 N/A
    147083 6zyh:A (1.88) BS02 CA 3.6.4.10 GO:0005524 ... G3I8R9 33295873
    147084 6zyh:B (1.88) BS02 CA 3.6.4.10 GO:0005524 ... G3I8R9 33295873
    147085 6zyi:A (1.52) BS02 CA ? GO:0005524 ... P0DMV8 33295873
    147086 6zyj:A (1.85) BS01 CA 3.6.4.10 GO:0005524 ... P11142 33295873
    147087 6zyj:B (1.85) BS02 CA 3.6.4.10 GO:0005524 ... P11142 33295873
    147088 6zym:P (3.4) BS03 ZN ? GO:0003723 ... Q9NW64 33007253
    147089 6zym:P (3.4) BS04 ZN ? GO:0003723 ... Q9NW64 33007253
    147090 6zym:P (3.4) BS05 ZN ? GO:0003723 ... Q9NW64 33007253
    147091 6zym:Q (3.4) BS02 ZN ? GO:0000398 ... P41223 33007253
    147092 6zym:Q (3.4) BS03 ZN ? GO:0000398 ... P41223 33007253
    147093 6zym:Q (3.4) BS04 ZN ? GO:0000398 ... P41223 33007253
    147094 6zym:u (3.4) BS06 ZN ? GO:0000398 ... Q9BW85 33007253
    147095 6zyn:A (1.40001) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147096 6zyn:A (1.40001) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147097 6zyn:B (1.40001) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147098 6zyn:B (1.40001) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147099 6zyo:A (1.45) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147100 6zyo:A (1.45) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147101 6zyo:B (1.45) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147102 6zyo:B (1.45) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 34164056
    147103 6zyp:A (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147104 6zyp:A (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147105 6zyp:B (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147106 6zyp:B (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147107 6zyq:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147108 6zyq:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147109 6zyq:B (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147110 6zyq:B (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 34164056
    147111 6zyr:A (1.87) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147112 6zyr:A (1.87) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147113 6zyr:B (1.87) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147114 6zyr:B (1.87) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147115 6zyr:C (1.87) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147116 6zyr:C (1.87) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147117 6zyr:D (1.87) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147118 6zyr:D (1.87) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147119 6zys:A (1.87001) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147120 6zys:A (1.87001) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147121 6zys:B (1.87001) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147122 6zys:B (1.87001) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147123 6zys:C (1.87001) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147124 6zys:C (1.87001) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147125 6zys:D (1.87001) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147126 6zys:D (1.87001) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34164056
    147127 6zyu:B (1.9) BS01 ZN ? GO:0015276 ... P19491 34242002
    147128 6zyu:C (1.9) BS03 ZN ? GO:0015276 ... P19491 34242002
    147129 6zyu:C (1.9) BS04 ZN ? GO:0015276 ... P19491 34242002
    147130 6zz6:A (3.4) BS03 MG ? GO:0005524 ... P32908 32930661
    147131 6zz6:B (3.4) BS04 MG ? GO:0005524 ... P47037 32930661
    147132 6zzu:A (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147133 6zzu:B (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147134 6zzu:C (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147135 6zzu:D (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    147136 721p:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 2199064
    147137 7a01:C2 (3.6) BS03 ZN ? GO:0003735 ... U3KPD5 33296660
    147138 7a01:E2 (3.6) BS02 ZN ? GO:0003735 ... P63048 33296660
    147139 7a01:F2 (3.6) BS02 ZN ? GO:0003735 ... G1T040 33296660
    147140 7a01:H3 (3.6) BS02 ZN ? GO:0003735 ... G1U7M4 33296660
    147141 7a01:I2 (3.6) BS02 ZN ? GO:0003735 ... G1SY53 33296660
    147142 7a01:O3 (3.6) BS02 ZN ? GO:0003735 ... Q56JV1 33296660
    147143 7a08:a (3.11) BS01 ZN 2.7.7.86 N/A Q8C6L5 32911480
    147144 7a09:J (3.5) BS06 MG 3.6.5.- GO:0000054 ... P61221 33289941
    147145 7a09:Q (3.5) BS02 ZN ? GO:0002181 ... P62854 33289941
    147146 7a09:U (3.5) BS02 ZN ? GO:0002181 ... P62979 33289941
    147147 7a09:Y (3.5) BS03 MG 3.6.5.3 GO:0000049 ... P41091 33289941
    147148 7a09:l (3.5) BS02 ZN ? GO:0002181 ... P62273 33289941
    147149 7a0b:A (1.77) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 34081441
    147150 7a0c:A (1.9) BS02 MG ? GO:0005515 ... P33590 33079395
    147151 7a0c:B (1.9) BS02 MG ? GO:0005515 ... P33590 33079395
    147152 7a0c:B (1.9) BS03 MG ? GO:0005515 ... P33590 33079395
    147153 7a0c:B (1.9) BS04 MG ? GO:0005515 ... P33590 33079395
    147154 7a0p:A (2.18) BS01 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    147155 7a0r:A (3.3) BS02 MG ? GO:0002181 ... Q9RXJ9 34417608
    147156 7a0r:J (3.3) BS03 MG ? GO:0000049 ... Q9RXJ5 34417608
    147157 7a0r:M (3.3) BS02 MG ? GO:0003735 ... Q9RWB4 34417608
    147158 7a0s:A (3.22) BS02 MG ? GO:0002181 ... Q9RXJ9 34417608
    147159 7a0s:J (3.22) BS03 MG ? GO:0000049 ... Q9RXJ5 34417608
    147160 7a0s:M (3.22) BS02 MG ? GO:0003735 ... Q9RWB4 34417608
    147161 7a0v:A (2.3) BS01 MG 3.1.3.36 GO:0016791 ... O43426 33349335
    147162 7a0x:F (2.37) BS01 CA N/A N/A N/A N/A
    147163 7a12:A (2.0) BS02 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147164 7a12:A (2.0) BS03 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147165 7a13:A (2.04) BS02 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147166 7a13:A (2.04) BS03 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147167 7a14:A (2.14) BS02 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147168 7a14:A (2.14) BS03 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147169 7a15:A (2.15) BS02 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147170 7a15:A (2.15) BS03 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147171 7a16:A (1.9) BS02 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147172 7a16:A (1.9) BS03 MN 3.4.11.18 GO:0006508 ... P50579 32919012
    147173 7a18:A (3.4) BS02 MG ? GO:0002181 ... Q9RXJ9 34417608
    147174 7a19:A (1.21) BS01 MG 4.1.1.46 GO:0005575 ... P80402 33090643
    147175 7a19:B (1.21) BS01 MG 4.1.1.46 GO:0005575 ... P80402 33090643
    147176 7a1a:A (1.53) BS01 MG 4.1.1.46 GO:0005575 ... P80402 33090643
    147177 7a1a:B (1.53) BS01 MG 4.1.1.46 GO:0005575 ... P80402 33090643
    147178 7a1f:A (1.8) BS01 FE 3.1.-.-
    3.5.2.6    		 N/A Q9H816 34387694
    147179 7a1f:L (1.8) BS01 FE 3.1.-.-
    3.5.2.6    		 N/A Q9H816 34387694
    147180 7a1g:M (3.0) BS02 ZN ? GO:0002181 ... P41057 33289941
    147181 7a1g:N (3.0) BS02 ZN ? GO:0003735 ... P05759 33289941
    147182 7a1g:x (3.0) BS05 MG ? GO:0000054 ... Q03195 33289941
    147183 7a1j:A (1.9) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147184 7a1k:A (1.99) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147185 7a1l:A (2.29) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147186 7a1m:A (2.18) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147187 7a1n:A (2.01) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147188 7a1o:A (2.21) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147189 7a1p:A (1.76) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147190 7a1q:A (1.75) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147191 7a1r:A (1.5) BS01 CA ? GO:0008289 ... Q388M5 33997700
    147192 7a1r:A (1.5) BS02 CA ? GO:0008289 ... Q388M5 33997700
    147193 7a1r:B (1.5) BS01 CA ? GO:0008289 ... Q388M5 33997700
    147194 7a1r:B (1.5) BS02 CA ? GO:0008289 ... Q388M5 33997700
    147195 7a1s:A (2.01) BS03 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 34759269
    147196 7a23:P (3.7) BS01 ZN ? GO:0005739 ... Q9M9M6 33060577
    147197 7a24:P (3.8) BS01 ZN ? GO:0005739 ... Q9M9M6 33060577
    147198 7a26:CCC (2.98) BS01 CA ? GO:0046872 ... A0A1Q4NVM5 33742033
    147199 7a26:FFF (2.98) BS01 CA ? GO:0046872 ... A0A1Q4NVM5 33742033
    147200 7a26:GGG (2.98) BS01 CA ? GO:0046872 ... A0A1Q4NVM5 33742033
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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