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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    143001 6x0p:C (1.69) BS04 ZN 2.1.1.359
    2.1.1.367    		 GO:0005634 ... Q9NR48 33990599
    143002 6x0p:D (1.69) BS02 ZN 2.1.1.359
    2.1.1.367    		 GO:0005634 ... Q9NR48 33990599
    143003 6x0p:D (1.69) BS03 ZN 2.1.1.359
    2.1.1.367    		 GO:0005634 ... Q9NR48 33990599
    143004 6x0p:D (1.69) BS04 ZN 2.1.1.359
    2.1.1.367    		 GO:0005634 ... Q9NR48 33990599
    143005 6x11:A (2.097) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    143006 6x11:A (2.097) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    143007 6x15:A (3.05) BS01 NA ? GO:0005283 ... O59010 33155546
    143008 6x15:A (3.05) BS02 NA ? GO:0005283 ... O59010 33155546
    143009 6x15:A (3.05) BS03 NA ? GO:0005283 ... O59010 33155546
    143010 6x15:B (3.05) BS01 NA ? GO:0005283 ... O59010 33155546
    143011 6x15:B (3.05) BS02 NA ? GO:0005283 ... O59010 33155546
    143012 6x15:B (3.05) BS03 NA ? GO:0005283 ... O59010 33155546
    143013 6x15:C (3.05) BS01 NA ? GO:0005283 ... O59010 33155546
    143014 6x15:C (3.05) BS02 NA ? GO:0005283 ... O59010 33155546
    143015 6x15:C (3.05) BS03 NA ? GO:0005283 ... O59010 33155546
    143016 6x1c:A (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34406768
    143017 6x1c:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34406768
    143018 6x1e:A (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34406768
    143019 6x1e:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34406768
    143020 6x1f:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34406768
    143021 6x1f:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34406768
    143022 6x1o:A (2.094) BS04 MG 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    143023 6x1o:C (2.094) BS04 MG 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    143024 6x1q:A (1.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143025 6x1q:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143026 6x1q:B (1.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143027 6x1q:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143028 6x1q:C (1.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143029 6x1q:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143030 6x1q:D (1.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143031 6x1q:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 32695410
    143032 6x1z:A (1.9) BS02 MG 3.1.-.- GO:0004519 ... Q9X1X0 33115610
    143033 6x1z:B (1.9) BS02 MG 3.1.-.- GO:0004519 ... Q9X1X0 33115610
    143034 6x26:J (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143035 6x26:J (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143036 6x26:J (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143037 6x2f:J (4.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143038 6x2f:J (4.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143039 6x2f:J (4.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143040 6x2m:A (2.351) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143041 6x2n:J (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143042 6x2n:J (3.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143043 6x2n:J (3.9) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143044 6x2o:A (2.551) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143045 6x2p:A (2.401) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143046 6x2r:A (2.299) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143047 6x2s:A (2.496) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143048 6x2u:A (2.2) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143049 6x2v:A (2.822) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143050 6x2w:A (3.001) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143051 6x2x:A (2.458) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143052 6x2y:A (2.304) BS02 MG 3.6.5.- GO:0000054 ... P62826 32520643
    143053 6x2z:A (3.03) BS02 NA ? GO:0001662 ... P43005 33658209
    143054 6x2z:A (3.03) BS03 NA ? GO:0001662 ... P43005 33658209
    143055 6x2z:A (3.03) BS04 NA ? GO:0001662 ... P43005 33658209
    143056 6x32:B (3.8) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143057 6x32:E (3.8) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143058 6x32:H (3.8) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143059 6x32:K (3.8) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143060 6x33:B (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143061 6x33:E (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143062 6x33:H (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143063 6x33:K (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143064 6x34:B (4.7) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143065 6x34:D (4.7) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143066 6x34:F (4.7) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143067 6x34:H (4.7) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143068 6x35:B (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143069 6x35:E (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143070 6x35:H (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143071 6x35:K (4.2) BS01 ZN N/A GO:0005216 ... N/A 33547325
    143072 6x38:A (1.3) BS01 ZN 3.1.3.48 N/A P16621 35622884
    143073 6x38:A (1.3) BS02 ZN 3.1.3.48 N/A P16621 35622884
    143074 6x3c:E (3.05) BS03 MG 2.3.1.- GO:0016740 ... P26839 32968273
    143075 6x3e:A (3.42) BS02 NA ? GO:0001662 ... P43005 33658209
    143076 6x3e:A (3.42) BS03 NA ? GO:0001662 ... P43005 33658209
    143077 6x3e:A (3.42) BS04 NA ? GO:0001662 ... P43005 33658209
    143078 6x3j:C (2.7) BS02 MG 2.3.1.- GO:0016740 ... P26839 32968273
    143079 6x42:X (1.2) BS01 CA 3.4.22.- GO:0006508 ... Q9TY95 32955133
    143080 6x42:X (1.2) BS02 CA 3.4.22.- GO:0006508 ... Q9TY95 32955133
    143081 6x43:A (3.6) BS04 MG 3.6.4.- GO:0000716 ... P30958 33480355
    143082 6x43:J (3.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143083 6x43:J (3.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143084 6x46:A (-1.00) BS01 ZN ? N/A Q9DAN6 33789107
    143085 6x46:A (-1.00) BS02 ZN ? N/A Q9DAN6 33789107
    143086 6x4b:A (2.5) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 32643196
    143087 6x4w:J (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143088 6x4w:J (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143089 6x4w:J (3.8) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143090 6x4y:J (3.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143091 6x4y:J (3.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143092 6x4y:J (3.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143093 6x50:A (3.3) BS04 MG 3.6.4.- GO:0000716 ... P30958 33480355
    143094 6x50:J (3.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143095 6x50:J (3.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143096 6x50:J (3.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33480355
    143097 6x59:K (2.98) BS01 ZN 2.7.7.86 N/A Q8C6L5 32911481
    143098 6x5k:N (2.47) BS02 MG 2.3.1.169 GO:0003824 ... P27988 N/A
    143099 6x5r:A (2.4) BS01 MN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    143100 6x5r:B (2.4) BS02 MN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    143101 6x5v:A (1.6) BS02 CA ? N/A A1YIY3 N/A
    143102 6x5v:A (1.6) BS03 CA ? N/A A1YIY3 N/A
    143103 6x5v:A (1.6) BS04 CA ? N/A A1YIY3 N/A
    143104 6x5v:A (1.6) BS05 CA ? N/A A1YIY3 N/A
    143105 6x5v:A (1.6) BS06 CA ? N/A A1YIY3 N/A
    143106 6x5v:A (1.6) BS07 CA ? N/A A1YIY3 N/A
    143107 6x5v:A (1.6) BS08 CA ? N/A A1YIY3 N/A
    143108 6x5v:A (1.6) BS09 CA ? N/A A1YIY3 N/A
    143109 6x5v:A (1.6) BS10 CA ? N/A A1YIY3 N/A
    143110 6x5v:A (1.6) BS11 CA ? N/A A1YIY3 N/A
    143111 6x5v:A (1.6) BS12 CA ? N/A A1YIY3 N/A
    143112 6x5v:A (1.6) BS13 CA ? N/A A1YIY3 N/A
    143113 6x5v:A (1.6) BS14 CA ? N/A A1YIY3 N/A
    143114 6x5v:A (1.6) BS15 CA ? N/A A1YIY3 N/A
    143115 6x5v:A (1.6) BS16 CA ? N/A A1YIY3 N/A
    143116 6x5v:A (1.6) BS17 CA ? N/A A1YIY3 N/A
    143117 6x5w:A (1.8) BS02 CA ? N/A A1YIY3 N/A
    143118 6x5w:A (1.8) BS03 CA ? N/A A1YIY3 N/A
    143119 6x5w:A (1.8) BS04 CA ? N/A A1YIY3 N/A
    143120 6x5w:A (1.8) BS05 CA ? N/A A1YIY3 N/A
    143121 6x5w:A (1.8) BS06 CA ? N/A A1YIY3 N/A
    143122 6x5w:A (1.8) BS07 CA ? N/A A1YIY3 N/A
    143123 6x5w:A (1.8) BS08 CA ? N/A A1YIY3 N/A
    143124 6x5w:A (1.8) BS09 CA ? N/A A1YIY3 N/A
    143125 6x5w:A (1.8) BS10 CA ? N/A A1YIY3 N/A
    143126 6x5w:A (1.8) BS11 CA ? N/A A1YIY3 N/A
    143127 6x5w:A (1.8) BS12 CA ? N/A A1YIY3 N/A
    143128 6x5w:A (1.8) BS13 CA ? N/A A1YIY3 N/A
    143129 6x5w:A (1.8) BS14 CA ? N/A A1YIY3 N/A
    143130 6x5w:A (1.8) BS15 CA ? N/A A1YIY3 N/A
    143131 6x5w:A (1.8) BS16 CA ? N/A A1YIY3 N/A
    143132 6x5x:A (1.92) BS01 CA 3.4.24.- GO:0004222 ... P0DQT6 32946987
    143133 6x5x:A (1.92) BS02 ZN 3.4.24.- GO:0004222 ... P0DQT6 32946987
    143134 6x5z:A (4.24) BS02 MG 3.6.4.- GO:0001725 ... P68139 32730789
    143135 6x5z:B (4.24) BS02 MG 3.6.4.- GO:0001725 ... P68139 32730789
    143136 6x5z:C (4.24) BS02 MG 3.6.4.- GO:0001725 ... P68139 32730789
    143137 6x67:C (3.47) BS05 ZN ? N/A Q283G1 N/A
    143138 6x67:C (3.47) BS06 ZN ? N/A Q283G1 N/A
    143139 6x67:C (3.47) BS07 CA ? N/A Q283G1 N/A
    143140 6x67:C (3.47) BS08 CA ? N/A Q283G1 N/A
    143141 6x67:D (3.47) BS05 ZN ? N/A Q283G1 N/A
    143142 6x67:D (3.47) BS06 ZN ? N/A Q283G1 N/A
    143143 6x67:D (3.47) BS07 CA ? N/A Q283G1 N/A
    143144 6x67:D (3.47) BS08 CA ? N/A Q283G1 N/A
    143145 6x68:C (3.66) BS03 CA ? N/A Q283G1 N/A
    143146 6x68:C (3.66) BS04 ZN ? N/A Q283G1 N/A
    143147 6x68:C (3.66) BS05 ZN ? N/A Q283G1 N/A
    143148 6x68:D (3.66) BS03 ZN ? N/A Q283G1 N/A
    143149 6x68:D (3.66) BS04 ZN ? N/A Q283G1 N/A
    143150 6x68:D (3.66) BS05 CA ? N/A Q283G1 N/A
    143151 6x6d:A (2.48) BS03 ZN ? GO:0003700 ... P04150 34289059
    143152 6x6d:A (2.48) BS04 ZN ? GO:0003700 ... P04150 34289059
    143153 6x6d:B (2.48) BS03 ZN ? GO:0003700 ... P04150 34289059
    143154 6x6d:B (2.48) BS04 ZN ? GO:0003700 ... P04150 34289059
    143155 6x6e:A (2.0) BS03 ZN ? GO:0003700 ... P04150 34289059
    143156 6x6e:A (2.0) BS04 ZN ? GO:0003700 ... P04150 34289059
    143157 6x6e:B (2.0) BS03 ZN ? GO:0003700 ... P04150 34289059
    143158 6x6e:B (2.0) BS04 ZN ? GO:0003700 ... P04150 34289059
    143159 6x6m:A (1.9) BS02 CA ? N/A A1YIY3 N/A
    143160 6x6m:A (1.9) BS03 CA ? N/A A1YIY3 N/A
    143161 6x6m:A (1.9) BS04 CA ? N/A A1YIY3 N/A
    143162 6x6m:A (1.9) BS05 CA ? N/A A1YIY3 N/A
    143163 6x6m:A (1.9) BS06 CA ? N/A A1YIY3 N/A
    143164 6x6m:A (1.9) BS07 CA ? N/A A1YIY3 N/A
    143165 6x6m:A (1.9) BS08 CA ? N/A A1YIY3 N/A
    143166 6x6m:A (1.9) BS09 CA ? N/A A1YIY3 N/A
    143167 6x6m:A (1.9) BS10 CA ? N/A A1YIY3 N/A
    143168 6x6m:A (1.9) BS11 CA ? N/A A1YIY3 N/A
    143169 6x6m:A (1.9) BS12 CA ? N/A A1YIY3 N/A
    143170 6x6m:A (1.9) BS13 CA ? N/A A1YIY3 N/A
    143171 6x6m:A (1.9) BS14 CA ? N/A A1YIY3 N/A
    143172 6x6m:A (1.9) BS15 CA ? N/A A1YIY3 N/A
    143173 6x6q:A (2.17) BS02 CA ? N/A A1YIY3 N/A
    143174 6x6q:A (2.17) BS03 CA ? N/A A1YIY3 N/A
    143175 6x6q:A (2.17) BS04 CA ? N/A A1YIY3 N/A
    143176 6x6q:A (2.17) BS05 CA ? N/A A1YIY3 N/A
    143177 6x6q:A (2.17) BS06 CA ? N/A A1YIY3 N/A
    143178 6x6q:A (2.17) BS07 CA ? N/A A1YIY3 N/A
    143179 6x6q:A (2.17) BS08 CA ? N/A A1YIY3 N/A
    143180 6x6q:A (2.17) BS09 CA ? N/A A1YIY3 N/A
    143181 6x6q:A (2.17) BS10 CA ? N/A A1YIY3 N/A
    143182 6x6q:A (2.17) BS11 CA ? N/A A1YIY3 N/A
    143183 6x6q:A (2.17) BS12 CA ? N/A A1YIY3 N/A
    143184 6x6q:A (2.17) BS13 CA ? N/A A1YIY3 N/A
    143185 6x6q:A (2.17) BS14 CA ? N/A A1YIY3 N/A
    143186 6x6q:A (2.17) BS15 CA ? N/A A1YIY3 N/A
    143187 6x6t:AE (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143188 6x6t:AE (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143189 6x6t:AE (3.2) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    143190 6x6u:A (1.944) BS03 MG 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    143191 6x6u:C (1.944) BS03 MG 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    143192 6x6x:A (1.71) BS01 ZN ? GO:0000166 ... Q9KH42 N/A
    143193 6x6x:B (1.71) BS01 ZN ? GO:0000166 ... Q9KH42 N/A
    143194 6x6x:B (1.71) BS02 ZN ? GO:0000166 ... Q9KH42 N/A
    143195 6x6z:A (1.4) BS03 CA 2.7.7.- GO:0003684 ... P12689 32999062
    143196 6x6z:A (1.4) BS04 CA 2.7.7.- GO:0003684 ... P12689 32999062
    143197 6x6z:A (1.4) BS06 CA 2.7.7.- GO:0003684 ... P12689 32999062
    143198 6x70:A (2.05) BS03 MG 2.7.7.- GO:0003684 ... P12689 32999062
    143199 6x71:A (1.78) BS03 MG 2.7.7.- GO:0003684 ... P12689 32999062
    143200 6x71:A (1.78) BS04 MG 2.7.7.- GO:0003684 ... P12689 32999062
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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