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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    143201 6x71:A (1.78) BS05 MG 2.7.7.- GO:0003684 ... P12689 32999062
    143202 6x72:A (2.19) BS05 MG 2.7.7.- GO:0003684 ... P12689 32999062
    143203 6x73:A (2.05) BS03 MG 2.7.7.- GO:0003684 ... P12689 32999062
    143204 6x74:A (1.69) BS03 MG 2.7.7.- GO:0003684 ... P12689 32999062
    143205 6x75:A (1.95) BS03 MN 2.7.7.- GO:0003684 ... P12689 32999062
    143206 6x75:A (1.95) BS04 MN 2.7.7.- GO:0003684 ... P12689 32999062
    143207 6x75:A (1.95) BS05 MN 2.7.7.- GO:0003684 ... P12689 32999062
    143208 6x76:A (2.53) BS03 MN 2.7.7.- GO:0003684 ... P12689 32999062
    143209 6x76:A (2.53) BS04 MN 2.7.7.- GO:0003684 ... P12689 32999062
    143210 6x76:A (2.53) BS05 MN 2.7.7.- GO:0003684 ... P12689 32999062
    143211 6x77:A (1.64) BS03 CA 2.7.7.- GO:0003684 ... P12689 32999062
    143212 6x77:A (1.64) BS04 CA 2.7.7.- GO:0003684 ... P12689 32999062
    143213 6x77:A (1.64) BS05 CA 2.7.7.- GO:0003684 ... P12689 32999062
    143214 6x7e:A (1.9987) BS02 CO ? GO:0005506 ... P0ABE7 32830423
    143215 6x7e:B (1.9987) BS01 CO ? GO:0005506 ... P0ABE7 32830423
    143216 6x7e:C (1.9987) BS01 CO ? GO:0005506 ... P0ABE7 32830423
    143217 6x7f:AE (3.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143218 6x7f:AE (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143219 6x7f:AE (3.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143220 6x7j:A (0.97) BS02 CA ? N/A A1YIY3 33824212
    143221 6x7j:A (0.97) BS03 CA ? N/A A1YIY3 33824212
    143222 6x7j:A (0.97) BS04 CA ? N/A A1YIY3 33824212
    143223 6x7j:A (0.97) BS05 CA ? N/A A1YIY3 33824212
    143224 6x7j:A (0.97) BS07 CA ? N/A A1YIY3 33824212
    143225 6x7k:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143226 6x7k:AE (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143227 6x7k:AE (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143228 6x7q:A (1.68) BS02 ZN 2.3.1.28 GO:0008811 ... P00484 N/A
    143229 6x7q:C (1.68) BS05 ZN 2.3.1.28 GO:0008811 ... P00484 N/A
    143230 6x7t:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    143231 6x7t:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143232 6x7t:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143233 6x7t:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143234 6x7t:A (1.0) BS05 CA ? N/A A1YIY3 33824212
    143235 6x7u:A (2.7) BS02 MN 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 32432673
    143236 6x7u:A (2.7) BS03 MN 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 32432673
    143237 6x7u:C (2.7) BS03 MN 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 32432673
    143238 6x7v:A (2.3) BS01 MN 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 32432673
    143239 6x7x:A (1.3) BS01 CA ? N/A A1YIY3 33824212
    143240 6x7x:A (1.3) BS02 CA ? N/A A1YIY3 33824212
    143241 6x7x:A (1.3) BS03 CA ? N/A A1YIY3 33824212
    143242 6x7x:A (1.3) BS04 CA ? N/A A1YIY3 33824212
    143243 6x7x:A (1.3) BS05 CA ? N/A A1YIY3 33824212
    143244 6x7x:A (1.3) BS06 CA ? N/A A1YIY3 33824212
    143245 6x7y:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    143246 6x7y:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143247 6x7y:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143248 6x7y:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143249 6x7z:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    143250 6x7z:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143251 6x7z:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143252 6x7z:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143253 6x89:G2 (3.9) BS01 ZN ? GO:0005737 ... A0A1S3U544 32840211
    143254 6x89:S6 (3.9) BS01 ZN ? GO:0005739 ... A0A1S3VYF3 32840211
    143255 6x8a:A (1.06) BS02 CA ? N/A A1YIY3 33824212
    143256 6x8a:A (1.06) BS03 CA ? N/A A1YIY3 33824212
    143257 6x8a:A (1.06) BS04 CA ? N/A A1YIY3 33824212
    143258 6x8a:A (1.06) BS05 CA ? N/A A1YIY3 33824212
    143259 6x8a:A (1.06) BS06 CA ? N/A A1YIY3 33824212
    143260 6x8a:A (1.06) BS07 CA ? N/A A1YIY3 33824212
    143261 6x8d:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    143262 6x8d:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143263 6x8d:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143264 6x8d:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143265 6x8x:A (2.505) BS02 CU ? GO:0005506 ... P0ABE7 32830423
    143266 6x8x:A (2.505) BS03 CA ? GO:0005506 ... P0ABE7 32830423
    143267 6x8x:A (2.505) BS04 CA ? GO:0005506 ... P0ABE7 32830423
    143268 6x8y:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143269 6x8y:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143270 6x8y:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143271 6x8y:A (1.0) BS05 CA ? N/A A1YIY3 33824212
    143272 6x90:B (2.26) BS01 K ? GO:0005085 ... P11655 33831355
    143273 6x91:B (3.51) BS05 ZN 3.5.4.-
    3.5.4.36    		 GO:0003723 ... P0AEX9
    P41238    		 33094286
    143274 6x91:C (3.51) BS05 ZN 3.5.4.-
    3.5.4.36    		 GO:0003723 ... P0AEX9
    P41238    		 33094286
    143275 6x91:F (3.51) BS04 ZN 3.5.4.-
    3.5.4.36    		 GO:0003723 ... P0AEX9
    P41238    		 33094286
    143276 6x91:G (3.51) BS04 ZN 3.5.4.-
    3.5.4.36    		 GO:0003723 ... P0AEX9
    P41238    		 33094286
    143277 6x91:H (3.51) BS05 ZN 3.5.4.-
    3.5.4.36    		 GO:0003723 ... P0AEX9
    P41238    		 33094286
    143278 6x95:A (1.1) BS02 CA ? N/A A1YIY3 33824212
    143279 6x95:A (1.1) BS03 CA ? N/A A1YIY3 33824212
    143280 6x95:A (1.1) BS04 CA ? N/A A1YIY3 33824212
    143281 6x95:A (1.1) BS05 CA ? N/A A1YIY3 33824212
    143282 6x9i:A (2.2) BS04 ZN 2.1.1.37 GO:0003682 ... P26358 34790902
    143283 6x9i:A (2.2) BS05 ZN 2.1.1.37 GO:0003682 ... P26358 34790902
    143284 6x9j:A (1.79) BS03 ZN 2.1.1.37 GO:0003682 ... P26358 34790902
    143285 6x9j:A (1.79) BS04 ZN 2.1.1.37 GO:0003682 ... P26358 34790902
    143286 6x9k:A (2.65) BS03 ZN 2.1.1.37 GO:0003682 ... P26358 34790902
    143287 6x9k:A (2.65) BS04 ZN 2.1.1.37 GO:0003682 ... P26358 34790902
    143288 6x9m:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    143289 6x9m:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143290 6x9m:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143291 6x9m:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143292 6x9p:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    143293 6x9p:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    143294 6x9p:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    143295 6x9p:A (1.0) BS05 CA ? N/A A1YIY3 33824212
    143296 6x9p:A (1.0) BS06 CA ? N/A A1YIY3 33824212
    143297 6x9q:AE (4.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143298 6x9q:AE (4.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143299 6x9q:AE (4.8) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143300 6xa1:Lg (2.8) BS02 ZN ? GO:0002181 ... P49207 33009412
    143301 6xa1:Lj (2.8) BS03 ZN ? GO:0003735 ... P61927 33009412
    143302 6xa1:Lm (2.8) BS02 ZN ? GO:0003735 ... P62987 33009412
    143303 6xa1:Lo (2.8) BS03 ZN ? GO:0002181 ... P83881 33009412
    143304 6xa1:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 33009412
    143305 6xa1:Sa (2.8) BS02 ZN ? GO:0003735 ... P62854 33009412
    143306 6xa1:Sd (2.8) BS02 ZN ? GO:0002181 ... P62273 33009412
    143307 6xa1:Sf (2.8) BS02 ZN ? GO:0003735 ... P62979 33009412
    143308 6xa5:A (1.03) BS02 CA ? N/A A1YIY3 33824212
    143309 6xa5:A (1.03) BS03 CA ? N/A A1YIY3 33824212
    143310 6xa5:A (1.03) BS04 CA ? N/A A1YIY3 33824212
    143311 6xa5:A (1.03) BS05 CA ? N/A A1YIY3 33824212
    143312 6xa5:A (1.03) BS06 CA ? N/A A1YIY3 33824212
    143313 6xa5:A (1.03) BS07 CA ? N/A A1YIY3 33824212
    143314 6xa9:A (2.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 32845033
    143315 6xa9:C (2.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 32845033
    143316 6xa9:E (2.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 32845033
    143317 6xaa:A (2.7) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 32845033
    143318 6xac:A (1.22) BS02 CA ? N/A A1YIY3 33824212
    143319 6xac:A (1.22) BS03 CA ? N/A A1YIY3 33824212
    143320 6xac:A (1.22) BS04 CA ? N/A A1YIY3 33824212
    143321 6xac:A (1.22) BS05 CA ? N/A A1YIY3 33824212
    143322 6xac:A (1.22) BS06 CA ? N/A A1YIY3 33824212
    143323 6xac:A (1.22) BS07 CA ? N/A A1YIY3 33824212
    143324 6xaq:A (1.2) BS01 CA ? N/A A1YIY3 33824212
    143325 6xaq:A (1.2) BS02 CA ? N/A A1YIY3 33824212
    143326 6xaq:A (1.2) BS03 CA ? N/A A1YIY3 33824212
    143327 6xaq:A (1.2) BS04 CA ? N/A A1YIY3 33824212
    143328 6xaq:A (1.2) BS05 CA ? N/A A1YIY3 33824212
    143329 6xar:A (2.501) BS02 CA 2.3.2.27 GO:0001784 ... P22681 33617900
    143330 6xar:B (2.501) BS02 CA 2.3.2.27 GO:0001784 ... P22681 33617900
    143331 6xas:J (3.8) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 33296676
    143332 6xas:J (3.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33296676
    143333 6xas:J (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33296676
    143334 6xav:J (7.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33296676
    143335 6xav:J (7.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33296676
    143336 6xav:J (7.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33296676
    143337 6xb8:B (3.3) BS02 ZN 3.6.4.12 N/A P03132 33270897
    143338 6xb9:A (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143339 6xb9:A (2.25) BS04 MG ? GO:0005506 ... C1DN94 33662397
    143340 6xb9:B (2.25) BS01 MG ? GO:0005506 ... C1DN94 33662397
    143341 6xb9:B (2.25) BS02 FE ? GO:0005506 ... C1DN94 33662397
    143342 6xb9:C (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143343 6xb9:C (2.25) BS04 MG ? GO:0005506 ... C1DN94 33662397
    143344 6xb9:D (2.25) BS01 MG ? GO:0005506 ... C1DN94 33662397
    143345 6xb9:D (2.25) BS02 FE ? GO:0005506 ... C1DN94 33662397
    143346 6xb9:E (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143347 6xb9:F (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143348 6xb9:G (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143349 6xb9:H (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143350 6xb9:H (2.25) BS05 MG ? GO:0005506 ... C1DN94 33662397
    143351 6xb9:I (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143352 6xb9:J (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143353 6xb9:J (2.25) BS04 MG ? GO:0005506 ... C1DN94 33662397
    143354 6xb9:K (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143355 6xb9:L (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    143356 6xbe:A (1.8) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143357 6xbe:A (1.8) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143358 6xbe:B (1.8) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143359 6xbe:B (1.8) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143360 6xbe:B (1.8) BS04 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143361 6xbe:C (1.8) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143362 6xbe:C (1.8) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143363 6xbe:C (1.8) BS04 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143364 6xbe:D (1.8) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143365 6xbe:D (1.8) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143366 6xbe:D (1.8) BS04 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143367 6xbf:A (2.2) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143368 6xbf:A (2.2) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143369 6xbf:B (2.2) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143370 6xbf:B (2.2) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143371 6xbf:B (2.2) BS04 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143372 6xbf:C (2.2) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143373 6xbf:C (2.2) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143374 6xbf:C (2.2) BS04 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143375 6xbf:D (2.2) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143376 6xbf:D (2.2) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143377 6xbf:D (2.2) BS04 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143378 6xbq:A (1.64) BS01 CO ? GO:0004493 ... Q9L2C2 N/A
    143379 6xbr:A (1.55) BS01 CO ? GO:0004493 ... Q9L2C2 N/A
    143380 6xbs:A (1.5) BS01 CO ? GO:0004493 ... Q9L2C2 N/A
    143381 6xbt:A (1.49) BS01 CO ? GO:0004493 ... Q9L2C2 N/A
    143382 6xbv:A (1.5) BS01 CO ? GO:0004493 ... Q9L2C2 N/A
    143383 6xbw:C (3.37) BS01 MG 7.1.2.2 GO:0000221 ... P31404 32764564
    143384 6xcb:A (1.74) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 32886509
    143385 6xcc:A (1.9) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 32886509
    143386 6xcd:A (1.92) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 32886509
    143387 6xcf:A (1.68) BS02 ZN 3.4.24.69 GO:0004222 ... P0DPI0 32886509
    143388 6xci:A (1.6) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143389 6xci:B (1.6) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 33723038
    143390 6xd0:A (2.012) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 32907977
    143391 6xd0:A (2.012) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 32907977
    143392 6xd1:A (1.954) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 32907977
    143393 6xd1:A (1.954) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 32907977
    143394 6xdk:B (1.6) BS01 CA 2.6.1.52 GO:0004648 ... B2FKF0 N/A
    143395 6xdk:C (1.6) BS01 CA 2.6.1.52 GO:0004648 ... B2FKF0 N/A
    143396 6xdm:A (1.56) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    143397 6xdm:A (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    143398 6xdm:A (1.56) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    143399 6xdm:B (1.56) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    143400 6xdm:B (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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