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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144801 6y0v:A (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    144802 6y0v:B (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    144803 6y0v:B (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    144804 6y0v:C (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    144805 6y0v:C (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    144806 6y0v:D (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    144807 6y0v:D (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    144808 6y0w:A (2.06) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    144809 6y0w:A (2.06) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    144810 6y0w:B (2.06) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    144811 6y0w:B (2.06) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    144812 6y0z:A (1.21) BS01 MG ? GO:0000166 ... Q84EX5 N/A
    144813 6y10:A (1.22) BS01 MG ? GO:0000166 ... Q84EX5 N/A
    144814 6y12:A (1.7) BS01 FE 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    144815 6y1d:A (1.38) BS02 MG ? GO:0000122 ... P31947 33196173
    144816 6y1j:A (1.127) BS02 CA ? GO:0000122 ... P31947 32201828
    144817 6y1j:A (1.127) BS03 CA ? GO:0000122 ... P31947 32201828
    144818 6y22:A (2.069) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144819 6y22:A (2.069) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144820 6y2c:A (2.0) BS01 ZN ? GO:0003676 ... Q96AE4 32778776
    144821 6y2c:B (2.0) BS01 ZN ? GO:0003676 ... Q96AE4 32778776
    144822 6y2l:LA (3.0) BS03 MG ? GO:0002181 ... P62917 32268098
    144823 6y2l:LA (3.0) BS04 MG ? GO:0002181 ... P62917 32268098
    144824 6y2l:Lg (3.0) BS02 ZN ? GO:0002181 ... P49207 32268098
    144825 6y2l:Lj (3.0) BS03 ZN ? GO:0002181 ... P61927 32268098
    144826 6y2l:Lm (3.0) BS02 ZN ? GO:0002181 ... P62987 32268098
    144827 6y2l:Lo (3.0) BS03 ZN ? GO:0002181 ... P83881 32268098
    144828 6y2l:Lp (3.0) BS02 ZN ? GO:0002181 ... P61513 32268098
    144829 6y2l:Sa (3.0) BS02 ZN ? GO:0002181 ... P62854 32268098
    144830 6y2l:Sd (3.0) BS02 ZN ? GO:0002181 ... P62273 32268098
    144831 6y2n:A (2.4) BS01 MN3 1.17.4.1 GO:0004748 ... A4F980 32876583
    144832 6y2n:A (2.4) BS02 FE 1.17.4.1 GO:0004748 ... A4F980 32876583
    144833 6y2x:A (1.77) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144834 6y2x:A (1.77) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144835 6y2x:B (1.77) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144836 6y2x:B (1.77) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144837 6y2z:A (2.15) BS01 MG 3.6.5.4 GO:0003924 ... P61011 33053321
    144838 6y3j:A (2.6) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144839 6y3j:A (2.6) BS03 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    144840 6y3m:A (1.5) BS02 MG ? GO:0000122 ... P31947 33006579
    144841 6y3o:A (1.5) BS02 MG ? GO:0000122 ... P31947 33006579
    144842 6y3o:A (1.5) BS03 MG ? GO:0000122 ... P31947 33006579
    144843 6y3r:A (1.5) BS02 MG ? GO:0000122 ... P31947 33006579
    144844 6y3s:A (1.95) BS02 MG ? GO:0000122 ... P31947 33006579
    144845 6y3v:A (1.499) BS02 MG ? GO:0000122 ... P31947 33006579
    144846 6y3w:A (1.34) BS02 MG ? GO:0000122 ... P31947 33196173
    144847 6y3z:P (3.49) BS01 MG 6.3.2.25 GO:0005524 ... P38254 32396195
    144848 6y41:A (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144849 6y41:B (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144850 6y41:C (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144851 6y41:D (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144852 6y41:E (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144853 6y41:F (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144854 6y41:G (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144855 6y41:H (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144856 6y41:I (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144857 6y41:J (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144858 6y41:K (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144859 6y41:L (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144860 6y41:M (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144861 6y41:N (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144862 6y41:O (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144863 6y41:P (1.79) BS01 CA ? N/A Q9UKU9 N/A
    144864 6y43:A (1.6) BS01 CA ? N/A Q8NI99 N/A
    144865 6y44:A (1.71) BS02 MG ? GO:0000122 ... P31947 33006579
    144866 6y4a:AAA (1.785) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    144867 6y4a:AAA (1.785) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    144868 6y4a:AAA (1.785) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    144869 6y4a:BBB (1.785) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    144870 6y4a:BBB (1.785) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    144871 6y4a:BBB (1.785) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    144872 6y4a:CCC (1.785) BS01 CU ? GO:0005507 ... B5HSR1 N/A
    144873 6y4a:CCC (1.785) BS02 CU ? GO:0005507 ... B5HSR1 N/A
    144874 6y4a:CCC (1.785) BS03 CU ? GO:0005507 ... B5HSR1 N/A
    144875 6y4e:A (1.02) BS01 ZN ? N/A B4EUK6 32780778
    144876 6y4f:A (1.75) BS01 ZN ? N/A B4EUK6 32780778
    144877 6y4i:E (1.16) BS01 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    144878 6y4i:E (1.16) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    144879 6y4i:E (1.16) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    144880 6y4i:E (1.16) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    144881 6y4i:E (1.16) BS05 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    144882 6y4m:A (3.34) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    144883 6y4m:C (3.34) BS04 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    144884 6y4n:A (2.852) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    144885 6y4n:C (2.852) BS04 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    144886 6y4o:A (1.83549) BS02 CA ? GO:0000086 ... P0DP23 32317284
    144887 6y4o:A (1.83549) BS03 CA ? GO:0000086 ... P0DP23 32317284
    144888 6y4o:A (1.83549) BS04 CA ? GO:0000086 ... P0DP23 32317284
    144889 6y4o:A (1.83549) BS05 CA ? GO:0000086 ... P0DP23 32317284
    144890 6y4p:A (2.13326) BS02 CA ? GO:0000086 ... P0DP23 32317284
    144891 6y4p:A (2.13326) BS03 CA ? GO:0000086 ... P0DP23 32317284
    144892 6y4p:A (2.13326) BS04 CA ? GO:0000086 ... P0DP23 32317284
    144893 6y4p:A (2.13326) BS05 CA ? GO:0000086 ... P0DP23 32317284
    144894 6y50:y (4.1) BS01 ZN ? GO:0000398 ... Q7RTV0 32494006
    144895 6y57:Lg (3.5) BS02 ZN ? GO:0002181 ... P49207 32268098
    144896 6y57:Lj (3.5) BS03 ZN ? GO:0002181 ... P61927 32268098
    144897 6y57:Lm (3.5) BS02 ZN ? GO:0002181 ... P62987 32268098
    144898 6y57:Lp (3.5) BS02 ZN ? GO:0002181 ... P61513 32268098
    144899 6y57:Sa (3.5) BS02 ZN ? GO:0002181 ... P62854 32268098
    144900 6y57:Sd (3.5) BS02 ZN ? GO:0002181 ... P62273 32268098
    144901 6y58:A (1.904) BS02 MG ? GO:0000122 ... P31947 33196173
    144902 6y5d:K (4.1) BS02 ZN 2.7.7.86 N/A Q8N884 32911482
    144903 6y5d:L (4.1) BS02 ZN 2.7.7.86 N/A Q8N884 32911482
    144904 6y5e:K (3.15) BS02 ZN 2.7.7.86 N/A Q8N884 32911482
    144905 6y5m:A (2.011) BS02 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 33160025
    144906 6y5m:A (2.011) BS03 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 33160025
    144907 6y5n:A (1.88) BS01 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144908 6y5n:A (1.88) BS02 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144909 6y5n:B (1.88) BS01 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144910 6y5n:B (1.88) BS02 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144911 6y5p:A (1.74) BS02 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144912 6y5p:A (1.74) BS03 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144913 6y5p:B (1.74) BS02 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144914 6y5p:B (1.74) BS03 ZN 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    144915 6y5s:A (0.95) BS01 CA 3.4.21.62 GO:0004252 ... P29600 32617193
    144916 6y5t:A (1.1) BS01 CA 3.4.21.62 GO:0004252 ... P29600 32617193
    144917 6y5x:A (2.3) BS01 MG ? GO:0005198 ... A0A024B5J2 32723915
    144918 6y5x:C (2.3) BS01 MG ? GO:0005198 ... A0A024B5J2 32723915
    144919 6y5x:D (2.3) BS01 MG ? GO:0005198 ... A0A024B5J2 32723915
    144920 6y5x:E (2.3) BS01 MG ? GO:0005198 ... A0A024B5J2 32723915
    144921 6y5x:I (2.3) BS01 MG ? GO:0005198 ... A0A024B5J2 32723915
    144922 6y63:AAA (1.651) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144923 6y63:DDD (1.651) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144924 6y63:EEE (1.651) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144925 6y63:HHH (1.651) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144926 6y63:III (1.651) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144927 6y64:A (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144928 6y64:B (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144929 6y64:C (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144930 6y64:C (1.6) BS03 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144931 6y64:E (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144932 6y64:F (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144933 6y64:G (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144934 6y64:H (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144935 6y64:H (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144936 6y64:I (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144937 6y64:J (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    144938 6y6d:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 32657585
    144939 6y6d:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 32657585
    144940 6y6d:D (2.2) BS02 MG ? GO:0000226 ... Q6B856 32657585
    144941 6y6d:F (2.2) BS02 MG N/A GO:0036211 ... N/A 32657585
    144942 6y6j:A (1.5) BS03 ZN 3.5.2.6 GO:0016787 ... D1MEN9 N/A
    144943 6y6j:A (1.5) BS04 ZN 3.5.2.6 GO:0016787 ... D1MEN9 N/A
    144944 6y6s:A (2.1) BS02 CA 3.2.1.46 GO:0004336 ... P54818 33488964
    144945 6y6t:A (2.25) BS02 CA 3.2.1.46 GO:0004336 ... P54818 33488964
    144946 6y6x:LA (2.8) BS02 MG ? GO:0002181 ... P62917 32601485
    144947 6y6x:Le (2.8) BS02 MG ? GO:0002181 ... P62910 32601485
    144948 6y6x:Lg (2.8) BS02 MG ? GO:0002181 ... P49207 32601485
    144949 6y6x:Lj (2.8) BS03 ZN ? GO:0003735 ... P61927 32601485
    144950 6y6x:Lm (2.8) BS02 ZN ? GO:0003735 ... P62987 32601485
    144951 6y6x:Lo (2.8) BS02 ZN ? GO:0002181 ... P83881 32601485
    144952 6y6x:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 32601485
    144953 6y6y:A (1.67) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    144954 6y6y:B (1.67) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144955 6y71:A (1.64) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144956 6y71:B (1.64) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144957 6y72:A (1.55) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144958 6y72:B (1.55) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144959 6y74:A (1.53) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 N/A
    144960 6y74:B (1.53) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 N/A
    144961 6y75:A (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    144962 6y75:B (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    144963 6y75:C (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    144964 6y75:D (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    144965 6y77:A (1.49) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    144966 6y77:B (1.49) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    144967 6y79:M (2.96) BS01 ZN ? GO:0005739 ... Q6C8J9 33243981
    144968 6y7d:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144969 6y7e:A (1.6) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    144970 6y7e:A (1.6) BS02 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    144971 6y7e:B (1.6) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    144972 6y7e:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    144973 6y7w:A (1.39) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144974 6y7w:A (1.39) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144975 6y7x:A (1.45) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144976 6y7x:A (1.45) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144977 6y7y:A (1.51) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144978 6y7y:A (1.51) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144979 6y7y:A (1.51) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144980 6y7z:A (1.35) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144981 6y7z:A (1.35) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144982 6y80:A (1.24) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144983 6y80:A (1.24) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144984 6y81:A (1.54) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144985 6y81:A (1.54) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144986 6y81:A (1.54) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    144987 6y82:A (1.44) BS02 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144988 6y82:A (1.44) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144989 6y82:A (1.44) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144990 6y85:A (1.58) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144991 6y85:A (1.58) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144992 6y8c:A (1.76) BS02 MG 2.7.11.11 GO:0000287 ... P25321 N/A
    144993 6y8d:A (1.51) BS02 MG ? GO:0000122 ... P31947 33006579
    144994 6y8e:A (1.42) BS02 CA ? GO:0000122 ... P31947 33006579
    144995 6y8f:A (1.472) BS04 CA ? GO:0005975 ... A0A7M4DUB5 35414716
    144996 6y8f:A (1.472) BS05 CA ? GO:0005975 ... A0A7M4DUB5 35414716
    144997 6y8h:A (1.37) BS02 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144998 6y8h:A (1.37) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    144999 6y8l:A (1.4) BS02 ZN 5.6.2.2 GO:0003677 ... G7CIP8 32728686
    145000 6y8l:B (1.4) BS01 ZN 5.6.2.2 GO:0003677 ... G7CIP8 32728686

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218