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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    145401 6ymx:a (3.17) BS01 CU 7.1.1.9 GO:0004129 ... P00401 33016568
    145402 6ymx:d (3.17) BS01 ZN ? GO:0005740 ... P04037 33016568
    145403 6ymy:a (3.41) BS01 CU 7.1.1.9 GO:0004129 ... P00401 33016568
    145404 6ymy:d (3.41) BS01 ZN ? GO:0005740 ... P04037 33016568
    145405 6yn4:A (1.82) BS01 ZN 3.2.1.14 GO:0005975 ... P48827 N/A
    145406 6yns:A (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145407 6yns:A (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145408 6yns:A (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    145409 6yns:A (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    145410 6yns:B (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145411 6yns:B (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    145412 6yns:B (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    145413 6yns:B (3.94) BS08 CA ? GO:0000086 ... P0DP23 33977052
    145414 6yns:C (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145415 6yns:C (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145416 6yns:D (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145417 6yns:D (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145418 6yns:E (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145419 6yns:E (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    145420 6yns:F (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145421 6yns:F (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145422 6yns:G (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145423 6yns:G (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145424 6yns:H (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145425 6yns:H (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    145426 6yns:I (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145427 6yns:I (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145428 6yns:J (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145429 6yns:J (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145430 6yns:K (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145431 6yns:K (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145432 6yns:K (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    145433 6yns:L (3.94) BS03 CA ? GO:0000086 ... P0DP23 33977052
    145434 6ynu:A (3.12) BS02 CA ? GO:0000086 ... P0DP23 33977052
    145435 6ynu:A (3.12) BS03 CA ? GO:0000086 ... P0DP23 33977052
    145436 6ynu:A (3.12) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145437 6ynu:A (3.12) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145438 6ynu:A (3.12) BS06 CA ? GO:0000086 ... P0DP23 33977052
    145439 6ynu:C (3.12) BS02 CA ? GO:0000086 ... P0DP23 33977052
    145440 6ynu:C (3.12) BS03 CA ? GO:0000086 ... P0DP23 33977052
    145441 6ynu:C (3.12) BS04 CA ? GO:0000086 ... P0DP23 33977052
    145442 6ynu:C (3.12) BS05 CA ? GO:0000086 ... P0DP23 33977052
    145443 6ynx:G (2.5) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145444 6ynx:g (2.5) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145445 6yny:D1 (2.7) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145446 6yny:D2 (2.7) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145447 6yny:G (2.7) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145448 6yny:g (2.7) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145449 6ynz:D1 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145450 6ynz:D2 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145451 6ynz:D4 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145452 6ynz:D5 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145453 6ynz:E5 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145454 6ynz:G (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145455 6ynz:G3 (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145456 6ynz:g (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145457 6ynz:g3 (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    145458 6yo0:D1 (2.9) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    145459 6yo2:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    145460 6yo3:A (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145461 6yo3:B (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145462 6yo3:C (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145463 6yo3:D (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145464 6yo4:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    145465 6yo5:AAA (1.5) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    145466 6yo5:AAA (1.5) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    145467 6yo5:AAA (1.5) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    145468 6yo5:AAA (1.5) BS04 CU ? GO:0005507 ... B5HSR1 N/A
    145469 6yo5:BBB (1.5) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    145470 6yo5:BBB (1.5) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    145471 6yo5:BBB (1.5) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    145472 6yo5:BBB (1.5) BS04 CU ? GO:0005507 ... B5HSR1 N/A
    145473 6yo5:CCC (1.5) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    145474 6yo5:CCC (1.5) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    145475 6yo5:CCC (1.5) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    145476 6yo5:CCC (1.5) BS04 CU ? GO:0005507 ... B5HSR1 N/A
    145477 6yo5:CCC (1.5) BS05 CU ? GO:0005507 ... B5HSR1 N/A
    145478 6yo7:A (1.17) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    145479 6yoh:A (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145480 6yoh:B (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145481 6yoh:C (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145482 6yoh:D (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    145483 6yoi:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    145484 6yok:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    145485 6yol:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    145486 6yom:A (3.25) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    145487 6yom:A (3.25) BS02 MN 3.1.5.- N/A Q9Y3Z3 32576829
    145488 6yom:B (3.25) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    145489 6yom:B (3.25) BS05 MN 3.1.5.- N/A Q9Y3Z3 32576829
    145490 6yoo:A (1.06) BS02 ZN ? GO:0000045 ... Q9H0R8 N/A
    145491 6yox:A (2.05) BS03 CA ? GO:0000122 ... P31947 32816380
    145492 6yp4:A (1.94541) BS01 MG ? GO:0016462 ... E1AQY1 33075486
    145493 6yp4:A (1.94541) BS02 MG ? GO:0016462 ... E1AQY1 33075486
    145494 6yp7:A (3.8) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 33207833
    145495 6yp7:a (3.8) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 33207833
    145496 6ype:A (1.45) BS01 CA ? N/A Q15818 32855309
    145497 6ype:A (1.45) BS02 CA ? N/A Q15818 32855309
    145498 6ype:B (1.45) BS01 CA ? N/A Q15818 32855309
    145499 6ype:B (1.45) BS02 CA ? N/A Q15818 32855309
    145500 6ypi:A (1.479) BS01 ZN N/A N/A N/A 33526894
    145501 6ypn:B (1.58) BS03 MG 2.7.11.1 GO:0004672 ... P68400 33119282
    145502 6ypv:A (2.1) BS01 FE 1.14.11.33 GO:0005515 ... P05050 32939282
    145503 6ypw:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34283610
    145504 6yq4:A (2.399) BS01 MG ? GO:0046872 ... Q8RFS1 33336898
    145505 6yq4:B (2.399) BS02 MG ? GO:0046872 ... Q8RFS1 33336898
    145506 6yq4:C (2.399) BS01 MG ? GO:0046872 ... Q8RFS1 33336898
    145507 6yq7:A (1.58) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33497208
    145508 6yq7:B (1.58) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33497208
    145509 6yq9:AAA (1.55) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145510 6yq9:BBB (1.55) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145511 6yqa:AAA (1.67) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145512 6yqa:BBB (1.67) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145513 6yqb:AAA (1.5) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145514 6yqb:BBB (1.5) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145515 6yqc:AAA (1.35) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145516 6yqc:BBB (1.35) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    145517 6yqh:AAA (1.41) BS02 ZN ? GO:0005975 ... Q8AAW3 33528085
    145518 6yqt:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    145519 6yqu:A (1.478) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    145520 6yra:B (4.0) BS01 ZN 3.5.2.- GO:0003824 ... A0A2W0FH34 33826169
    145521 6yra:D (4.0) BS01 ZN 3.5.2.- GO:0003824 ... A0A2W0FH34 33826169
    145522 6yri:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 33000794
    145523 6yrp:A (1.95) BS01 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 32937203
    145524 6yrp:A (1.95) BS02 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 32937203
    145525 6yry:A (1.82) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145526 6ys5:n (3.0) BS02 MG ? GO:0000049 ... D0CD19 32857965
    145527 6ysi:b (2.5) BS02 ZN ? GO:0003735 ... D0CD18 32857965
    145528 6yso:A (3.13) BS03 MG 7.2.2.10 GO:0000166 ... P04191 33209320
    145529 6yso:B (3.13) BS03 MG 7.2.2.10 GO:0000166 ... P04191 33209320
    145530 6ysr:4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    145531 6ysr:6 (3.1) BS02 ZN N/A GO:0003735 ... N/A 32796827
    145532 6ysr:g (3.1) BS02 MG N/A GO:0003723 ... N/A 32796827
    145533 6yss:4 (2.6) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    145534 6yss:6 (2.6) BS03 ZN N/A GO:0003735 ... N/A 32796827
    145535 6yss:C (2.6) BS03 MG ? GO:0000027 ... P60422 32796827
    145536 6yss:C (2.6) BS04 MG ? GO:0000027 ... P60422 32796827
    145537 6yss:M (2.6) BS03 MG ? GO:0000027 ... P0ADY7 32796827
    145538 6yss:m (2.6) BS03 MG ? GO:0000028 ... C3SR52 32796827
    145539 6yss:n (2.6) BS02 MG N/A GO:0003735 ... N/A 32796827
    145540 6yst:4 (3.2) BS02 MG ? GO:0002181 ... P0A7Q6 32796827
    145541 6yst:4 (3.2) BS03 ZN ? GO:0002181 ... P0A7Q6 32796827
    145542 6yst:6 (3.2) BS02 MG N/A GO:0003735 ... N/A 32796827
    145543 6yst:6 (3.2) BS03 ZN N/A GO:0003735 ... N/A 32796827
    145544 6ysu:4 (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    145545 6ysu:C (3.7) BS03 MG ? GO:0000027 ... P60422 32796827
    145546 6ysu:m (3.7) BS03 MG ? GO:0000028 ... C3SR52 32796827
    145547 6ysy:A (3.246) BS02 MG ? GO:0000146 ... Q28641 33035452
    145548 6yt3:A (2.85) BS02 MG ? GO:0005737 ... P84308 34587504
    145549 6ytf:n (3.0) BS02 MG ? GO:0000049 ... D0CD19 32857965
    145550 6yu8:A (1.841) BS01 MG 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    N/A Q5XX01 33503246
    145551 6yu8:A (1.841) BS02 MG 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    N/A Q5XX01 33503246
    145552 6yua:C (3.16) BS04 MG N/A GO:0003824 ... N/A 33080205
    145553 6yub:A (2.195) BS01 ZN 2.7.7.80
    2.8.1.11
    GO:0002098 ... G0SC54 32901956
    145554 6yub:B (2.195) BS01 ZN 2.7.7.80
    2.8.1.11
    GO:0008641 ... G0SC54 32901956
    145555 6yuc:D (3.15) BS01 ZN 2.7.7.80
    2.8.1.11
    GO:0008641 ... G0SC54 32901956
    145556 6yuh:A (1.93) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 33400854
    145557 6yuh:A (1.93) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 33400854
    145558 6yuh:A (1.93) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 33400854
    145559 6yup:A (2.9) BS01 CA ? GO:0005515 ... Q07837 32817565
    145560 6yup:C (2.9) BS01 CA ? GO:0005515 ... Q07837 32817565
    145561 6yuz:A (2.8) BS01 CA ? GO:0005515 ... Q07837 32817565
    145562 6yuz:C (2.8) BS01 CA ? GO:0005515 ... Q07837 32817565
    145563 6yvc:A (1.85) BS01 MN ? GO:0008893 ... Q9I686 33448498
    145564 6yvc:B (1.85) BS01 MN ? GO:0008893 ... Q9I686 33448498
    145565 6yvc:C (1.85) BS01 MN ? GO:0008893 ... Q9I686 33448498
    145566 6yvc:D (1.85) BS01 MN ? GO:0008893 ... Q9I686 33448498
    145567 6yvt:A (2.847) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 22639232
    145568 6yvt:B (2.847) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 22639232
    145569 6yvt:C (2.847) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 22639232
    145570 6yvt:D (2.847) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 22639232
    145571 6yvt:E (2.847) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 22639232
    145572 6yvt:F (2.847) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 22639232
    145573 6yvw:A (1.97) BS01 FE 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145574 6yvx:A (1.8) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145575 6yvz:A (1.91) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145576 6yw0:A (2.2) BS01 FE 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145577 6yw1:A (1.46) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145578 6yw2:A (2.14) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145579 6yw3:A (2.279) BS03 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145580 6yw4:A (1.528) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    145581 6yw5:BB (2.85) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    145582 6yw5:XX (2.85) BS03 MG ? GO:0003735 ... Q7SD06 33056988
    145583 6ywe:0 (2.99) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    145584 6ywe:BB (2.99) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    145585 6ywe:S (2.99) BS02 MG N/A GO:0003735 ... N/A 33056988
    145586 6ywe:W (2.99) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    145587 6ywk:C (2.2) BS01 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    145588 6ywk:E (2.2) BS01 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    145589 6ywl:C (2.5) BS02 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    145590 6ywl:E (2.5) BS02 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    145591 6ywm:B (2.16) BS01 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    145592 6ywn:A (1.45) BS01 CA ? N/A G2R014 32785623
    145593 6yws:0 (2.74) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    145594 6yws:K (2.74) BS02 MG ? GO:0003735 ... F5HIJ5 33056988
    145595 6yws:W (2.74) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    145596 6ywv:0 (3.03) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    145597 6ywv:K (3.03) BS02 MG ? GO:0003735 ... F5HIJ5 33056988
    145598 6ywv:W (3.03) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    145599 6ywx:0 (3.1) BS02 MG ? GO:0003735 ... Q7S4E7 33056988
    145600 6ywx:0 (3.1) BS03 ZN ? GO:0003735 ... Q7S4E7 33056988

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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