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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    146001 6z80:A (3.0) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146002 6z80:B (3.0) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146003 6z80:C (3.0) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146004 6z80:D (3.0) BS03 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146005 6z80:E (3.0) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146006 6z80:F (3.0) BS03 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146007 6z80:G (3.0) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146008 6z80:H (3.0) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146009 6z80:I (3.0) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146010 6z80:J (3.0) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146011 6z81:A (2.31) BS01 ZN 2.3.1.234 GO:0000287 ... P05852 33524148
    146012 6z81:B (2.31) BS01 ZN 2.3.1.234 GO:0000287 ... P05852 33524148
    146013 6z85:A (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146014 6z85:B (2.9) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146015 6z85:C (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146016 6z85:D (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146017 6z85:E (2.9) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146018 6z85:F (2.9) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146019 6z85:G (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146020 6z85:H (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146021 6z85:I (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146022 6z85:J (2.9) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146023 6z86:A (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146024 6z86:B (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146025 6z86:C (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146026 6z86:D (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146027 6z86:E (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146028 6z86:F (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146029 6z86:G (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146030 6z86:H (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146031 6z86:I (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146032 6z86:J (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146033 6z86:K (2.206) BS03 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146034 6z86:L (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146035 6z86:M (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146036 6z86:N (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146037 6z86:O (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146038 6z86:P (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146039 6z86:Q (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146040 6z86:R (2.206) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146041 6z86:S (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146042 6z86:T (2.206) BS02 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146043 6z87:A (2.564) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146044 6z87:B (2.564) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146045 6z87:C (2.564) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146046 6z87:D (2.564) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146047 6z87:E (2.564) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146048 6z88:B (2.687) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146049 6z89:C (2.366) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146050 6z89:E (2.366) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 33229582
    146051 6z8i:A (2.62) BS01 MG ? GO:0016020 ... Q8A6W4 33398001
    146052 6z8i:B (2.62) BS01 MG ? N/A Q8A6W3 33398001
    146053 6z8j:B (1.09) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146054 6z8j:B (1.09) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146055 6z8j:D (1.09) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146056 6z8j:D (1.09) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146057 6z8k:A (3.02) BS05 ZN 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A5HC98 32681014
    146058 6z8k:A (3.02) BS06 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A5HC98 32681014
    146059 6z8l:A (1.4) BS08 CA 3.2.1.1 GO:0003824 ... P04746 34163891
    146060 6z8m:B (1.02) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146061 6z8m:B (1.02) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146062 6z8o:B (2.2) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146063 6z8o:B (2.2) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146064 6z8o:D (2.2) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146065 6z8o:D (2.2) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146066 6z8q:A (2.71) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146067 6z8q:A (2.71) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146068 6z8q:A (2.71) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146069 6z8q:B (2.71) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146070 6z8q:B (2.71) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146071 6z8q:B (2.71) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146072 6z8r:A (2.38) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146073 6z8r:B (2.38) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146074 6z8s:A (2.37) BS01 CU1 ? GO:0005515 ... G3XD89 34762655
    146075 6z8s:B (2.37) BS01 CU1 ? GO:0005515 ... G3XD89 34762655
    146076 6z8t:A (2.86) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146077 6z8t:A (2.86) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146078 6z8t:B (2.86) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146079 6z8t:B (2.86) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146080 6z8t:B (2.86) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146081 6z8u:A (2.61) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146082 6z8u:A (2.61) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146083 6z8u:A (2.61) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146084 6z8u:B (2.61) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146085 6z8u:B (2.61) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146086 6z8u:B (2.61) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146087 6z91:A (2.6) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146088 6z91:A (2.6) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146089 6z91:A (2.6) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146090 6z91:B (2.6) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146091 6z91:B (2.6) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146092 6z91:B (2.6) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146093 6z99:A (2.68) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146094 6z99:A (2.68) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146095 6z99:A (2.68) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146096 6z99:B (2.68) BS01 AG ? GO:0005515 ... G3XD89 34762655
    146097 6z99:B (2.68) BS02 AG ? GO:0005515 ... G3XD89 34762655
    146098 6z99:B (2.68) BS03 AG ? GO:0005515 ... G3XD89 34762655
    146099 6z9a:B (3.1) BS03 MG ? N/A Q8A6W3 33398001
    146100 6z9b:A (2.17) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    146101 6z9b:A (2.17) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    146102 6z9b:A (2.17) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    146103 6z9d:A (1.9) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    146104 6z9d:A (1.9) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    146105 6z9d:A (1.9) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    146106 6z9g:B (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146107 6z9g:B (1.76) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146108 6z9g:D (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146109 6z9g:D (1.76) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146110 6z9g:F (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146111 6z9g:F (1.76) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146112 6z9g:H (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146113 6z9g:H (1.76) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146114 6z9k:A (1.5) BS01 MG ? N/A Q04111 32860774
    146115 6z9k:B (1.5) BS01 MG ? N/A Q04111 32860774
    146116 6z9n:A (2.73) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146117 6z9n:B (2.73) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146118 6z9n:C (2.73) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146119 6z9n:D (2.73) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146120 6z9o:B (1.53) BS03 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146121 6z9o:B (1.53) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146122 6z9p:Y (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146123 6z9p:Y (3.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146124 6z9p:Y (3.9) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146125 6z9q:Y (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146126 6z9q:Y (5.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146127 6z9r:Y (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146128 6z9r:Y (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146129 6z9r:Y (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146130 6z9s:Y (4.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146131 6z9s:Y (4.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146132 6z9s:Y (4.4) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146133 6z9t:Y (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146134 6z9t:Y (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146135 6z9t:Y (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33243850
    146136 6z9v:E (2.01) BS01 CA ? GO:0000139 ... P61769 34321228
    146137 6z9y:A (2.95) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146138 6z9y:B (2.95) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146139 6z9y:C (2.95) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146140 6z9y:D (2.95) BS01 CU ? GO:0005515 ... G3XD89 34762655
    146141 6za0:A (1.65) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    146142 6za0:B (1.65) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    146143 6za1:B (1.37) BS03 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146144 6za1:B (1.37) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    146145 6za2:A (3.35) BS01 CA ? GO:0006508 ... B2RGP6 34593635
    146146 6za2:A (3.35) BS02 CA ? GO:0006508 ... B2RGP6 34593635
    146147 6za2:B (3.35) BS01 CA ? GO:0006508 ... B2RGP6 34593635
    146148 6za2:B (3.35) BS02 CA ? GO:0006508 ... B2RGP6 34593635
    146149 6za3:A (2.05) BS03 ZN ? GO:0003677 ... A9CJ36 33313837
    146150 6za3:B (2.05) BS03 ZN ? GO:0003677 ... A9CJ36 33313837
    146151 6za5:B (2.109) BS01 MG 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 32530281
    146152 6za5:D (2.109) BS01 MG 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 32530281
    146153 6za7:A (2.34) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    146154 6za7:B (2.34) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    146155 6za7:C (2.34) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    146156 6za7:D (2.34) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    146157 6zab:A (2.8) BS02 ZN ? GO:0003677 ... A9CJ36 33313837
    146158 6zae:A (1.4) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146159 6zaf:A (1.4001) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146160 6zag:A (1.4001) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146161 6zah:A (1.43) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146162 6zai:A (1.5501) BS03 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146163 6zaj:A (1.5301) BS03 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146164 6zal:A (1.83) BS03 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146165 6zam:A (1.55) BS01 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    146166 6zan:A (1.35) BS01 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    146167 6zao:A (1.66) BS01 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    146168 6zap:A (1.36) BS03 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    146169 6zaq:A (1.6) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 34417180
    146170 6zar:A (1.1) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146171 6zar:A (1.1) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146172 6zas:A (1.3) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146173 6zas:A (1.3) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146174 6zat:A (1.0) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146175 6zat:A (1.0) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146176 6zau:A (1.3) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146177 6zau:A (1.3) BS04 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146178 6zav:A (1.19) BS05 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146179 6zav:A (1.19) BS06 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146180 6zaw:A (1.3) BS04 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146181 6zaw:A (1.3) BS05 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146182 6zax:A (1.48) BS04 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146183 6zax:A (1.48) BS05 CU 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    146184 6zay:A (2.4) BS01 MG ? GO:0003924 ... Q9H082 32960676
    146185 6zay:B (2.4) BS01 MG ? GO:0003924 ... Q9H082 32960676
    146186 6zaz:A (2.69) BS04 MG ? GO:0016020 ... Q8A6W4 33398001
    146187 6zaz:B (2.69) BS07 MG ? N/A Q8A6W3 33398001
    146188 6zba:AAA (1.6) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 33054196
    146189 6zba:BBB (1.6) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 33054196
    146190 6zba:CCC (1.6) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 33054196
    146191 6zba:DDD (1.6) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 33054196
    146192 6zbi:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 33655882
    146193 6zbi:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 33655882
    146194 6zbi:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 33655882
    146195 6zbi:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 33655882
    146196 6zbn:A (2.01) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146197 6zbn:B (2.01) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146198 6zbn:C (2.01) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146199 6zbn:D (2.01) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    146200 6zbn:E (2.01) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33792169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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