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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    146401 6zif:D (2.2) BS15 CU1 N/A N/A N/A N/A
    146402 6zif:D (2.2) BS16 CU1 N/A N/A N/A N/A
    146403 6zii:A (2.5) BS01 MG ? GO:0000160 ... P58663 33638994
    146404 6zii:B (2.5) BS01 MG ? GO:0000160 ... P58663 33638994
    146405 6zij:A (1.6) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146406 6zij:A (1.6) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146407 6zij:A (1.6) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146408 6zij:B (1.6) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146409 6zij:B (1.6) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146410 6zij:B (1.6) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146411 6zij:C (1.6) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146412 6zij:C (1.6) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146413 6zij:C (1.6) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146414 6zij:C (1.6) BS06 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146415 6zij:D (1.6) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146416 6zij:D (1.6) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146417 6zij:D (1.6) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146418 6zij:D (1.6) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146419 6zij:E (1.6) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146420 6zij:E (1.6) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146421 6zij:E (1.6) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146422 6zij:F (1.6) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146423 6zij:F (1.6) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146424 6zij:F (1.6) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146425 6zio:B (1.55) BS01 MG 3.6.5.2 GO:0000139 ... P01111 32779487
    146426 6zip:A (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146427 6zip:A (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146428 6zip:A (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146429 6zip:A (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146430 6zip:B (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146431 6zip:B (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146432 6zip:B (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146433 6zip:C (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146434 6zip:C (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146435 6zip:C (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146436 6zip:C (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146437 6zip:D (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146438 6zip:D (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146439 6zip:D (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146440 6zip:D (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146441 6zip:E (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146442 6zip:E (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146443 6zip:E (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146444 6zip:F (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146445 6zip:F (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146446 6zip:F (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146447 6zip:F (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146448 6zip:G (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146449 6zip:G (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146450 6zip:G (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146451 6zip:H (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146452 6zip:H (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146453 6zip:H (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146454 6zip:H (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146455 6zip:I (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146456 6zip:I (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146457 6zip:I (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146458 6zip:I (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146459 6zip:J (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146460 6zip:J (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146461 6zip:J (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146462 6zip:J (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146463 6zip:K (2.05) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146464 6zip:K (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146465 6zip:K (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146466 6zip:K (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146467 6zip:L (2.05) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146468 6zip:L (2.05) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146469 6zip:L (2.05) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146470 6zip:L (2.05) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 33870857
    146471 6zix:A (3.4) BS03 MG ? GO:0000160 ... P58663 33638994
    146472 6zix:B (3.4) BS03 MG ? GO:0000160 ... P58663 33638994
    146473 6ziz:A (1.785) BS02 MG 3.6.5.2 GO:0000139 ... P01111 32779487
    146474 6ziz:B (1.785) BS02 MG 3.6.5.2 GO:0000139 ... P01111 32779487
    146475 6zj0:A (1.763) BS01 MG 3.6.5.2 GO:0003924 ... P01112 32779487
    146476 6zj2:A (3.38) BS04 MG ? GO:0000160 ... P58663 33638994
    146477 6zj2:B (3.38) BS04 MG ? GO:0000160 ... P58663 33638994
    146478 6zj2:C (3.38) BS03 MG ? GO:0000160 ... P58663 33638994
    146479 6zj2:D (3.38) BS03 MG ? GO:0000160 ... P58663 33638994
    146480 6zj3:L2 (3.15) BS04 ZN N/A GO:0003735 ... N/A 33091122
    146481 6zj3:L4 (3.15) BS05 ZN N/A GO:0003735 ... N/A 33091122
    146482 6zj3:L5 (3.15) BS04 ZN N/A GO:0003735 ... N/A 33091122
    146483 6zj3:Ly (3.15) BS07 ZN N/A GO:0003735 ... N/A 33091122
    146484 6zj3:Sb (3.15) BS02 ZN N/A GO:0003735 ... N/A 33091122
    146485 6zjk:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146486 6zjk:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146487 6zjk:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146488 6zjk:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146489 6zjk:C (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146490 6zjk:C (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146491 6zjk:D (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146492 6zjk:D (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    146493 6zjo:A (2.01) BS01 ZN 3.6.1.- GO:0003924 ... Q9KX08 34749534
    146494 6zjo:B (2.01) BS01 ZN 3.6.1.- GO:0003924 ... Q9KX08 34749534
    146495 6zk0:AAA (1.47) BS01 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 33006574
    146496 6zk0:BBB (1.47) BS01 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 33006574
    146497 6zk0:BBB (1.47) BS02 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 33006574
    146498 6zk1:A (1.99) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146499 6zk1:B (1.99) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146500 6zk1:C (1.99) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146501 6zk1:D (1.99) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146502 6zk2:A (2.2) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146503 6zk2:B (2.2) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146504 6zk2:C (2.2) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146505 6zk2:D (2.2) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146506 6zk3:A (1.75) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146507 6zk3:B (1.75) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146508 6zk3:C (1.75) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146509 6zk3:D (1.75) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146510 6zk3:E (1.75) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146511 6zk3:F (1.75) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146512 6zk4:A (1.95) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146513 6zk4:B (1.95) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146514 6zk4:C (1.95) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146515 6zk4:D (1.95) BS01 CA ? GO:0006139 ... B6THD4 38044809
    146516 6zk5:A (1.9) BS01 CA 3.2.2.- GO:0006139 ... B6T563 38044809
    146517 6zk5:B (1.9) BS02 CA 3.2.2.- GO:0006139 ... B6T563 38044809
    146518 6zk6:A (1.9) BS01 MN 3.1.3.16 GO:0000164 ... P62136 33085143
    146519 6zk6:A (1.9) BS02 MN 3.1.3.16 GO:0000164 ... P62136 33085143
    146520 6zk6:A (1.9) BS03 FE 3.1.3.16 GO:0000164 ... P62136 33085143
    146521 6zk6:A (1.9) BS04 FE 3.1.3.16 GO:0000164 ... P62136 33085143
    146522 6zk8:A (1.83) BS01 FE ? GO:0000166 ... A0A452CSW8 32940290
    146523 6zk8:A (1.83) BS03 FE ? GO:0000166 ... A0A452CSW8 32940290
    146524 6zk8:O (1.83) BS01 FE ? GO:0000166 ... A0A452CSW8 32940290
    146525 6zk8:O (1.83) BS02 FE ? GO:0000166 ... A0A452CSW8 32940290
    146526 6zk9:b (2.3) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146527 6zkc:b (3.1) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146528 6zkd:b (2.7) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146529 6zke:b (2.6) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146530 6zkf:b (2.8) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146531 6zkg:b (3.4) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146532 6zkh:b (3.0) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146533 6zki:b (2.8) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146534 6zkj:b (3.0) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146535 6zkk:b (3.7) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146536 6zkl:b (3.1) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146537 6zkm:b (2.8) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146538 6zkn:b (2.9) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146539 6zko:b (3.8) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146540 6zkp:b (3.2) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146541 6zkq:b (3.3) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146542 6zkr:b (3.5) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146543 6zks:b (3.1) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146544 6zkt:b (2.8) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146545 6zku:b (3.0) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146546 6zkv:b (2.9) BS01 ZN N/A GO:0006120 ... N/A 32972993
    146547 6zl7:A (1.5) BS01 MG 3.1.1.3 GO:0004806 ... A0A142J6I6 N/A
    146548 6zl7:B (1.5) BS01 MG 3.1.1.3 GO:0004806 ... A0A142J6I6 N/A
    146549 6zli:A (1.73) BS01 MG 3.6.5.2 GO:0003924 ... P01116 32779487
    146550 6zli:B (1.73) BS01 MG 3.6.5.2 GO:0003924 ... P01116 32779487
    146551 6zlp:A (2.15) BS03 CA 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    146552 6zlq:A (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146553 6zlq:C (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146554 6zlq:D (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146555 6zlq:E (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146556 6zlq:I (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146557 6zlq:J (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146558 6zlq:K (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146559 6zlq:L (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146560 6zlq:M (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146561 6zlq:N (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146562 6zlq:O (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146563 6zlq:S (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146564 6zlq:V (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    146565 6zlw:c (2.6) BS02 ZN ? GO:0002181 ... P62854 32680882
    146566 6zlw:f (2.6) BS02 ZN ? GO:0002181 ... P62273 32680882
    146567 6zlz:A (3.52) BS01 CA ? GO:0005198 ... B0G0W3 32699083
    146568 6zlz:B (3.52) BS01 CA ? GO:0005198 ... B0G0W3 32699083
    146569 6zlz:C (3.52) BS01 CA ? GO:0005198 ... B0G0W3 32699083
    146570 6zlz:D (3.52) BS01 CA ? GO:0005198 ... B0G0W3 32699083
    146571 6zlz:E (3.52) BS01 CA ? GO:0005198 ... B0G0W3 32699083
    146572 6zlz:F (3.52) BS01 CA ? GO:0005198 ... B0G0W3 32699083
    146573 6zm0:AAA (1.471) BS01 MG ? GO:0008360 ... Q9HVU1 34016967
    146574 6zm5:0 (2.89) BS02 ZN ? GO:0003723 ... Q9BYC8 33602856
    146575 6zm5:4 (2.89) BS02 ZN ? GO:0003735 ... Q9P0J6 33602856
    146576 6zm5:AB (2.89) BS02 MG ? GO:0003735 ... Q9Y399 33602856
    146577 6zm5:AO (2.89) BS02 ZN ? GO:0003735 ... Q9Y676 33602856
    146578 6zm5:D (2.89) BS02 MG ? GO:0003723 ... Q5T653 33602856
    146579 6zm6:0 (2.59) BS02 ZN ? GO:0003723 ... Q9BYC8 33602856
    146580 6zm6:4 (2.59) BS02 ZN ? GO:0003735 ... Q9P0J6 33602856
    146581 6zm6:AB (2.59) BS02 MG ? GO:0003735 ... Q9Y399 33602856
    146582 6zm6:AO (2.59) BS02 ZN ? GO:0003735 ... Q9Y676 33602856
    146583 6zm6:D (2.59) BS02 MG ? GO:0003723 ... Q5T653 33602856
    146584 6zm7:LA (2.7) BS03 MG ? GO:0002181 ... P62917 32680882
    146585 6zm7:Le (2.7) BS02 MG ? GO:0002181 ... P62910 32680882
    146586 6zm7:Lg (2.7) BS02 MG ? GO:0002181 ... P49207 32680882
    146587 6zm7:Lg (2.7) BS03 ZN ? GO:0002181 ... P49207 32680882
    146588 6zm7:Lj (2.7) BS03 ZN ? GO:0002181 ... P61927 32680882
    146589 6zm7:Lm (2.7) BS02 ZN ? GO:0002181 ... P62987 32680882
    146590 6zm7:Lo (2.7) BS03 ZN ? GO:0002181 ... P83881 32680882
    146591 6zm7:Lp (2.7) BS02 ZN ? GO:0002181 ... P61513 32680882
    146592 6zm7:Sa (2.7) BS02 ZN ? GO:0002181 ... P62854 32680882
    146593 6zm7:Sd (2.7) BS02 ZN ? GO:0002181 ... P62273 32680882
    146594 6zm7:Sf (2.7) BS02 ZN ? GO:0002181 ... P62979 32680882
    146595 6zma:B (2.15) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    146596 6zma:B (2.15) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    146597 6zma:B (2.15) BS03 CA ? GO:0006400 ... A0A179QS89 32785618
    146598 6zma:C (2.15) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    146599 6zma:C (2.15) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    146600 6zmb:B (1.7) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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