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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    146601 6zmb:B (1.7) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    146602 6zmb:B (1.7) BS03 CA ? GO:0006400 ... A0A179QS89 32785618
    146603 6zmb:C (1.7) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    146604 6zmb:C (1.7) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    146605 6zmc:B (2.5) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    146606 6zmc:B (2.5) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    146607 6zmc:B (2.5) BS03 CA ? GO:0006400 ... A0A179QS89 32785618
    146608 6zmc:C (2.5) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    146609 6zmc:C (2.5) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    146610 6zmd:A (2.64) BS02 MG 3.6.4.10 GO:0005524 ... P11021 33893288
    146611 6zmd:A (2.64) BS03 MG 3.6.4.10 GO:0005524 ... P11021 33893288
    146612 6zme:LA (3.0) BS03 MG ? GO:0002181 ... P62917 32680882
    146613 6zme:LA (3.0) BS04 MG ? GO:0002181 ... P62917 32680882
    146614 6zme:Le (3.0) BS02 MG ? GO:0002181 ... P62910 32680882
    146615 6zme:Lg (3.0) BS02 MG ? GO:0002181 ... P49207 32680882
    146616 6zme:Lj (3.0) BS03 ZN ? GO:0002181 ... P61927 32680882
    146617 6zme:Lm (3.0) BS02 ZN ? GO:0002181 ... P62987 32680882
    146618 6zme:Lo (3.0) BS03 ZN ? GO:0002181 ... P83881 32680882
    146619 6zme:Lp (3.0) BS02 ZN ? GO:0002181 ... P61513 32680882
    146620 6zme:Sa (3.0) BS02 ZN ? GO:0002181 ... P62854 32680882
    146621 6zme:Sd (3.0) BS02 ZN ? GO:0002181 ... P62273 32680882
    146622 6zme:Sf (3.0) BS02 ZN ? GO:0002181 ... P62979 32680882
    146623 6zmi:LA (2.6) BS03 MG ? GO:0002181 ... P62917 32680882
    146624 6zmi:Le (2.6) BS02 MG ? GO:0002181 ... P62910 32680882
    146625 6zmi:Lg (2.6) BS02 ZN ? GO:0002181 ... P49207 32680882
    146626 6zmi:Lj (2.6) BS03 ZN ? GO:0002181 ... P61927 32680882
    146627 6zmi:Lm (2.6) BS02 ZN ? GO:0002181 ... P62987 32680882
    146628 6zmi:Lo (2.6) BS03 ZN ? GO:0002181 ... P83881 32680882
    146629 6zmi:Lp (2.6) BS02 ZN ? GO:0002181 ... P61513 32680882
    146630 6zmi:Sa (2.6) BS02 ZN ? GO:0002181 ... P62854 32680882
    146631 6zmi:Sd (2.6) BS02 ZN ? GO:0002181 ... P62273 32680882
    146632 6zmi:Sf (2.6) BS02 ZN ? GO:0002181 ... P62979 32680882
    146633 6zmn:A (2.333) BS01 ZN ? GO:0005667 ... P84022 33510867
    146634 6zmn:B (2.333) BS02 ZN ? GO:0005667 ... P84022 33510867
    146635 6zmo:LA (3.1) BS02 MG ? GO:0002181 ... P62917 32680882
    146636 6zmo:Le (3.1) BS02 MG ? GO:0002181 ... P62910 32680882
    146637 6zmo:Lg (3.1) BS02 MG ? GO:0002181 ... P49207 32680882
    146638 6zmo:Lg (3.1) BS03 ZN ? GO:0002181 ... P49207 32680882
    146639 6zmo:Lj (3.1) BS03 ZN ? GO:0002181 ... P61927 32680882
    146640 6zmo:Lm (3.1) BS02 ZN ? GO:0002181 ... P62987 32680882
    146641 6zmo:Lo (3.1) BS03 ZN ? GO:0002181 ... P83881 32680882
    146642 6zmo:Lp (3.1) BS02 ZN ? GO:0002181 ... P61513 32680882
    146643 6zmo:Sa (3.1) BS02 ZN ? GO:0002181 ... P62854 32680882
    146644 6zmo:Sd (3.1) BS02 ZN ? GO:0002181 ... P62273 32680882
    146645 6zmt:f (3.0) BS02 ZN ? GO:0002181 ... P62273 32680882
    146646 6zmt:g (3.0) BS02 ZN ? GO:0002181 ... P62979 32680882
    146647 6zmw:Q (3.7) BS03 ZN ? GO:0002181 ... P62854 32883864
    146648 6zmw:V (3.7) BS02 MG ? GO:0000028 ... P46782 32883864
    146649 6zmw:d (3.7) BS02 MG ? GO:0000028 ... P39019 32883864
    146650 6zmw:f (3.7) BS02 MG ? GO:0002181 ... P62269 32883864
    146651 6zmw:k (3.7) BS02 ZN ? GO:0002181 ... P62979 32883864
    146652 6zn2:A (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    146653 6zn2:C (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    146654 6zn2:E (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    146655 6zn2:G (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    146656 6zn4:A (1.679) BS01 MG 1.1.1.40 GO:0004470 ... Q6MM14
    Q6MM15    		 33623032
    146657 6zn4:B (1.679) BS01 MG 1.1.1.40 GO:0004470 ... Q6MM14
    Q6MM15    		 33623032
    146658 6zn5:c (3.2) BS02 ZN ? GO:0003735 ... P62854 32680882
    146659 6zn5:f (3.2) BS02 ZN ? GO:0002181 ... P62273 32680882
    146660 6zn5:g (3.2) BS02 ZN ? GO:0003735 ... P62979 32680882
    146661 6zn7:A (1.67) BS01 MG 1.1.1.40 GO:0004470 ... Q6MM14
    Q6MM15    		 33623032
    146662 6zn7:B (1.67) BS01 MG 1.1.1.40 GO:0004470 ... Q6MM14
    Q6MM15    		 33623032
    146663 6znc:A (1.64) BS02 ZN ? GO:0000976 ... P04637 34862374
    146664 6znd:A (2.35) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    146665 6znd:B (2.35) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    146666 6znl:Y (3.8) BS01 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146667 6znl:Y (3.8) BS02 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146668 6znl:Y (3.8) BS03 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146669 6znm:Y (4.1) BS01 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146670 6znm:Y (4.1) BS02 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146671 6znm:Y (4.1) BS03 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146672 6znn:Y (4.5) BS01 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146673 6znn:Y (4.5) BS02 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146674 6znn:Y (4.5) BS03 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146675 6zno:Y (6.8) BS01 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146676 6zno:Y (6.8) BS02 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146677 6zno:Y (6.8) BS03 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146678 6znp:A (3.16) BS02 ZN 3.6.4.- GO:0003676 ... P50830 33300032
    146679 6znp:B (3.16) BS02 ZN 3.6.4.- GO:0003676 ... P50830 33300032
    146680 6znq:A (3.34) BS02 ZN 3.6.4.- GO:0003676 ... P50830 33300032
    146681 6znq:B (3.34) BS02 ZN 3.6.4.- GO:0003676 ... P50830 33300032
    146682 6zns:A (3.32) BS01 ZN 3.6.4.- GO:0003676 ... P50830 33300032
    146683 6znv:A (1.14) BS02 ZN ? GO:0006338 ... Q86U86 33216538
    146684 6zo4:Y (8.2) BS01 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146685 6zo4:Y (8.2) BS02 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146686 6zo4:Y (8.2) BS03 ZN ? GO:0001725 ... A0A4X1TB62 33734450
    146687 6zoj:F (2.8) BS02 MG ? GO:0000028 ... P46782 32908316
    146688 6zoj:L (2.8) BS02 MG ? GO:0002181 ... P62280 32908316
    146689 6zoj:O (2.8) BS02 MG ? GO:0000028 ... P62263 32908316
    146690 6zoj:S (2.8) BS02 MG ? GO:0002181 ... P62269 32908316
    146691 6zoj:S (2.8) BS03 MG ? GO:0002181 ... P62269 32908316
    146692 6zoj:a (2.8) BS02 ZN ? GO:0003735 ... P62854 32908316
    146693 6zoj:d (2.8) BS02 ZN ? GO:0002181 ... P62273 32908316
    146694 6zoj:f (2.8) BS02 ZN ? GO:0003735 ... P62979 32908316
    146695 6zok:L (2.8) BS02 MG ? GO:0002181 ... P62280 32908316
    146696 6zok:O (2.8) BS02 MG ? GO:0000028 ... P62263 32908316
    146697 6zok:a (2.8) BS02 ZN ? GO:0003735 ... P62854 32908316
    146698 6zol:F (2.8) BS02 MG ? GO:0000028 ... P46782 32908316
    146699 6zol:S (2.8) BS02 MG ? GO:0002181 ... P62269 32908316
    146700 6zol:S (2.8) BS03 MG ? GO:0002181 ... P62269 32908316
    146701 6zol:d (2.8) BS02 ZN ? GO:0002181 ... P62273 32908316
    146702 6zol:f (2.8) BS02 ZN ? GO:0003735 ... P62979 32908316
    146703 6zon:Q (3.0) BS02 ZN ? GO:0002181 ... P62854 32680882
    146704 6zon:U (3.0) BS02 ZN ? GO:0002181 ... P62979 32680882
    146705 6zon:l (3.0) BS02 ZN ? GO:0002181 ... P62273 32680882
    146706 6zoo:3 (2.74) BS03 CA ? GO:0009765 ... Q32904 34085703
    146707 6zoo:B (2.74) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 34085703
    146708 6zoo:P (2.74) BS01 CU ? GO:0005507 ... P16002 34085703
    146709 6zop:A (-1.00) BS01 ZN ? N/A A0DFJ7 33926516
    146710 6zop:A (-1.00) BS02 ZN ? N/A A0DFJ7 33926516
    146711 6zou:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 33452852
    146712 6zou:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    146713 6zou:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 33452852
    146714 6zou:V (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P25043 33452852
    146715 6zou:W (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 33452852
    146716 6zou:Y (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    146717 6zou:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 33452852
    146718 6zp3:A (1.8) BS03 CA 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    146719 6zp4:4 (2.9) BS02 ZN ? GO:0001701 ... P20042 32680882
    146720 6zp4:Q (2.9) BS02 ZN ? GO:0002181 ... P62854 32680882
    146721 6zp4:U (2.9) BS02 ZN ? GO:0002181 ... P62979 32680882
    146722 6zp4:Y (2.9) BS03 MG 3.6.5.3 GO:0000049 ... P41091 32680882
    146723 6zp4:l (2.9) BS02 ZN ? GO:0002181 ... P62273 32680882
    146724 6zp6:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 33452852
    146725 6zp6:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    146726 6zp6:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 33452852
    146727 6zp6:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 33452852
    146728 6zp6:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    146729 6zp6:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 33452852
    146730 6zp8:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 33452852
    146731 6zp8:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    146732 6zp8:N (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P38624 33452852
    146733 6zp8:V (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 33452852
    146734 6zp8:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    146735 6zpa:A (0.860003) BS02 ZN N/A N/A N/A 33893297
    146736 6zpb:A (1.72097) BS02 CO N/A N/A N/A 33893297
    146737 6zpb:A (1.72097) BS03 CO N/A N/A N/A 33893297
    146738 6zpc:A (1.26836) BS02 ZN N/A N/A N/A 33893297
    146739 6zpe:A (1.58) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33036230
    146740 6zpe:A (1.58) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33036230
    146741 6zpi:A (4.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 33252036
    146742 6zpi:C (4.5) BS02 MG ? GO:0003777 ... Q9NS87 33252036
    146743 6zpl:A (3.945) BS02 NA ? GO:0016020 ... P48067 33658720
    146744 6zpl:B (3.945) BS02 NA ? GO:0016020 ... P48067 33658720
    146745 6zpo:D (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    146746 6zpq:A (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146747 6zpq:B (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146748 6zpq:B (1.85) BS02 MG 3.4.15.1 GO:0006508 ... P12821 33067882
    146749 6zpq:C (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146750 6zpq:D (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146751 6zpt:A (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146752 6zpt:B (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146753 6zpt:C (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146754 6zpt:D (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146755 6zpu:A (2.0) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    146756 6zq2:A (1.29) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    146757 6zqb:Db (3.9) BS02 ZN ? GO:0000028 ... P35997 32943521
    146758 6zqb:UX (3.9) BS04 ZN ? GO:0000447 ... Q05498 32943521
    146759 6zqc:UX (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943521
    146760 6zqd:CL (3.8) BS03 MG ? GO:0000462 ... Q08965 32943521
    146761 6zqd:Db (3.8) BS02 ZN ? GO:0000028 ... P35997 32943521
    146762 6zqd:UX (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943521
    146763 6zqe:Db (7.1) BS02 ZN ? GO:0000028 ... P35997 32943521
    146764 6zqg:CL (3.5) BS03 MG ? GO:0000462 ... Q08965 32943521
    146765 6zqg:UX (3.5) BS02 ZN ? GO:0000447 ... Q05498 32943521
    146766 6zqm:F (3.29) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    146767 6zqn:D (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    146768 6zqn:F (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    146769 6zqr:A (1.93) BS01 CA ? N/A Q8N539 N/A
    146770 6zqr:B (1.93) BS01 CA ? N/A Q8N539 N/A
    146771 6zqt:A (1.51) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    146772 6zqt:B (1.51) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    146773 6zqx:A (1.84) BS01 CA ? N/A Q8N539 N/A
    146774 6zqx:B (1.84) BS01 CA ? N/A Q8N539 N/A
    146775 6zqy:A (1.85) BS01 CA ? N/A Q8N539 N/A
    146776 6zqy:B (1.85) BS01 CA ? N/A Q8N539 N/A
    146777 6zqz:A (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    146778 6zqz:B (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    146779 6zqz:C (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    146780 6zqz:D (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    146781 6zr0:A (1.94) BS01 CA ? N/A Q8N539 N/A
    146782 6zr0:B (1.94) BS02 CA ? N/A Q8N539 N/A
    146783 6zr2:R (3.1) BS01 ZN ? GO:0001822 ... P52503 33067417
    146784 6zr3:A (1.97) BS01 CA ? N/A Q8N539 N/A
    146785 6zr3:B (1.97) BS01 CA ? N/A Q8N539 N/A
    146786 6zr4:A (2.0) BS01 CA ? N/A Q8N539 N/A
    146787 6zr4:B (2.0) BS01 CA ? N/A Q8N539 N/A
    146788 6zr5:C (2.699) BS01 ZN 2.3.1.48 N/A P15336 33188182
    146789 6zr5:D (2.699) BS01 ZN 2.3.1.48 N/A P15336 33188182
    146790 6zr8:A (1.79) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    146791 6zr9:A (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... P43166 N/A
    146792 6zrb:A (1.55) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    146793 6zrb:A (1.55) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    146794 6zrb:A (1.55) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    146795 6zrn:A (1.482) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    146796 6zrn:B (1.482) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    146797 6zs1:A (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    146798 6zs1:B (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    146799 6zs1:C (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    146800 6zs1:C (1.56) BS02 CU 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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