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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    145801 6z28:A (2.3) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    145802 6z28:A (2.3) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    145803 6z2a:A (2.456) BS01 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145804 6z2a:A (2.456) BS02 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145805 6z2a:A (2.456) BS03 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145806 6z2a:A (2.456) BS04 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145807 6z2a:A (2.456) BS06 MG 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145808 6z2a:B (2.456) BS01 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145809 6z2a:B (2.456) BS02 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145810 6z2a:B (2.456) BS03 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145811 6z2a:B (2.456) BS04 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 34524082
    145812 6z2b:B (2.138) BS01 MG 3.1.26.8 GO:0043822 ... A0A087LGV4 33541205
    145813 6z2d:A (1.899) BS01 ZN ? GO:0046872 ... B2UR60 32973204
    145814 6z2d:A (1.899) BS02 ZN ? GO:0046872 ... B2UR60 32973204
    145815 6z2j:C (4.0) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 32591534
    145816 6z2j:E (4.0) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 32591534
    145817 6z2k:C (4.5) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 32591534
    145818 6z2k:E (4.5) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 32591534
    145819 6z2k:I (4.5) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 32591534
    145820 6z2k:K (4.5) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 32591534
    145821 6z2o:A (1.649) BS01 ZN ? GO:0046872 ... B2UR60 32973204
    145822 6z2p:A (2.16) BS03 CA ? GO:0046872 ... B2UR60 32973204
    145823 6z2q:A (2.347) BS03 ZN ? GO:0046872 ... B2UR60 32973204
    145824 6z2q:A (2.347) BS04 ZN ? GO:0046872 ... B2UR60 32973204
    145825 6z2s:A (3.2) BS01 MG ? GO:0003774 ... P08799 N/A
    145826 6z2w:E (2.82) BS02 ZN 2.7.11.1 GO:0000077 ... P38111 33169019
    145827 6z2w:E (2.82) BS03 MG 2.7.11.1 GO:0000077 ... P38111 33169019
    145828 6z2w:F (2.82) BS02 ZN 2.7.11.1 GO:0000077 ... P38111 33169019
    145829 6z2w:F (2.82) BS03 MG 2.7.11.1 GO:0000077 ... P38111 33169019
    145830 6z2x:E (3.2) BS02 ZN 2.7.11.1 GO:0000077 ... P38111 33169019
    145831 6z2x:E (3.2) BS03 MG 2.7.11.1 GO:0000077 ... P38111 33169019
    145832 6z2x:E (3.2) BS04 MG 2.7.11.1 GO:0000077 ... P38111 33169019
    145833 6z2x:F (3.2) BS02 ZN 2.7.11.1 GO:0000077 ... P38111 33169019
    145834 6z2x:F (3.2) BS03 MG 2.7.11.1 GO:0000077 ... P38111 33169019
    145835 6z2x:F (3.2) BS04 MG 2.7.11.1 GO:0000077 ... P38111 33169019
    145836 6z3a:E (3.8) BS02 ZN 2.7.11.1 GO:0000077 ... P38111 33169019
    145837 6z3a:F (3.8) BS02 ZN 2.7.11.1 GO:0000077 ... P38111 33169019
    145838 6z3o:AAA (1.74) BS01 MN ? GO:0003676 ... Q9I686 N/A
    145839 6z3o:BBB (1.74) BS01 MN ? GO:0003676 ... Q9I686 N/A
    145840 6z3o:CCC (1.74) BS01 MN ? GO:0003676 ... Q9I686 N/A
    145841 6z3o:DDD (1.74) BS01 MN ? GO:0003676 ... Q9I686 N/A
    145842 6z3r:C (2.97) BS02 MG ? GO:0000184 ... Q9H0W8 32469312
    145843 6z3v:AAA (1.25) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145844 6z3v:AAA (1.25) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145845 6z3v:BBB (1.25) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145846 6z3v:BBB (1.25) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145847 6z42:A (4.0) BS01 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145848 6z42:A (4.0) BS02 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145849 6z42:B (4.0) BS01 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145850 6z42:B (4.0) BS02 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145851 6z42:C (4.0) BS01 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145852 6z42:C (4.0) BS02 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145853 6z42:D (4.0) BS01 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145854 6z42:D (4.0) BS02 ZN 1.1.1.1 GO:0004022 ... E1V3M3 N/A
    145855 6z47:B (6.3) BS01 MG ? GO:0000146 ... G1N5L2 33268888
    145856 6z47:E (6.3) BS01 MG ? GO:0001725 ... G3URE9 33268888
    145857 6z47:F (6.3) BS01 MG ? GO:0001725 ... G3URE9 33268888
    145858 6z4g:AAA (1.45) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145859 6z4g:AAA (1.45) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145860 6z4g:BBB (1.45) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145861 6z4g:BBB (1.45) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145862 6z4h:AAA (1.95) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145863 6z4h:AAA (1.95) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145864 6z4h:BBB (1.95) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145865 6z4h:BBB (1.95) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145866 6z4i:AAA (1.6) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145867 6z4i:AAA (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145868 6z4i:FFF (1.6) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145869 6z4i:FFF (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145870 6z4j:AAA (1.55) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145871 6z4j:AAA (1.55) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145872 6z4j:BBB (1.55) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145873 6z4j:BBB (1.55) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145874 6z4k:AAA (1.45) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145875 6z4k:AAA (1.45) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145876 6z4k:BBB (1.45) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145877 6z4k:BBB (1.45) BS04 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145878 6z4l:AAA (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145879 6z4l:AAA (1.6) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145880 6z4l:BBB (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145881 6z4l:BBB (1.6) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145882 6z4m:AAA (1.55) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145883 6z4m:AAA (1.55) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145884 6z4m:BBB (1.55) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145885 6z4m:BBB (1.55) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145886 6z4o:AAA (1.4) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145887 6z4o:AAA (1.4) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145888 6z4o:BBB (1.4) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145889 6z4o:BBB (1.4) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 32862101
    145890 6z5a:A (1.55) BS01 ZN 2.7.11.1 GO:0004672 ... Q8TF76 N/A
    145891 6z5r:L (2.8) BS08 FE ? GO:0009772 ... O83005 33523887
    145892 6z5r:M (2.8) BS04 FE ? GO:0009772 ... A0A4Z7 33523887
    145893 6z5s:L (2.65) BS04 FE ? GO:0009772 ... O83005 33523887
    145894 6z5s:M (2.65) BS06 FE ? GO:0009772 ... A0A4Z7 33523887
    145895 6z5u:K (3.9) BS02 MG ? GO:0005524 ... A0A4P2WWN2 34188171
    145896 6z5u:L (3.9) BS01 MG ? GO:0005524 ... A0A4P2WWN2 34188171
    145897 6z5y:A (1.01) BS01 CU ? N/A D0N2F7 34385392
    145898 6z5y:B (1.01) BS01 CU ? N/A D0N2F7 34385392
    145899 6z69:B (1.81) BS02 MG ? GO:0016787 ... A0A1M6Y2K1 33342083
    145900 6z6b:EEE (3.961) BS04 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... A5HC98 32681014
    145901 6z6b:PPP (3.961) BS03 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... A5HC98 32681014
    145902 6z6f:A (3.11) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145903 6z6f:B (3.11) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145904 6z6g:A (3.06) BS03 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... A5HC98 32681014
    145905 6z6g:A (3.06) BS04 MG 2.7.7.48
    3.1.-.-
    GO:0000166 ... A5HC98 32681014
    145906 6z6h:A (8.55) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145907 6z6h:B (8.55) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145908 6z6h:F (8.55) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145909 6z6h:G (8.55) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145910 6z6j:Lg (3.4) BS02 ZN ? GO:0002181 ... P87262 32687489
    145911 6z6j:Lj (3.4) BS03 ZN ? GO:0000448 ... P49166 32687489
    145912 6z6j:Lm (3.4) BS02 ZN ? GO:0000027 ... P0CH08 32687489
    145913 6z6j:Lo (3.4) BS02 ZN ? GO:0002181 ... P0CX27 32687489
    145914 6z6j:Lp (3.4) BS02 ZN ? GO:0002181 ... P0CX25 32687489
    145915 6z6j:Sa (3.4) BS02 ZN ? GO:0000054 ... P39939 32687489
    145916 6z6j:Sb (3.4) BS02 ZN ? GO:0000028 ... P35997 32687489
    145917 6z6k:Lg (3.4) BS02 ZN ? GO:0002181 ... P87262 32687489
    145918 6z6k:Lj (3.4) BS03 ZN ? GO:0000448 ... P49166 32687489
    145919 6z6k:Lm (3.4) BS02 ZN ? GO:0000027 ... P0CH08 32687489
    145920 6z6k:Lo (3.4) BS02 ZN ? GO:0002181 ... P0CX27 32687489
    145921 6z6k:Lp (3.4) BS02 ZN ? GO:0002181 ... P0CX25 32687489
    145922 6z6k:Sa (3.4) BS02 ZN ? GO:0000054 ... P39939 32687489
    145923 6z6k:Sb (3.4) BS02 ZN ? GO:0000028 ... P35997 32687489
    145924 6z6k:Sf (3.4) BS02 ZN ? GO:0000028 ... P05759 32687489
    145925 6z6l:LA (3.0) BS02 MG ? GO:0002181 ... P62917 32687489
    145926 6z6l:Le (3.0) BS02 MG ? GO:0002181 ... P62910 32687489
    145927 6z6l:Lg (3.0) BS02 MG ? GO:0002181 ... P49207 32687489
    145928 6z6l:Lg (3.0) BS03 ZN ? GO:0002181 ... P49207 32687489
    145929 6z6l:Lj (3.0) BS03 ZN ? GO:0002181 ... P61927 32687489
    145930 6z6l:Lm (3.0) BS02 ZN ? GO:0002181 ... P62987 32687489
    145931 6z6l:Lp (3.0) BS02 ZN ? GO:0002181 ... P61513 32687489
    145932 6z6l:Sa (3.0) BS02 ZN ? GO:0002181 ... P62854 32687489
    145933 6z6l:Sf (3.0) BS02 ZN ? GO:0002181 ... P62979 32687489
    145934 6z6m:LA (3.1) BS02 MG ? GO:0002181 ... P62917 32687489
    145935 6z6m:LT (3.1) BS03 MG ? GO:0002181 ... P46778 32687489
    145936 6z6m:Le (3.1) BS02 MG ? GO:0002181 ... P62910 32687489
    145937 6z6m:Lg (3.1) BS02 MG ? GO:0002181 ... P49207 32687489
    145938 6z6m:Lj (3.1) BS03 ZN ? GO:0002181 ... P61927 32687489
    145939 6z6m:Lm (3.1) BS02 ZN ? GO:0002181 ... P62987 32687489
    145940 6z6m:Lp (3.1) BS02 ZN ? GO:0002181 ... P61513 32687489
    145941 6z6m:Sa (3.1) BS02 ZN ? GO:0002181 ... P62854 32687489
    145942 6z6n:LA (2.9) BS02 MG ? GO:0002181 ... P62917 32687489
    145943 6z6n:Le (2.9) BS02 MG ? GO:0002181 ... P62910 32687489
    145944 6z6n:Lg (2.9) BS02 MG ? GO:0002181 ... P49207 32687489
    145945 6z6n:Lg (2.9) BS03 ZN ? GO:0002181 ... P49207 32687489
    145946 6z6n:Lj (2.9) BS03 ZN ? GO:0002181 ... P61927 32687489
    145947 6z6n:Lm (2.9) BS02 ZN ? GO:0002181 ... P62987 32687489
    145948 6z6n:Lo (2.9) BS03 ZN ? GO:0002181 ... P83881 32687489
    145949 6z6n:Lp (2.9) BS02 ZN ? GO:0002181 ... P61513 32687489
    145950 6z6n:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 32687489
    145951 6z6n:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 32687489
    145952 6z6n:Sf (2.9) BS02 ZN ? GO:0002181 ... P62979 32687489
    145953 6z6o:A (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145954 6z6o:B (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145955 6z6o:E (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145956 6z6o:F (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145957 6z6o:I (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145958 6z6o:J (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145959 6z6o:M (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145960 6z6o:N (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145961 6z6p:K (4.43) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145962 6z6p:L (4.43) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    145963 6z6q:A (1.81) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 34163896
    145964 6z6r:A (2.13) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 34163896
    145965 6z6s:DDD (3.153) BS01 ZN 2.7.7.80
    2.8.1.11
    GO:0008641 ... G0SC54 32901956
    145966 6z6z:A (1.78) BS01 CA ? GO:0005506 ... P80188 N/A
    145967 6z74:A (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    145968 6z74:B (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    145969 6z74:C (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    145970 6z74:D (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    145971 6z7o:A (2.33) BS01 ZN ? GO:0000806 ... Q8IFW4 33708404
    145972 6z7p:A (4.8) BS05 CA ? GO:0005509 ... P35828 31883796
    145973 6z7p:A (4.8) BS06 CA ? GO:0005509 ... P35828 31883796
    145974 6z7p:A (4.8) BS07 CA ? GO:0005509 ... P35828 31883796
    145975 6z7p:A (4.8) BS08 CA ? GO:0005509 ... P35828 31883796
    145976 6z7p:A (4.8) BS09 CA ? GO:0005509 ... P35828 31883796
    145977 6z7p:A (4.8) BS10 CA ? GO:0005509 ... P35828 31883796
    145978 6z7p:A (4.8) BS11 CA ? GO:0005509 ... P35828 31883796
    145979 6z7p:A (4.8) BS12 CA ? GO:0005509 ... P35828 31883796
    145980 6z7p:A (4.8) BS13 CA ? GO:0005509 ... P35828 31883796
    145981 6z7p:A (4.8) BS14 CA ? GO:0005509 ... P35828 31883796
    145982 6z7p:A (4.8) BS15 CA ? GO:0005509 ... P35828 31883796
    145983 6z7p:A (4.8) BS16 CA ? GO:0005509 ... P35828 31883796
    145984 6z7p:A (4.8) BS17 CA ? GO:0005509 ... P35828 31883796
    145985 6z7p:A (4.8) BS18 CA ? GO:0005509 ... P35828 31883796
    145986 6z7p:A (4.8) BS19 CA ? GO:0005509 ... P35828 31883796
    145987 6z7p:A (4.8) BS20 CA ? GO:0005509 ... P35828 31883796
    145988 6z7p:A (4.8) BS21 CA ? GO:0005509 ... P35828 31883796
    145989 6z7p:A (4.8) BS22 CA ? GO:0005509 ... P35828 31883796
    145990 6z7p:A (4.8) BS23 CA ? GO:0005509 ... P35828 31883796
    145991 6z7p:A (4.8) BS24 CA ? GO:0005509 ... P35828 31883796
    145992 6z7p:A (4.8) BS25 CA ? GO:0005509 ... P35828 31883796
    145993 6z7p:A (4.8) BS26 CA ? GO:0005509 ... P35828 31883796
    145994 6z7r:B (1.77) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    145995 6z7r:B (1.77) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    145996 6z7r:D (1.77) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    145997 6z7r:D (1.77) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    145998 6z7t:A (1.88) BS01 MG ? GO:0003774 ... P08799 33049993
    145999 6z7t:B (1.88) BS01 MG ? GO:0003774 ... P08799 33049993
    146000 6z7t:B (1.88) BS02 MG ? GO:0003774 ... P08799 33049993

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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