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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    143801 6xhx:14 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    143802 6xhx:15 (2.55) BS02 MG ? GO:0003735 ... P80339 33462493
    143803 6xhx:15 (2.55) BS03 MG ? GO:0003735 ... P80339 33462493
    143804 6xhx:15 (2.55) BS04 ZN ? GO:0003735 ... P80339 33462493
    143805 6xhx:16 (2.55) BS02 ZN ? GO:0000049 ... P35871 33462493
    143806 6xhx:17 (2.55) BS02 MG ? GO:0003735 ... P80340 33462493
    143807 6xhx:17 (2.55) BS03 MG ? GO:0003735 ... P80340 33462493
    143808 6xhx:17 (2.55) BS04 MG ? GO:0003735 ... P80340 33462493
    143809 6xhx:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 33462493
    143810 6xhx:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    143811 6xhx:1D (2.55) BS02 MG ? GO:0002181 ... P60405 33462493
    143812 6xhx:1D (2.55) BS03 MG ? GO:0002181 ... P60405 33462493
    143813 6xhx:1D (2.55) BS04 MG ? GO:0002181 ... P60405 33462493
    143814 6xhx:1D (2.55) BS05 MG ? GO:0002181 ... P60405 33462493
    143815 6xhx:1D (2.55) BS06 MG ? GO:0002181 ... P60405 33462493
    143816 6xhx:1D (2.55) BS07 MG ? GO:0002181 ... P60405 33462493
    143817 6xhx:1D (2.55) BS08 MG ? GO:0002181 ... P60405 33462493
    143818 6xhx:1D (2.55) BS09 MG ? GO:0002181 ... P60405 33462493
    143819 6xhx:1D (2.55) BS10 MG ? GO:0002181 ... P60405 33462493
    143820 6xhx:1D (2.55) BS11 MG ? GO:0002181 ... P60405 33462493
    143821 6xhx:1D (2.55) BS12 MG ? GO:0002181 ... P60405 33462493
    143822 6xhx:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    143823 6xhx:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 33462493
    143824 6xhx:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 33462493
    143825 6xhx:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 33462493
    143826 6xhx:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    143827 6xhx:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    143828 6xhx:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    143829 6xhx:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 33462493
    143830 6xhx:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 33462493
    143831 6xhx:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 33462493
    143832 6xhx:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 33462493
    143833 6xhx:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 33462493
    143834 6xhx:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 33462493
    143835 6xhx:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 33462493
    143836 6xhx:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 33462493
    143837 6xhx:1G (2.55) BS03 MG ? GO:0000049 ... Q5SHQ0 33462493
    143838 6xhx:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    143839 6xhx:1N (2.55) BS02 MG ? GO:0003729 ... P60488 33462493
    143840 6xhx:1N (2.55) BS03 MG ? GO:0003729 ... P60488 33462493
    143841 6xhx:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 33462493
    143842 6xhx:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 33462493
    143843 6xhx:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 33462493
    143844 6xhx:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 33462493
    143845 6xhx:1Q (2.55) BS03 MG ? GO:0000049 ... P60489 33462493
    143846 6xhx:1Q (2.55) BS04 MG ? GO:0000049 ... P60489 33462493
    143847 6xhx:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 33462493
    143848 6xhx:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 33462493
    143849 6xhx:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 33462493
    143850 6xhx:1R (2.55) BS04 MG ? GO:0003735 ... Q9Z9H5 33462493
    143851 6xhx:1R (2.55) BS05 MG ? GO:0003735 ... Q9Z9H5 33462493
    143852 6xhx:1R (2.55) BS06 MG ? GO:0003735 ... Q9Z9H5 33462493
    143853 6xhx:1U (2.55) BS02 MG ? GO:0000027 ... P60491 33462493
    143854 6xhx:1U (2.55) BS03 MG ? GO:0000027 ... P60491 33462493
    143855 6xhx:1U (2.55) BS04 MG ? GO:0000027 ... P60491 33462493
    143856 6xhx:1U (2.55) BS05 MG ? GO:0000027 ... P60491 33462493
    143857 6xhx:1U (2.55) BS06 MG ? GO:0000027 ... P60491 33462493
    143858 6xhx:1U (2.55) BS07 MG ? GO:0000027 ... P60491 33462493
    143859 6xhx:1V (2.55) BS02 MG ? GO:0003723 ... P60492 33462493
    143860 6xhx:1V (2.55) BS03 MG ? GO:0003723 ... P60492 33462493
    143861 6xhx:1V (2.55) BS04 MG ? GO:0003723 ... P60492 33462493
    143862 6xhx:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    143863 6xhx:1Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 33462493
    143864 6xhx:1b (2.55) BS02 MG ? GO:0003735 ... P80371 33462493
    143865 6xhx:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    143866 6xhx:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 33462493
    143867 6xhx:1m (2.55) BS02 MG ? GO:0000049 ... P80377 33462493
    143868 6xhx:1n (2.55) BS02 MG ? GO:0003735 ... P0DOY6 33462493
    143869 6xhx:1n (2.55) BS03 ZN ? GO:0003735 ... P0DOY6 33462493
    143870 6xhx:1t (2.55) BS02 MG ? GO:0003723 ... P80380 33462493
    143871 6xhx:1y (2.55) BS02 MG ? GO:0005515 ... P0AD49 33462493
    143872 6xhx:1y (2.55) BS03 MG ? GO:0005515 ... P0AD49 33462493
    143873 6xhx:20 (2.55) BS03 MG ? GO:0003735 ... P60493 33462493
    143874 6xhx:23 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    143875 6xhx:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    143876 6xhx:25 (2.55) BS02 MG ? GO:0003735 ... P80339 33462493
    143877 6xhx:25 (2.55) BS03 MG ? GO:0003735 ... P80339 33462493
    143878 6xhx:25 (2.55) BS04 ZN ? GO:0003735 ... P80339 33462493
    143879 6xhx:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 33462493
    143880 6xhx:27 (2.55) BS02 MG ? GO:0003735 ... P80340 33462493
    143881 6xhx:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    143882 6xhx:2D (2.55) BS03 MG ? GO:0002181 ... P60405 33462493
    143883 6xhx:2D (2.55) BS04 MG ? GO:0002181 ... P60405 33462493
    143884 6xhx:2D (2.55) BS05 MG ? GO:0002181 ... P60405 33462493
    143885 6xhx:2D (2.55) BS06 MG ? GO:0002181 ... P60405 33462493
    143886 6xhx:2D (2.55) BS07 MG ? GO:0002181 ... P60405 33462493
    143887 6xhx:2D (2.55) BS08 MG ? GO:0002181 ... P60405 33462493
    143888 6xhx:2E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    143889 6xhx:2E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 33462493
    143890 6xhx:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    143891 6xhx:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    143892 6xhx:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    143893 6xhx:2F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 33462493
    143894 6xhx:2G (2.55) BS03 MG ? GO:0000049 ... Q5SHQ0 33462493
    143895 6xhx:2I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 33462493
    143896 6xhx:2Q (2.55) BS03 MG ? GO:0000049 ... P60489 33462493
    143897 6xhx:2R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 33462493
    143898 6xhx:2U (2.55) BS02 MG ? GO:0000027 ... P60491 33462493
    143899 6xhx:2V (2.55) BS02 MG ? GO:0003723 ... P60492 33462493
    143900 6xhx:2V (2.55) BS03 MG ? GO:0003723 ... P60492 33462493
    143901 6xhx:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    143902 6xhx:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 33462493
    143903 6xhx:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 33462493
    143904 6xhx:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    143905 6xhx:2j (2.55) BS02 MG ? GO:0000049 ... Q5SHN7 33462493
    143906 6xhx:2k (2.55) BS02 MG ? GO:0003735 ... P80376 33462493
    143907 6xhx:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 33462493
    143908 6xhx:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    143909 6xhy:10 (2.6) BS04 MG ? GO:0003735 ... P60493 33462493
    143910 6xhy:10 (2.6) BS05 MG ? GO:0003735 ... P60493 33462493
    143911 6xhy:10 (2.6) BS06 MG ? GO:0003735 ... P60493 33462493
    143912 6xhy:11 (2.6) BS03 MG ? GO:0003735 ... P60494 33462493
    143913 6xhy:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 33462493
    143914 6xhy:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    143915 6xhy:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 33462493
    143916 6xhy:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    143917 6xhy:15 (2.6) BS02 MG ? GO:0003735 ... P80339 33462493
    143918 6xhy:15 (2.6) BS03 MG ? GO:0003735 ... P80339 33462493
    143919 6xhy:15 (2.6) BS04 ZN ? GO:0003735 ... P80339 33462493
    143920 6xhy:16 (2.6) BS02 MG ? GO:0000049 ... P35871 33462493
    143921 6xhy:16 (2.6) BS03 MG ? GO:0000049 ... P35871 33462493
    143922 6xhy:16 (2.6) BS04 ZN ? GO:0000049 ... P35871 33462493
    143923 6xhy:17 (2.6) BS02 MG ? GO:0003735 ... P80340 33462493
    143924 6xhy:17 (2.6) BS03 MG ? GO:0003735 ... P80340 33462493
    143925 6xhy:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 33462493
    143926 6xhy:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 33462493
    143927 6xhy:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 33462493
    143928 6xhy:18 (2.6) BS05 MG ? GO:0003735 ... Q5SKU1 33462493
    143929 6xhy:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    143930 6xhy:1D (2.6) BS03 MG ? GO:0002181 ... P60405 33462493
    143931 6xhy:1D (2.6) BS04 MG ? GO:0002181 ... P60405 33462493
    143932 6xhy:1D (2.6) BS05 MG ? GO:0002181 ... P60405 33462493
    143933 6xhy:1D (2.6) BS06 MG ? GO:0002181 ... P60405 33462493
    143934 6xhy:1D (2.6) BS07 MG ? GO:0002181 ... P60405 33462493
    143935 6xhy:1D (2.6) BS08 MG ? GO:0002181 ... P60405 33462493
    143936 6xhy:1D (2.6) BS09 MG ? GO:0002181 ... P60405 33462493
    143937 6xhy:1D (2.6) BS10 MG ? GO:0002181 ... P60405 33462493
    143938 6xhy:1D (2.6) BS11 MG ? GO:0002181 ... P60405 33462493
    143939 6xhy:1D (2.6) BS12 MG ? GO:0002181 ... P60405 33462493
    143940 6xhy:1D (2.6) BS13 MG ? GO:0002181 ... P60405 33462493
    143941 6xhy:1D (2.6) BS14 MG ? GO:0002181 ... P60405 33462493
    143942 6xhy:1D (2.6) BS15 MG ? GO:0002181 ... P60405 33462493
    143943 6xhy:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    143944 6xhy:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 33462493
    143945 6xhy:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 33462493
    143946 6xhy:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 33462493
    143947 6xhy:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 33462493
    143948 6xhy:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    143949 6xhy:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    143950 6xhy:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    143951 6xhy:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 33462493
    143952 6xhy:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 33462493
    143953 6xhy:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 33462493
    143954 6xhy:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 33462493
    143955 6xhy:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 33462493
    143956 6xhy:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 33462493
    143957 6xhy:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    143958 6xhy:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 33462493
    143959 6xhy:1N (2.6) BS02 MG ? GO:0003729 ... P60488 33462493
    143960 6xhy:1N (2.6) BS03 MG ? GO:0003729 ... P60488 33462493
    143961 6xhy:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 33462493
    143962 6xhy:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 33462493
    143963 6xhy:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 33462493
    143964 6xhy:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 33462493
    143965 6xhy:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 33462493
    143966 6xhy:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 33462493
    143967 6xhy:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 33462493
    143968 6xhy:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 33462493
    143969 6xhy:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 33462493
    143970 6xhy:1Q (2.6) BS08 MG ? GO:0000049 ... P60489 33462493
    143971 6xhy:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 33462493
    143972 6xhy:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 33462493
    143973 6xhy:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 33462493
    143974 6xhy:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 33462493
    143975 6xhy:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 33462493
    143976 6xhy:1T (2.6) BS03 MG ? GO:0003735 ... P60490 33462493
    143977 6xhy:1U (2.6) BS02 MG ? GO:0000027 ... P60491 33462493
    143978 6xhy:1U (2.6) BS03 MG ? GO:0000027 ... P60491 33462493
    143979 6xhy:1U (2.6) BS04 MG ? GO:0000027 ... P60491 33462493
    143980 6xhy:1U (2.6) BS05 MG ? GO:0000027 ... P60491 33462493
    143981 6xhy:1U (2.6) BS06 MG ? GO:0000027 ... P60491 33462493
    143982 6xhy:1U (2.6) BS07 MG ? GO:0000027 ... P60491 33462493
    143983 6xhy:1V (2.6) BS02 MG ? GO:0003723 ... P60492 33462493
    143984 6xhy:1V (2.6) BS03 MG ? GO:0003723 ... P60492 33462493
    143985 6xhy:1V (2.6) BS04 MG ? GO:0003723 ... P60492 33462493
    143986 6xhy:1V (2.6) BS05 MG ? GO:0003723 ... P60492 33462493
    143987 6xhy:1V (2.6) BS06 MG ? GO:0003723 ... P60492 33462493
    143988 6xhy:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    143989 6xhy:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 33462493
    143990 6xhy:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 33462493
    143991 6xhy:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 33462493
    143992 6xhy:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 33462493
    143993 6xhy:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 33462493
    143994 6xhy:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 33462493
    143995 6xhy:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 33462493
    143996 6xhy:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 33462493
    143997 6xhy:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 33462493
    143998 6xhy:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 33462493
    143999 6xhy:1Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 33462493
    144000 6xhy:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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