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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    145201 6yei:F (2.02) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    145202 6yem:A (2.5) BS01 MN 3.1.-.- GO:0003723 ... C3W5X6 32883638
    145203 6yem:A (2.5) BS02 MN 3.1.-.- GO:0003723 ... C3W5X6 32883638
    145204 6yes:A (4.1) BS01 ZN ? GO:0046872 ... M9U4Y8 33239638
    145205 6yet:A (-1.00) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    145206 6yeu:A (-1.00) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    145207 6yez:3 (2.7) BS02 CA ? GO:0009765 ... Q32904 33020607
    145208 6yez:B (2.7) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    145209 6yez:P (2.7) BS01 CU ? GO:0005507 ... P16002 33020607
    145210 6yf4:A (1.77) BS07 MG 1.12.7.2 GO:0005506 ... P29166 32796105
    145211 6yf6:A (2.0) BS02 CA ? N/A A0A0H3CQ33 N/A
    145212 6yf6:B (2.0) BS02 CA ? N/A A0A0H3CQ33 N/A
    145213 6yfk:AC (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    145214 6yfk:AO (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    145215 6yfk:AU (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    145216 6yfk:BG (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    145217 6yfm:AA (2.762) BS01 ZN N/A N/A N/A 32917600
    145218 6yfm:AB (2.762) BS01 ZN N/A N/A N/A 32917600
    145219 6yfm:AC (2.762) BS01 ZN N/A N/A N/A 32917600
    145220 6yfm:AD (2.762) BS01 ZN N/A N/A N/A 32917600
    145221 6yfm:AE (2.762) BS01 ZN N/A N/A N/A 32917600
    145222 6yfm:AF (2.762) BS01 ZN N/A N/A N/A 32917600
    145223 6yfm:AG (2.762) BS01 ZN N/A N/A N/A 32917600
    145224 6yfm:AH (2.762) BS01 ZN N/A N/A N/A 32917600
    145225 6yfm:AI (2.762) BS01 ZN N/A N/A N/A 32917600
    145226 6yfm:AJ (2.762) BS01 ZN N/A N/A N/A 32917600
    145227 6yfm:AK (2.762) BS01 ZN N/A N/A N/A 32917600
    145228 6yfm:AL (2.762) BS01 ZN N/A N/A N/A 32917600
    145229 6yfm:AM (2.762) BS01 ZN N/A N/A N/A 32917600
    145230 6yfm:AN (2.762) BS01 ZN N/A N/A N/A 32917600
    145231 6yfm:AO (2.762) BS01 ZN N/A N/A N/A 32917600
    145232 6yfm:AP (2.762) BS01 ZN N/A N/A N/A 32917600
    145233 6yfm:AQ (2.762) BS01 ZN N/A N/A N/A 32917600
    145234 6yfm:AR (2.762) BS01 ZN N/A N/A N/A 32917600
    145235 6yfm:AS (2.762) BS01 ZN N/A N/A N/A 32917600
    145236 6yfm:AT (2.762) BS01 ZN N/A N/A N/A 32917600
    145237 6yfm:AU (2.762) BS01 ZN N/A N/A N/A 32917600
    145238 6yfm:AV (2.762) BS01 ZN N/A N/A N/A 32917600
    145239 6yfm:AW (2.762) BS01 ZN N/A N/A N/A 32917600
    145240 6yfm:AX (2.762) BS01 ZN N/A N/A N/A 32917600
    145241 6yfm:AY (2.762) BS01 ZN N/A N/A N/A 32917600
    145242 6yfm:AZ (2.762) BS01 ZN N/A N/A N/A 32917600
    145243 6yfm:BA (2.762) BS01 ZN N/A N/A N/A 32917600
    145244 6yfm:BB (2.762) BS01 ZN N/A N/A N/A 32917600
    145245 6yfm:BC (2.762) BS01 ZN N/A N/A N/A 32917600
    145246 6yfm:BD (2.762) BS01 ZN N/A N/A N/A 32917600
    145247 6yfm:BE (2.762) BS01 ZN N/A N/A N/A 32917600
    145248 6yfm:BF (2.762) BS01 ZN N/A N/A N/A 32917600
    145249 6yfm:BG (2.762) BS01 ZN N/A N/A N/A 32917600
    145250 6yfm:BH (2.762) BS01 ZN N/A N/A N/A 32917600
    145251 6yfm:BI (2.762) BS01 ZN N/A N/A N/A 32917600
    145252 6yfm:BJ (2.762) BS01 ZN N/A N/A N/A 32917600
    145253 6yfm:BK (2.762) BS01 ZN N/A N/A N/A 32917600
    145254 6yfm:BL (2.762) BS01 ZN N/A N/A N/A 32917600
    145255 6yfm:BM (2.762) BS01 ZN N/A N/A N/A 32917600
    145256 6yfm:BN (2.762) BS01 ZN N/A N/A N/A 32917600
    145257 6yfm:BO (2.762) BS01 ZN N/A N/A N/A 32917600
    145258 6yfm:BP (2.762) BS01 ZN N/A N/A N/A 32917600
    145259 6yfm:BQ (2.762) BS01 ZN N/A N/A N/A 32917600
    145260 6yfm:BR (2.762) BS01 ZN N/A N/A N/A 32917600
    145261 6yfm:BS (2.762) BS01 ZN N/A N/A N/A 32917600
    145262 6yfv:B (2.75) BS01 ZN ? N/A G0S1V1 34103492
    145263 6yfv:D (2.75) BS01 ZN ? N/A G0S1V1 34103492
    145264 6yfw:A (1.26) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145265 6yfx:A (1.38) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145266 6yge:A (1.6) BS01 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    145267 6yge:B (1.6) BS01 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    145268 6ygg:A (1.85) BS02 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    145269 6ygg:B (1.85) BS02 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    145270 6ygk:A (1.4) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145271 6ygl:A (1.48) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145272 6ygm:A (1.23) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145273 6ygo:A (1.26) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145274 6ygp:A (1.33) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145275 6ygq:A (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    145276 6ygq:B (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    145277 6ygq:C (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    145278 6ygq:D (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    145279 6ygr:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145280 6ygs:A (1.4) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145281 6ygu:B (1.99) BS01 ZN ? N/A G0S1V1 34103492
    145282 6ygu:D (1.99) BS01 ZN ? N/A G0S1V1 34103492
    145283 6ygv:A (1.63) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145284 6ygw:A (1.16) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145285 6ygx:A (1.35) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145286 6ygy:A (1.52) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145287 6ygz:A (1.86) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145288 6yh0:AAA (1.56) BS08 CA ? GO:0046872 ... Q8X123 34235469
    145289 6yh0:AAA (1.56) BS09 CA ? GO:0046872 ... Q8X123 34235469
    145290 6yh1:A (1.55) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145291 6yh2:A (1.19) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145292 6yh3:A (1.49) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145293 6yh4:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145294 6yh5:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145295 6yh6:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145296 6yh7:A (1.12) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145297 6yh8:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145298 6yh9:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145299 6yha:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145300 6yhb:A (1.65) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145301 6yhc:A (1.28) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33945229
    145302 6yhd:A (1.25) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145303 6yhe:A (1.54) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145304 6yhm:A (1.13) BS01 MG ? N/A A0A0N9JNY6 33410511
    145305 6yhn:A (1.8) BS02 MG ? N/A A0A0N9JNY6 33410511
    145306 6yhq:L (1.89) BS01 ZN N/A N/A N/A N/A
    145307 6yhr:A (2.2) BS02 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 33199508
    145308 6yhr:A (2.2) BS03 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 33199508
    145309 6yhs:b (2.7) BS02 ZN ? GO:0003735 ... D0CD18 32857965
    145310 6yi1:A (1.92) BS03 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145311 6yi1:A (1.92) BS04 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145312 6yi1:A (1.92) BS05 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145313 6yi1:A (1.92) BS06 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145314 6yi1:B (1.92) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145315 6yi1:B (1.92) BS03 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145316 6yi1:B (1.92) BS04 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145317 6yi1:B (1.92) BS05 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145318 6yi4:AAA (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 N/A
    145319 6yi4:AAA (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 N/A
    145320 6yi4:BBB (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 N/A
    145321 6yi4:BBB (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 N/A
    145322 6yi4:CCC (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 N/A
    145323 6yi4:CCC (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 N/A
    145324 6yi6:E (1.44) BS01 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    145325 6yi6:E (1.44) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145326 6yi6:E (1.44) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145327 6yi6:E (1.44) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145328 6yi6:E (1.44) BS05 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145329 6yia:A (1.3) BS02 MG ? GO:0000122 ... P31947 N/A
    145330 6yia:A (1.3) BS03 MG ? GO:0000122 ... P31947 N/A
    145331 6yie:A (3.49) BS01 ZN ? GO:0000228 ... O15392 32356865
    145332 6yie:D (3.49) BS01 ZN ? GO:0000228 ... O15392 32356865
    145333 6yif:A (1.81) BS02 ZN ? GO:0000228 ... O15392 32356865
    145334 6yig:A (1.55) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    145335 6yih:A (2.55) BS02 ZN ? GO:0000228 ... O15392 32356865
    145336 6yii:A (1.44) BS02 CA 4.6.1.26 GO:0000166 ... P0DV40 32454240
    145337 6yii:A (1.44) BS03 MG 4.6.1.26 GO:0000166 ... P0DV40 32454240
    145338 6yiq:A (1.58) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145339 6yiq:B (1.58) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    145340 6yis:A (1.19) BS01 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    145341 6yit:A (1.25) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    145342 6yiu:A (1.36) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    145343 6yiw:A (0.97) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    145344 6yiy:A (1.11) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    145345 6yj1:A (2.3) BS01 ZN ? N/A Q4ZD58 N/A
    145346 6yj1:B (2.3) BS01 ZN ? N/A Q4ZD58 N/A
    145347 6yj3:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32955786
    145348 6yj4:R (2.7) BS01 ZN ? GO:0005739 ... Q6C8J9 32747785
    145349 6yjh:A (1.61) BS01 MN 4.2.1.19 GO:0000105 ... P9WML9 N/A
    145350 6yjh:A (1.61) BS02 MN 4.2.1.19 GO:0000105 ... P9WML9 N/A
    145351 6yjm:A (2.25) BS01 ZN 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145352 6yjm:A (2.25) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145353 6yjm:A (2.25) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145354 6yjm:A (2.25) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145355 6yjm:B (2.25) BS01 ZN 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145356 6yjm:B (2.25) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145357 6yjm:B (2.25) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145358 6yjm:B (2.25) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    145359 6yjn:A (2.7) BS01 ZN 4.2.1.1 GO:0004089 ... Q63Y17 32408533
    145360 6yjy:A (1.67) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145361 6yjy:B (1.67) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 32551535
    145362 6ykc:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32955786
    145363 6ykh:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32955786
    145364 6ykk:A (2.236) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145365 6ykl:A (2.27) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145366 6ykn:A (2.63) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145367 6yko:A (2.21) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145368 6ykq:A (1.94) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145369 6yks:A (1.97) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145370 6ykt:A (2.32) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145371 6yku:A (2.14) BS01 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145372 6ykv:A (2.43) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145373 6ykw:A (2.46) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145374 6ykx:A (2.41) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33248851
    145375 6yl7:A (3.17) BS01 ZN 4.2.1.1 GO:0004089 ... A0A069AXA0 32408533
    145376 6ylg:I (3.0) BS02 ZN ? GO:0000055 ... Q08004 32668200
    145377 6ylg:j (3.0) BS03 ZN ? GO:0000448 ... P49166 32668200
    145378 6ylg:p (3.0) BS02 ZN ? GO:0002181 ... P0CX25 32668200
    145379 6ylg:u (3.0) BS02 ZN ? GO:0001671 ... Q07915 32668200
    145380 6ylh:I (3.1) BS02 ZN ? GO:0000055 ... Q08004 32668200
    145381 6ylh:j (3.1) BS03 ZN ? GO:0000448 ... P49166 32668200
    145382 6ylh:p (3.1) BS02 ZN ? GO:0002181 ... P0CX25 32668200
    145383 6ylh:u (3.1) BS02 ZN ? GO:0001671 ... Q07915 32668200
    145384 6ylj:A (1.75) BS01 ZN 3.2.1.14 GO:0005975 ... P48827 N/A
    145385 6yly:j (3.8) BS03 ZN ? GO:0000448 ... P49166 32668200
    145386 6yly:p (3.8) BS02 ZN ? GO:0002181 ... P0CX25 32668200
    145387 6yly:u (3.8) BS02 ZN ? GO:0001671 ... Q07915 32668200
    145388 6yma:A (2.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32737395
    145389 6ymb:A (2.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32737395
    145390 6ymr:E (1.6) BS01 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    145391 6ymr:E (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145392 6ymr:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145393 6ymr:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145394 6ymr:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145395 6yms:E (1.32) BS01 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145396 6yms:E (1.32) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145397 6yms:E (1.32) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145398 6yms:E (1.32) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    145399 6yms:E (1.32) BS05 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    145400 6ymw:A (3.71) BS05 MG 2.7.7.6 GO:0000002 ... P13433 33278362
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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