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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    146201 6zbn:F (2.01) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146202 6zbo:A (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146203 6zbo:B (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146204 6zbo:C (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146205 6zbo:D (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146206 6zbo:E (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146207 6zbo:F (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146208 6zca:Y (4.2) BS01 ZN 2.7.7.6 GO:0000287 ... P37871 33339827
    146209 6zce:g (5.3) BS02 ZN ? GO:0000028 ... P05759 33289941
    146210 6zcj:A (1.53) BS02 MG ? GO:0000122 ... P31947 33159816
    146211 6zct:A (2.55) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33036230
    146212 6zct:A (2.55) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33036230
    146213 6zcv:A (1.7) BS01 CA 1.1.2.8 GO:0005509 ... Q88JH0 N/A
    146214 6zdy:A (1.45) BS01 CA ? GO:0001533 ... P31725 33359632
    146215 6zdy:A (1.45) BS02 CA ? GO:0001533 ... P31725 33359632
    146216 6zdy:A (1.45) BS03 ZN ? GO:0001533 ... P31725 33359632
    146217 6zdy:A (1.45) BS04 ZN ? GO:0001533 ... P31725 33359632
    146218 6ze9:A (2.9) BS01 ZN ? N/A Q96JC1 32724865
    146219 6ze9:B (2.9) BS01 ZN ? N/A Q96JC1 32724865
    146220 6ze9:C (2.9) BS01 ZN ? N/A Q96JC1 32724865
    146221 6zec:H (1.65) BS01 MG N/A N/A N/A 34424958
    146222 6zee:A (1.9) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146223 6zee:A (1.9) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146224 6zee:B (1.9) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146225 6zee:B (1.9) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146226 6zee:I (1.9) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146227 6zee:I (1.9) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146228 6zee:K (1.9) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146229 6zee:K (1.9) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146230 6zee:P (1.9) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146231 6zee:P (1.9) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146232 6zee:Q (1.9) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146233 6zee:Q (1.9) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146234 6zef:A (1.94) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146235 6zef:B (1.94) BS01 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146236 6zef:B (1.94) BS02 MN 3.1.3.16 GO:0016787 ... P62136 32975518
    146237 6zeg:A (1.09) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146238 6zeg:A (1.09) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146239 6zeg:B (1.09) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146240 6zeg:B (1.09) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146241 6zeh:A (1.3) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q13813    		 32975518
    146242 6zeh:A (1.3) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q13813    		 32975518
    146243 6zeh:B (1.3) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q13813    		 32975518
    146244 6zeh:B (1.3) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q13813    		 32975518
    146245 6zei:A (1.39) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146246 6zei:A (1.39) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146247 6zei:B (1.39) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146248 6zei:B (1.39) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9UQB8    		 32975518
    146249 6zej:A (1.78) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146250 6zej:A (1.78) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146251 6zej:D (1.78) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146252 6zej:D (1.78) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146253 6zej:F (1.78) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146254 6zej:F (1.78) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146255 6zej:I (1.78) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146256 6zej:I (1.78) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146257 6zej:L (1.78) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146258 6zej:L (1.78) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146259 6zej:O (1.78) BS01 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146260 6zej:O (1.78) BS02 MN 3.1.3.16 GO:0000164 ... P62136
    Q9C0D0    		 32975518
    146261 6zek:A (2.1) BS01 CO 4.1.1.11
    4.1.1.29    		 GO:0004068 ... Q9DBE0 33253877
    146262 6zek:B (2.1) BS01 CO 4.1.1.11
    4.1.1.29    		 GO:0004068 ... Q9DBE0 33253877
    146263 6zek:C (2.1) BS01 CO 4.1.1.11
    4.1.1.29    		 GO:0004068 ... Q9DBE0 33253877
    146264 6zek:D (2.1) BS01 CO 4.1.1.11
    4.1.1.29    		 GO:0004068 ... Q9DBE0 33253877
    146265 6zep:A (1.61) BS01 ZN 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    146266 6zep:A (1.61) BS02 ZN 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    146267 6zeq:A (1.97) BS01 ZN 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    146268 6zeq:A (1.97) BS02 ZN 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    146269 6zet:AAA (2.701) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32850967
    146270 6zeu:AAA (2.004) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32850967
    146271 6zev:AAA (2.4) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32850967
    146272 6zfb:Y (3.9) BS01 ZN 2.7.7.6 GO:0000287 ... P37871 33339827
    146273 6zfb:y (3.9) BS01 ZN 2.7.7.6 GO:0000287 ... P37871 33339827
    146274 6zfe:A (2.35) BS01 CA ? GO:0001533 ... P31725 33359632
    146275 6zfe:A (2.35) BS02 CA ? GO:0001533 ... P31725 33359632
    146276 6zfe:A (2.35) BS03 ZN ? GO:0001533 ... P31725 33359632
    146277 6zfe:A (2.35) BS04 ZN ? GO:0001533 ... P31725 33359632
    146278 6zfj:A (1.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    146279 6zfk:A (1.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    146280 6zfv:A (-1.00) BS01 ZN ? GO:0003700 ... P23769 N/A
    146281 6zga:A (4.6) BS02 ZN ? GO:0000139 ... P15303 33795673
    146282 6zga:B (4.6) BS01 ZN ? GO:0000139 ... P40482 33795673
    146283 6zga:C (4.6) BS02 MG 3.6.5.- GO:0000139 ... P20606 33795673
    146284 6zga:E (4.6) BS01 ZN ? GO:0000139 ... P15303 33795673
    146285 6zga:F (4.6) BS01 ZN ? GO:0000139 ... P40482 33795673
    146286 6zgm:A (1.65) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 32786279
    146287 6zgm:A (1.65) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 32786279
    146288 6zgp:A (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146289 6zgp:B (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146290 6zgp:C (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146291 6zgp:D (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146292 6zgp:E (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146293 6zgp:F (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146294 6zgp:G (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146295 6zgp:H (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146296 6zgp:I (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146297 6zgp:J (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146298 6zgp:K (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146299 6zgp:L (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    146300 6zhf:A (4.0) BS01 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146301 6zhg:A (4.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146302 6zhh:A (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146303 6zhh:B (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146304 6zhh:C (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146305 6zhh:D (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146306 6zhh:E (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146307 6zhh:F (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146308 6zhh:G (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146309 6zhh:H (3.0) BS02 MG 7.2.2.10 GO:0000166 ... Q8Y8Q5 33933469
    146310 6zhj:A (3.26) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 33404527
    146311 6zhj:A (3.26) BS02 CA 3.4.24.27 GO:0004222 ... P00800 33404527
    146312 6zhj:A (3.26) BS03 CA 3.4.24.27 GO:0004222 ... P00800 33404527
    146313 6zhj:A (3.26) BS04 CA 3.4.24.27 GO:0004222 ... P00800 33404527
    146314 6zhj:A (3.26) BS05 CA 3.4.24.27 GO:0004222 ... P00800 33404527
    146315 6zhk:A (1.8) BS01 MG 2.6.1.62 GO:0004015 ... Q58696 N/A
    146316 6zhk:B (1.8) BS01 MG 2.6.1.62 GO:0004015 ... Q58696 N/A
    146317 6zhl:A (1.94) BS02 ZN 3.6.1.- GO:0003924 ... Q9KX08 34749534
    146318 6zhm:A (2.15) BS02 ZN 3.6.1.- GO:0003924 ... Q9KX08 34749534
    146319 6zhp:B (2.053) BS01 MG ? GO:0009279 ... P02931 N/A
    146320 6zhv:A (1.945) BS02 MG ? GO:0009279 ... P02931 N/A
    146321 6zhv:B (1.945) BS01 MG ? GO:0009279 ... P02931 N/A
    146322 6zhv:C (1.945) BS02 MG ? GO:0009279 ... P02931 N/A
    146323 6zhw:L (2.8) BS06 FE ? GO:0009772 ... P06009 33268896
    146324 6zhw:M (2.8) BS05 FE ? GO:0009772 ... P06010 33268896
    146325 6zi4:L (2.8) BS05 FE ? GO:0009772 ... P06009 33268896
    146326 6zi4:M (2.8) BS04 FE ? GO:0009772 ... P06010 33268896
    146327 6zi5:L (2.8) BS04 FE ? GO:0009772 ... P06009 33268896
    146328 6zi5:M (2.8) BS03 FE ? GO:0009772 ... P06010 33268896
    146329 6zi6:L (2.8) BS06 FE ? GO:0009772 ... P06009 33268896
    146330 6zi6:M (2.8) BS05 FE ? GO:0009772 ... P06010 33268896
    146331 6zi9:L (2.8) BS05 FE ? GO:0009772 ... P06009 33268896
    146332 6zi9:M (2.8) BS04 FE ? GO:0009772 ... P06010 33268896
    146333 6zia:L (2.8) BS06 FE ? GO:0009772 ... P06009 33268896
    146334 6zia:M (2.8) BS05 FE ? GO:0009772 ... P06010 33268896
    146335 6zid:L (2.8) BS05 FE ? GO:0009772 ... P06009 33268896
    146336 6zid:M (2.8) BS04 FE ? GO:0009772 ... P06010 33268896
    146337 6zie:A (2.3) BS01 ZN N/A N/A N/A 33771865
    146338 6zie:A (2.3) BS02 ZN N/A N/A N/A 33771865
    146339 6zie:B (2.3) BS01 ZN ? GO:0042981 ... Q07820 33771865
    146340 6zif:A (2.2) BS01 CU1 N/A N/A N/A N/A
    146341 6zif:A (2.2) BS02 CU1 N/A N/A N/A N/A
    146342 6zif:A (2.2) BS03 CU1 N/A N/A N/A N/A
    146343 6zif:A (2.2) BS04 CU1 N/A N/A N/A N/A
    146344 6zif:A (2.2) BS05 CU1 N/A N/A N/A N/A
    146345 6zif:A (2.2) BS06 CU1 N/A N/A N/A N/A
    146346 6zif:A (2.2) BS07 CU1 N/A N/A N/A N/A
    146347 6zif:A (2.2) BS08 CU1 N/A N/A N/A N/A
    146348 6zif:A (2.2) BS09 CU1 N/A N/A N/A N/A
    146349 6zif:A (2.2) BS10 CU1 N/A N/A N/A N/A
    146350 6zif:A (2.2) BS11 CU1 N/A N/A N/A N/A
    146351 6zif:A (2.2) BS12 CU1 N/A N/A N/A N/A
    146352 6zif:A (2.2) BS13 CU1 N/A N/A N/A N/A
    146353 6zif:A (2.2) BS14 CU1 N/A N/A N/A N/A
    146354 6zif:A (2.2) BS15 CU1 N/A N/A N/A N/A
    146355 6zif:A (2.2) BS16 ZN N/A N/A N/A N/A
    146356 6zif:B (2.2) BS01 ZN N/A N/A N/A N/A
    146357 6zif:B (2.2) BS02 CU1 N/A N/A N/A N/A
    146358 6zif:B (2.2) BS03 CU1 N/A N/A N/A N/A
    146359 6zif:B (2.2) BS04 CU1 N/A N/A N/A N/A
    146360 6zif:B (2.2) BS05 CU1 N/A N/A N/A N/A
    146361 6zif:B (2.2) BS06 CU1 N/A N/A N/A N/A
    146362 6zif:B (2.2) BS07 CU1 N/A N/A N/A N/A
    146363 6zif:B (2.2) BS08 CU1 N/A N/A N/A N/A
    146364 6zif:B (2.2) BS09 CU1 N/A N/A N/A N/A
    146365 6zif:B (2.2) BS10 CU1 N/A N/A N/A N/A
    146366 6zif:B (2.2) BS11 CU1 N/A N/A N/A N/A
    146367 6zif:B (2.2) BS12 CU1 N/A N/A N/A N/A
    146368 6zif:B (2.2) BS13 CU1 N/A N/A N/A N/A
    146369 6zif:B (2.2) BS14 CU1 N/A N/A N/A N/A
    146370 6zif:B (2.2) BS15 CU1 N/A N/A N/A N/A
    146371 6zif:C (2.2) BS01 CU1 N/A N/A N/A N/A
    146372 6zif:C (2.2) BS02 CU1 N/A N/A N/A N/A
    146373 6zif:C (2.2) BS03 CU1 N/A N/A N/A N/A
    146374 6zif:C (2.2) BS04 CU1 N/A N/A N/A N/A
    146375 6zif:C (2.2) BS05 CU1 N/A N/A N/A N/A
    146376 6zif:C (2.2) BS06 CU1 N/A N/A N/A N/A
    146377 6zif:C (2.2) BS07 CU1 N/A N/A N/A N/A
    146378 6zif:C (2.2) BS08 CU1 N/A N/A N/A N/A
    146379 6zif:C (2.2) BS09 CU1 N/A N/A N/A N/A
    146380 6zif:C (2.2) BS10 CU1 N/A N/A N/A N/A
    146381 6zif:C (2.2) BS11 CU1 N/A N/A N/A N/A
    146382 6zif:C (2.2) BS12 CU1 N/A N/A N/A N/A
    146383 6zif:C (2.2) BS13 CU1 N/A N/A N/A N/A
    146384 6zif:C (2.2) BS14 CU1 N/A N/A N/A N/A
    146385 6zif:C (2.2) BS15 CU1 N/A N/A N/A N/A
    146386 6zif:C (2.2) BS16 ZN N/A N/A N/A N/A
    146387 6zif:D (2.2) BS01 ZN N/A N/A N/A N/A
    146388 6zif:D (2.2) BS02 CU1 N/A N/A N/A N/A
    146389 6zif:D (2.2) BS03 CU1 N/A N/A N/A N/A
    146390 6zif:D (2.2) BS04 CU1 N/A N/A N/A N/A
    146391 6zif:D (2.2) BS05 CU1 N/A N/A N/A N/A
    146392 6zif:D (2.2) BS06 CU1 N/A N/A N/A N/A
    146393 6zif:D (2.2) BS07 CU1 N/A N/A N/A N/A
    146394 6zif:D (2.2) BS08 CU1 N/A N/A N/A N/A
    146395 6zif:D (2.2) BS09 CU1 N/A N/A N/A N/A
    146396 6zif:D (2.2) BS10 CU1 N/A N/A N/A N/A
    146397 6zif:D (2.2) BS11 CU1 N/A N/A N/A N/A
    146398 6zif:D (2.2) BS12 CU1 N/A N/A N/A N/A
    146399 6zif:D (2.2) BS13 CU1 N/A N/A N/A N/A
    146400 6zif:D (2.2) BS14 CU1 N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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