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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    142201 6wef:I (2.501) BS01 CU ? GO:0046872 ... A0A0H3PA01 32780051
    142202 6wef:J (2.501) BS01 CU ? GO:0046872 ... A0A0H3PA01 32780051
    142203 6wef:K (2.501) BS01 CU ? GO:0046872 ... A0A0H3PA01 32780051
    142204 6wef:L (2.501) BS01 CU ? GO:0046872 ... A0A0H3PA01 32780051
    142205 6wet:AaA (2.6) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142206 6wet:BaB (2.6) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142207 6weu:AbA (2.65) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142208 6weu:AbA (2.65) BS02 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142209 6weu:BbB (2.65) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142210 6weu:BbB (2.65) BS02 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142211 6wev:AbA (2.9) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142212 6wev:AbA (2.9) BS02 CA 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142213 6wev:BbB (2.9) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142214 6wev:BbB (2.9) BS02 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142215 6wew:AbA (2.73) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142216 6wew:AbA (2.73) BS02 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142217 6wew:BaB (2.73) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142218 6wf2:A (3.51) BS01 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    142219 6wf2:A (3.51) BS02 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    142220 6wf2:B (3.51) BS01 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    142221 6wf2:B (3.51) BS02 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    142222 6wf6:A (1.39) BS01 CO ? GO:0004493 ... Q9L2C2 34856049
    142223 6wf6:B (1.39) BS01 CO ? GO:0004493 ... Q9L2C2 34856049
    142224 6wfh:A (1.84) BS01 CO ? GO:0004493 ... Q9L2C2 34856049
    142225 6wfi:A (1.37) BS01 CO ? GO:0004493 ... Q9L2C2 34856049
    142226 6wfj:AcA (2.5) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142227 6wfj:AcA (2.5) BS02 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142228 6wfj:AcA (2.5) BS03 CA 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142229 6wfj:BcB (2.5) BS01 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142230 6wfj:BcB (2.5) BS02 ZN 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142231 6wfj:BcB (2.5) BS03 CA 3.1.4.1
    3.6.1.9
    GO:0003676 ... P22413 32876064
    142232 6wfv:A (1.7) BS01 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    N/A O60568 N/A
    142233 6wfv:A (1.7) BS02 MG 1.14.11.4
    2.4.1.50
    2.4.1.66
    N/A O60568 N/A
    142234 6wge:A (3.9) BS02 MG ? GO:0000070 ... Q14683 32409525
    142235 6wgi:A (10.0) BS02 MG ? GO:0003677 ... P54784 32669428
    142236 6wh3:1 (2.96) BS01 CA N/A N/A N/A 32747554
    142237 6wh3:2 (2.96) BS01 CA N/A N/A N/A 32747554
    142238 6wh3:3 (2.96) BS01 CA N/A N/A N/A 32747554
    142239 6wh3:4 (2.96) BS01 CA N/A N/A N/A 32747554
    142240 6wh3:5 (2.96) BS01 CA N/A N/A N/A 32747554
    142241 6wh3:6 (2.96) BS01 CA N/A N/A N/A 32747554
    142242 6wh3:7 (2.96) BS01 CA N/A N/A N/A 32747554
    142243 6wh3:8 (2.96) BS01 CA N/A N/A N/A 32747554
    142244 6wh3:A (2.96) BS01 CA N/A N/A N/A 32747554
    142245 6wh3:B (2.96) BS01 CA N/A N/A N/A 32747554
    142246 6wh3:C (2.96) BS01 CA N/A N/A N/A 32747554
    142247 6wh3:D (2.96) BS01 CA N/A N/A N/A 32747554
    142248 6wh3:E (2.96) BS01 CA N/A N/A N/A 32747554
    142249 6wh3:F (2.96) BS01 CA N/A N/A N/A 32747554
    142250 6wh3:G (2.96) BS01 CA N/A N/A N/A 32747554
    142251 6wh3:H (2.96) BS01 CA N/A N/A N/A 32747554
    142252 6wh3:I (2.96) BS01 CA N/A N/A N/A 32747554
    142253 6wh3:J (2.96) BS01 CA N/A N/A N/A 32747554
    142254 6wh3:K (2.96) BS01 CA N/A N/A N/A 32747554
    142255 6wh3:L (2.96) BS01 CA N/A N/A N/A 32747554
    142256 6wh3:M (2.96) BS01 CA N/A N/A N/A 32747554
    142257 6wh3:N (2.96) BS01 CA N/A N/A N/A 32747554
    142258 6wh3:O (2.96) BS01 CA N/A N/A N/A 32747554
    142259 6wh3:P (2.96) BS01 CA N/A N/A N/A 32747554
    142260 6wh3:Q (2.96) BS01 CA N/A N/A N/A 32747554
    142261 6wh3:R (2.96) BS01 CA N/A N/A N/A 32747554
    142262 6wh3:S (2.96) BS01 CA N/A N/A N/A 32747554
    142263 6wh3:T (2.96) BS01 CA N/A N/A N/A 32747554
    142264 6wh3:U (2.96) BS01 CA N/A N/A N/A 32747554
    142265 6wh3:V (2.96) BS01 CA N/A N/A N/A 32747554
    142266 6wh3:W (2.96) BS01 CA N/A N/A N/A 32747554
    142267 6wh3:X (2.96) BS01 CA N/A N/A N/A 32747554
    142268 6wh3:Y (2.96) BS01 CA N/A N/A N/A 32747554
    142269 6wh3:Z (2.96) BS01 CA N/A N/A N/A 32747554
    142270 6wh3:a (2.96) BS01 CA N/A N/A N/A 32747554
    142271 6wh3:b (2.96) BS01 CA N/A N/A N/A 32747554
    142272 6wh3:c (2.96) BS01 CA N/A N/A N/A 32747554
    142273 6wh3:d (2.96) BS01 CA N/A N/A N/A 32747554
    142274 6wh3:e (2.96) BS01 CA N/A N/A N/A 32747554
    142275 6wh3:f (2.96) BS01 CA N/A N/A N/A 32747554
    142276 6wh3:g (2.96) BS01 CA N/A N/A N/A 32747554
    142277 6wh3:h (2.96) BS01 CA N/A N/A N/A 32747554
    142278 6wh3:i (2.96) BS01 CA N/A N/A N/A 32747554
    142279 6wh3:j (2.96) BS01 CA N/A N/A N/A 32747554
    142280 6wh3:k (2.96) BS01 CA N/A N/A N/A 32747554
    142281 6wh3:l (2.96) BS01 CA N/A N/A N/A 32747554
    142282 6wh3:m (2.96) BS01 CA N/A N/A N/A 32747554
    142283 6wh3:n (2.96) BS01 CA N/A N/A N/A 32747554
    142284 6wh3:o (2.96) BS01 CA N/A N/A N/A 32747554
    142285 6wh3:p (2.96) BS01 CA N/A N/A N/A 32747554
    142286 6wh3:q (2.96) BS01 CA N/A N/A N/A 32747554
    142287 6wh3:r (2.96) BS01 CA N/A N/A N/A 32747554
    142288 6wh3:s (2.96) BS01 CA N/A N/A N/A 32747554
    142289 6wh3:t (2.96) BS01 CA N/A N/A N/A 32747554
    142290 6wh3:u (2.96) BS01 CA N/A N/A N/A 32747554
    142291 6wh3:v (2.96) BS01 CA N/A N/A N/A 32747554
    142292 6wh3:w (2.96) BS01 CA N/A N/A N/A 32747554
    142293 6wh3:x (2.96) BS01 CA N/A N/A N/A 32747554
    142294 6wh3:y (2.96) BS01 CA N/A N/A N/A 32747554
    142295 6wh3:z (2.96) BS01 CA N/A N/A N/A 32747554
    142296 6whe:A (1.73) BS02 MG 3.6.5.2 GO:0003924 ... P61006 33887226
    142297 6whe:B (1.73) BS02 MG 3.6.5.2 GO:0003924 ... P61006 33887226
    142298 6whg:A (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    142299 6whg:A (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    142300 6whg:B (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    142301 6whg:B (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    142302 6whg:C (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    142303 6whg:C (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    142304 6whg:D (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    142305 6whg:D (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    142306 6whm:A (1.92) BS02 MG ? GO:0003723 ... C6H0Y9 33469660
    142307 6whm:A (1.92) BS03 MN ? GO:0003723 ... C6H0Y9 33469660
    142308 6whm:A (1.92) BS04 MG ? GO:0003723 ... C6H0Y9 33469660
    142309 6whn:A (1.54) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142310 6whn:B (1.54) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142311 6whn:C (1.54) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142312 6who:A (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142313 6who:B (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142314 6who:C (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142315 6whq:A (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142316 6whq:B (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142317 6whq:C (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142318 6whz:A (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142319 6whz:B (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142320 6whz:C (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142321 6wi3:A (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142322 6wi3:B (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142323 6wi3:C (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    142324 6wi7:A (1.702) BS01 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142325 6wi7:A (1.702) BS02 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142326 6wi7:A (1.702) BS03 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142327 6wi7:A (1.702) BS04 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142328 6wi8:A (3.092) BS01 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142329 6wi8:A (3.092) BS02 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142330 6wi8:A (3.092) BS03 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142331 6wi8:A (3.092) BS04 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142332 6wi8:B (3.092) BS01 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142333 6wi8:B (3.092) BS02 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142334 6wi8:B (3.092) BS03 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142335 6wi8:B (3.092) BS04 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    142336 6wib:A (2.55) BS02 ZN ? N/A P01861 34497355
    142337 6wic:A (1.55) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    142338 6wic:A (1.55) BS07 MG 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    142339 6wid:A (1.5) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    142340 6wid:A (1.5) BS07 MG 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    142341 6wie:A (1.5) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    142342 6wie:A (1.5) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    142343 6wii:A (1.85) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 32663666
    142344 6wii:A (1.85) BS03 MN 3.6.1.54 GO:0005737 ... A6T5R0 32663666
    142345 6wij:A (2.44) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    142346 6wij:A (2.44) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    142347 6wis:A (2.0) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142348 6wis:A (2.0) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142349 6wis:A (2.0) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142350 6wis:A (2.0) BS04 CU ? GO:0046872 ... Q9HV84 32571874
    142351 6wis:A (2.0) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142352 6wis:A (2.0) BS06 ZN ? GO:0046872 ... Q9HV84 32571874
    142353 6wis:B (2.0) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142354 6wis:B (2.0) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142355 6wis:B (2.0) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142356 6wis:B (2.0) BS04 CU ? GO:0046872 ... Q9HV84 32571874
    142357 6wis:B (2.0) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142358 6wis:B (2.0) BS06 ZN ? GO:0046872 ... Q9HV84 32571874
    142359 6wj2:G (3.2) BS02 MG 3.6.5.- GO:0000287 ... Q9HB90 32868926
    142360 6wj4:A (2.55) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    142361 6wj4:A (2.55) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    142362 6wj6:A (2.58) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 N/A
    142363 6wj6:D (2.58) BS02 FE2 1.10.3.9 GO:0005506 ... P09192 N/A
    142364 6wjd:c (4.8) BS01 ZN 3.4.19.- GO:0000502 ... O00487 32783951
    142365 6wje:A (2.5) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142366 6wje:A (2.5) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142367 6wje:A (2.5) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142368 6wje:A (2.5) BS04 ZN ? GO:0046872 ... Q9HV84 32571874
    142369 6wje:A (2.5) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142370 6wje:B (2.5) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142371 6wje:B (2.5) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142372 6wje:B (2.5) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142373 6wje:B (2.5) BS04 ZN ? GO:0046872 ... Q9HV84 32571874
    142374 6wje:B (2.5) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142375 6wje:C (2.5) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142376 6wje:C (2.5) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142377 6wje:C (2.5) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142378 6wje:C (2.5) BS04 CU ? GO:0046872 ... Q9HV84 32571874
    142379 6wje:C (2.5) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142380 6wje:C (2.5) BS06 ZN ? GO:0046872 ... Q9HV84 32571874
    142381 6wje:D (2.5) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142382 6wje:D (2.5) BS02 ZN ? GO:0046872 ... Q9HV84 32571874
    142383 6wje:D (2.5) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142384 6wje:D (2.5) BS04 CU ? GO:0046872 ... Q9HV84 32571874
    142385 6wje:D (2.5) BS05 CU ? GO:0046872 ... Q9HV84 32571874
    142386 6wje:D (2.5) BS06 ZN ? GO:0046872 ... Q9HV84 32571874
    142387 6wje:E (2.5) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142388 6wje:E (2.5) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142389 6wje:E (2.5) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142390 6wje:E (2.5) BS04 ZN ? GO:0046872 ... Q9HV84 32571874
    142391 6wje:E (2.5) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142392 6wje:F (2.5) BS01 CU ? GO:0046872 ... Q9HV84 32571874
    142393 6wje:F (2.5) BS02 CU ? GO:0046872 ... Q9HV84 32571874
    142394 6wje:F (2.5) BS03 CU ? GO:0046872 ... Q9HV84 32571874
    142395 6wje:F (2.5) BS04 ZN ? GO:0046872 ... Q9HV84 32571874
    142396 6wje:F (2.5) BS05 ZN ? GO:0046872 ... Q9HV84 32571874
    142397 6wjj:A (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    142398 6wjj:A (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    142399 6wjj:B (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    142400 6wjj:B (3.8) BS02 CA ? GO:0005576 ... P13423 32521227

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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