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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144201 6xlt:A (1.478) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 33091303
    144202 6xlt:A (1.478) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    144203 6xm6:A (1.45) BS01 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144204 6xm7:A (1.45) BS02 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144205 6xm7:A (1.45) BS03 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144206 6xm7:A (1.45) BS04 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144207 6xm8:A (1.85) BS01 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144208 6xm9:A (1.651) BS02 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144209 6xma:A (1.45) BS01 FE 1.13.11.- GO:0010436 ... G2IQT9 33965373
    144210 6xmf:A (3.1) BS02 ZN N/A N/A N/A 33495647
    144211 6xmg:A (4.8) BS03 ZN N/A N/A N/A 33495647
    144212 6xmq:A (3.7) BS02 MG 7.4.2.- GO:0000166 ... P39986 32973005
    144213 6xmr:A (1.7) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    144214 6xmr:A (1.7) BS02 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    144215 6xmr:B (1.7) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    144216 6xmr:B (1.7) BS02 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    144217 6xms:A (3.4) BS01 MG 7.4.2.- GO:0000166 ... P39986 32973005
    144218 6xmt:A (3.3) BS02 MG 7.4.2.- GO:0000166 ... P39986 32973005
    144219 6xmu:A (3.3) BS02 MG 7.4.2.- GO:0000166 ... P39986 32973005
    144220 6xmy:A (1.4) BS02 ZN 1.1.1.262 GO:0000166 ... Q3V872 N/A
    144221 6xn6:A (1.7) BS02 FE2 1.14.11.78 GO:0016491 ... A0A3B6UEU3 33361191
    144222 6xn8:A (1.95) BS01 MG ? GO:0000166 ... A0A1H8YFL8 N/A
    144223 6xn8:B (1.95) BS02 MG ? GO:0000166 ... A0A1H8YFL8 N/A
    144224 6xnc:B (2.11) BS01 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    144225 6xne:C (1.96) BS01 MG ? N/A P03069 N/A
    144226 6xnx:A (2.7) BS06 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144227 6xnx:A (2.7) BS07 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144228 6xnx:A (2.7) BS08 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144229 6xnx:C (2.7) BS06 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144230 6xnx:C (2.7) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144231 6xny:A (2.9) BS06 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144232 6xny:A (2.9) BS07 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144233 6xny:A (2.9) BS08 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144234 6xny:C (2.9) BS06 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144235 6xny:C (2.9) BS07 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144236 6xny:C (2.9) BS08 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144237 6xnz:A (3.8) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144238 6xnz:C (3.8) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 32945578
    144239 6xo3:A (1.85) BS02 FE2 1.14.11.78 GO:0016491 ... A0A3B6UEU3 33361191
    144240 6xof:A (1.5) BS01 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    144241 6xog:B (1.98) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 33631934
    144242 6xoh:B (2.226) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 33631934
    144243 6xoi:B (2.0) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 33631934
    144244 6xoj:A (1.45) BS03 FE 1.14.11.78 GO:0016491 ... A0A3B6UEU3 33361191
    144245 6xoy:B (1.64) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    144246 6xpd:A (3.8) BS01 ZN ? GO:0006812 ... Q8IWU4 32723473
    144247 6xpd:A (3.8) BS02 ZN ? GO:0006812 ... Q8IWU4 32723473
    144248 6xpd:B (3.8) BS01 ZN ? GO:0006812 ... Q8IWU4 32723473
    144249 6xpd:B (3.8) BS02 ZN ? GO:0006812 ... Q8IWU4 32723473
    144250 6xpe:A (4.1) BS01 ZN ? GO:0006812 ... Q8IWU4 32723473
    144251 6xpe:A (4.1) BS02 ZN ? GO:0006812 ... Q8IWU4 32723473
    144252 6xpe:A (4.1) BS03 ZN ? GO:0006812 ... Q8IWU4 32723473
    144253 6xpe:A (4.1) BS04 ZN ? GO:0006812 ... Q8IWU4 32723473
    144254 6xpe:A (4.1) BS05 ZN ? GO:0006812 ... Q8IWU4 32723473
    144255 6xpe:B (4.1) BS01 ZN ? GO:0006812 ... Q8IWU4 32723473
    144256 6xpe:B (4.1) BS02 ZN ? GO:0006812 ... Q8IWU4 32723473
    144257 6xpe:B (4.1) BS03 ZN ? GO:0006812 ... Q8IWU4 32723473
    144258 6xpe:B (4.1) BS04 ZN ? GO:0006812 ... Q8IWU4 32723473
    144259 6xpe:B (4.1) BS05 ZN ? GO:0006812 ... Q8IWU4 32723473
    144260 6xpn:A (2.26) BS01 ZN ? GO:0007155 ... A1B2F3 32781785
    144261 6xpn:B (2.26) BS01 ZN ? GO:0007155 ... A1B2F3 32781785
    144262 6xpp:A (1.55) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 34046597
    144263 6xpp:B (1.55) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 34046597
    144264 6xpp:C (1.55) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 34046597
    144265 6xpp:D (1.55) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 34046597
    144266 6xqa:D (2.16) BS02 MG ? N/A A0A5H2UYS3 34006841
    144267 6xqb:A (3.4) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    144268 6xqb:A (3.4) BS04 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    144269 6xqb:A (3.4) BS05 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    144270 6xqd:10 (2.8) BS04 MG ? GO:0003735 ... P60493 32817463
    144271 6xqd:10 (2.8) BS05 MG ? GO:0003735 ... P60493 32817463
    144272 6xqd:10 (2.8) BS06 MG ? GO:0003735 ... P60493 32817463
    144273 6xqd:11 (2.8) BS02 MG ? GO:0003735 ... P60494 32817463
    144274 6xqd:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 32817463
    144275 6xqd:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 32817463
    144276 6xqd:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 32817463
    144277 6xqd:15 (2.8) BS02 MG ? GO:0003735 ... P80339 32817463
    144278 6xqd:15 (2.8) BS03 MG ? GO:0003735 ... P80339 32817463
    144279 6xqd:15 (2.8) BS04 MG ? GO:0003735 ... P80339 32817463
    144280 6xqd:15 (2.8) BS05 ZN ? GO:0003735 ... P80339 32817463
    144281 6xqd:16 (2.8) BS02 MG ? GO:0000049 ... P35871 32817463
    144282 6xqd:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 32817463
    144283 6xqd:17 (2.8) BS02 MG ? GO:0003735 ... P80340 32817463
    144284 6xqd:17 (2.8) BS03 MG ? GO:0003735 ... P80340 32817463
    144285 6xqd:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 32817463
    144286 6xqd:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 32817463
    144287 6xqd:18 (2.8) BS04 MG ? GO:0003735 ... Q5SKU1 32817463
    144288 6xqd:18 (2.8) BS05 MG ? GO:0003735 ... Q5SKU1 32817463
    144289 6xqd:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 32817463
    144290 6xqd:1D (2.8) BS03 MG ? GO:0002181 ... P60405 32817463
    144291 6xqd:1D (2.8) BS04 MG ? GO:0002181 ... P60405 32817463
    144292 6xqd:1D (2.8) BS05 MG ? GO:0002181 ... P60405 32817463
    144293 6xqd:1D (2.8) BS06 MG ? GO:0002181 ... P60405 32817463
    144294 6xqd:1D (2.8) BS07 MG ? GO:0002181 ... P60405 32817463
    144295 6xqd:1D (2.8) BS08 MG ? GO:0002181 ... P60405 32817463
    144296 6xqd:1D (2.8) BS09 MG ? GO:0002181 ... P60405 32817463
    144297 6xqd:1D (2.8) BS10 MG ? GO:0002181 ... P60405 32817463
    144298 6xqd:1D (2.8) BS11 MG ? GO:0002181 ... P60405 32817463
    144299 6xqd:1D (2.8) BS12 MG ? GO:0002181 ... P60405 32817463
    144300 6xqd:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 32817463
    144301 6xqd:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 32817463
    144302 6xqd:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 32817463
    144303 6xqd:1E (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 32817463
    144304 6xqd:1E (2.8) BS06 MG ? GO:0003735 ... Q5SHN8 32817463
    144305 6xqd:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 32817463
    144306 6xqd:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 32817463
    144307 6xqd:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 32817463
    144308 6xqd:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 32817463
    144309 6xqd:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 32817463
    144310 6xqd:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 32817463
    144311 6xqd:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 32817463
    144312 6xqd:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 32817463
    144313 6xqd:1N (2.8) BS02 MG ? GO:0003729 ... P60488 32817463
    144314 6xqd:1N (2.8) BS03 MG ? GO:0003729 ... P60488 32817463
    144315 6xqd:1N (2.8) BS04 MG ? GO:0003729 ... P60488 32817463
    144316 6xqd:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 32817463
    144317 6xqd:1O (2.8) BS04 MG ? GO:0003735 ... Q5SHP8 32817463
    144318 6xqd:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 32817463
    144319 6xqd:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 32817463
    144320 6xqd:1Q (2.8) BS03 MG ? GO:0000049 ... P60489 32817463
    144321 6xqd:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 32817463
    144322 6xqd:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 32817463
    144323 6xqd:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 32817463
    144324 6xqd:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 32817463
    144325 6xqd:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 32817463
    144326 6xqd:1R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 32817463
    144327 6xqd:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 32817463
    144328 6xqd:1U (2.8) BS02 MG ? GO:0000027 ... P60491 32817463
    144329 6xqd:1U (2.8) BS03 MG ? GO:0000027 ... P60491 32817463
    144330 6xqd:1U (2.8) BS04 MG ? GO:0000027 ... P60491 32817463
    144331 6xqd:1U (2.8) BS05 MG ? GO:0000027 ... P60491 32817463
    144332 6xqd:1U (2.8) BS06 MG ? GO:0000027 ... P60491 32817463
    144333 6xqd:1U (2.8) BS07 MG ? GO:0000027 ... P60491 32817463
    144334 6xqd:1V (2.8) BS02 MG ? GO:0003723 ... P60492 32817463
    144335 6xqd:1V (2.8) BS03 MG ? GO:0003723 ... P60492 32817463
    144336 6xqd:1V (2.8) BS04 MG ? GO:0003723 ... P60492 32817463
    144337 6xqd:1V (2.8) BS05 MG ? GO:0003723 ... P60492 32817463
    144338 6xqd:1V (2.8) BS06 MG ? GO:0003723 ... P60492 32817463
    144339 6xqd:1V (2.8) BS07 MG ? GO:0003723 ... P60492 32817463
    144340 6xqd:1V (2.8) BS08 MG ? GO:0003723 ... P60492 32817463
    144341 6xqd:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 32817463
    144342 6xqd:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 32817463
    144343 6xqd:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 32817463
    144344 6xqd:1W (2.8) BS05 MG ? GO:0003735 ... Q5SHP3 32817463
    144345 6xqd:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 32817463
    144346 6xqd:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 32817463
    144347 6xqd:1X (2.8) BS04 MG ? GO:0000027 ... Q5SHP0 32817463
    144348 6xqd:1Y (2.8) BS02 MG ? GO:0003723 ... Q5SHP9 32817463
    144349 6xqd:1Y (2.8) BS03 ZN ? GO:0003723 ... Q5SHP9 32817463
    144350 6xqd:1b (2.8) BS02 MG ? GO:0003735 ... P80371 32817463
    144351 6xqd:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 32817463
    144352 6xqd:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 32817463
    144353 6xqd:1k (2.8) BS02 MG ? GO:0003735 ... P80376 32817463
    144354 6xqd:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 32817463
    144355 6xqd:1m (2.8) BS03 MG ? GO:0000049 ... P80377 32817463
    144356 6xqd:1m (2.8) BS04 MG ? GO:0000049 ... P80377 32817463
    144357 6xqd:1n (2.8) BS02 MG ? GO:0003735 ... P0DOY6 32817463
    144358 6xqd:1n (2.8) BS03 ZN ? GO:0003735 ... P0DOY6 32817463
    144359 6xqd:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 32817463
    144360 6xqd:25 (2.8) BS02 MG ? GO:0003735 ... P80339 32817463
    144361 6xqd:25 (2.8) BS03 MG ? GO:0003735 ... P80339 32817463
    144362 6xqd:25 (2.8) BS04 ZN ? GO:0003735 ... P80339 32817463
    144363 6xqd:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 32817463
    144364 6xqd:28 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 32817463
    144365 6xqd:29 (2.8) BS02 MG ? GO:0003735 ... Q5SHR2 32817463
    144366 6xqd:29 (2.8) BS03 ZN ? GO:0003735 ... Q5SHR2 32817463
    144367 6xqd:2D (2.8) BS03 MG ? GO:0002181 ... P60405 32817463
    144368 6xqd:2D (2.8) BS04 MG ? GO:0002181 ... P60405 32817463
    144369 6xqd:2D (2.8) BS05 MG ? GO:0002181 ... P60405 32817463
    144370 6xqd:2D (2.8) BS06 MG ? GO:0002181 ... P60405 32817463
    144371 6xqd:2D (2.8) BS07 MG ? GO:0002181 ... P60405 32817463
    144372 6xqd:2D (2.8) BS08 MG ? GO:0002181 ... P60405 32817463
    144373 6xqd:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 32817463
    144374 6xqd:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 32817463
    144375 6xqd:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 32817463
    144376 6xqd:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 32817463
    144377 6xqd:2Q (2.8) BS03 MG ? GO:0000049 ... P60489 32817463
    144378 6xqd:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 32817463
    144379 6xqd:2U (2.8) BS02 MG ? GO:0000027 ... P60491 32817463
    144380 6xqd:2V (2.8) BS02 MG ? GO:0003723 ... P60492 32817463
    144381 6xqd:2V (2.8) BS03 MG ? GO:0003723 ... P60492 32817463
    144382 6xqd:2X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 32817463
    144383 6xqd:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 32817463
    144384 6xqd:2Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 32817463
    144385 6xqd:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 32817463
    144386 6xqd:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 32817463
    144387 6xqd:2j (2.8) BS02 MG ? GO:0000049 ... Q5SHN7 32817463
    144388 6xqd:2j (2.8) BS03 MG ? GO:0000049 ... Q5SHN7 32817463
    144389 6xqd:2k (2.8) BS02 MG ? GO:0003735 ... P80376 32817463
    144390 6xqd:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 32817463
    144391 6xqd:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 32817463
    144392 6xqd:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 32817463
    144393 6xqd:2q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 32817463
    144394 6xqd:2t (2.8) BS02 MG ? GO:0003723 ... P80380 32817463
    144395 6xqe:10 (3.0) BS03 MG ? GO:0003735 ... P60493 32817463
    144396 6xqe:10 (3.0) BS04 MG ? GO:0003735 ... P60493 32817463
    144397 6xqe:11 (3.0) BS02 MG ? GO:0003735 ... P60494 32817463
    144398 6xqe:12 (3.0) BS02 MG ? GO:0003735 ... Q5SHP6 32817463
    144399 6xqe:12 (3.0) BS03 MG ? GO:0003735 ... Q5SHP6 32817463
    144400 6xqe:13 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 32817463

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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