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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    141401 6vi6:A (1.901) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141402 6vi7:A (2.617) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141403 6vi7:A (2.617) BS03 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141404 6vi8:A (1.95) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141405 6vi8:A (1.95) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141406 6vi9:A (2.31) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141407 6via:A (1.591) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141408 6via:A (1.591) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141409 6vib:A (1.84) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141410 6vib:A (1.84) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    141411 6vii:A (2.0) BS01 MG ? GO:0001779 ... Q9D4V7 32220963
    141412 6vii:B (2.0) BS01 MG ? GO:0001779 ... Q9D4V7 32220963
    141413 6vij:A (1.95) BS01 MG ? GO:0001779 ... Q9D4V7 32220963
    141414 6vij:B (1.95) BS01 MG ? GO:0001779 ... Q9D4V7 32220963
    141415 6vim:A (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141416 6vim:B (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141417 6vim:C (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141418 6vim:D (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141419 6vim:E (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141420 6vim:F (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141421 6vim:G (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141422 6vim:H (2.0) BS01 MG 5.1.2.2 GO:0000287 ... P11444 32786399
    141423 6viv:A (2.23) BS03 MN ? GO:0003723 ... C6H0Y9 36603507
    141424 6viv:A (2.23) BS04 MN ? GO:0003723 ... C6H0Y9 36603507
    141425 6vj3:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32044580
    141426 6vj7:A (2.6) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 32234228
    141427 6vj7:A (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    141428 6vj7:B (2.6) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 32234228
    141429 6vj7:B (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    141430 6vj7:C (2.6) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 32234228
    141431 6vj7:C (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    141432 6vj7:D (2.6) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 32234228
    141433 6vj7:D (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    141434 6vjb:A (2.24) BS01 CA 3.4.21.110 GO:0004252 ... Q9A180 32257048
    141435 6vjb:A (2.24) BS02 CA 3.4.21.110 GO:0004252 ... Q9A180 32257048
    141436 6vjb:A (2.24) BS03 CA 3.4.21.110 GO:0004252 ... Q9A180 32257048
    141437 6vjc:A (1.8) BS01 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    141438 6vjc:A (1.8) BS02 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    141439 6vjc:B (1.8) BS01 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    141440 6vjc:B (1.8) BS02 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    141441 6vjf:A (2.472) BS01 MG ? GO:0003924 ... G0SFF0 31981262
    141442 6vjf:B (2.472) BS01 MG ? GO:0003924 ... G0SFF0 31981262
    141443 6vjf:C (2.472) BS01 MG ? GO:0003924 ... G0SFF0 31981262
    141444 6vjf:D (2.472) BS01 MG ? GO:0003924 ... G0SFF0 31981262
    141445 6vjh:A (2.55) BS03 MN ? GO:0003723 ... C6H0Y9 36603507
    141446 6vjh:A (2.55) BS04 MN ? GO:0003723 ... C6H0Y9 36603507
    141447 6vji:A (2.54) BS01 ZN 4.2.99.18 GO:0003676 ... F7AMK3 32846144
    141448 6vji:B (2.54) BS01 ZN 4.2.99.18 GO:0003676 ... F7AMK3 32846144
    141449 6vjj:A (1.4) BS01 MG 3.6.5.2 GO:0003924 ... P01116 33608534
    141450 6vjr:A (1.55) BS03 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    141451 6vjr:B (1.55) BS03 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    141452 6vjr:C (1.55) BS04 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    141453 6vjr:D (1.55) BS04 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    141454 6vjs:D (4.02) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32886885
    141455 6vjs:D (4.02) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32886885
    141456 6vjs:D (4.02) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32886885
    141457 6vjs:I (4.02) BS01 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32886885
    141458 6vjs:I (4.02) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 32886885
    141459 6vjv:A (1.59) BS02 ZN ? GO:0009055 ... Q58M74 32434930
    141460 6vjv:A (1.59) BS03 ZN ? GO:0009055 ... Q58M74 32434930
    141461 6vjv:A (1.59) BS04 ZN ? GO:0009055 ... Q58M74 32434930
    141462 6vjv:A (1.59) BS05 ZN ? GO:0009055 ... Q58M74 32434930
    141463 6vjv:B (1.59) BS02 ZN ? GO:0009055 ... Q58M74 32434930
    141464 6vjv:B (1.59) BS03 ZN ? GO:0009055 ... Q58M74 32434930
    141465 6vjv:B (1.59) BS04 ZN ? GO:0009055 ... Q58M74 32434930
    141466 6vjv:B (1.59) BS05 ZN ? GO:0009055 ... Q58M74 32434930
    141467 6vjv:B (1.59) BS06 ZN ? GO:0009055 ... Q58M74 32434930
    141468 6vk4:A (2.35) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141469 6vk4:A (2.35) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141470 6vk4:E (2.35) BS01 FE2 1.14.13.25 GO:0004497 ... P27353 32692178
    141471 6vk4:E (2.35) BS02 FE2 1.14.13.25 GO:0004497 ... P27353 32692178
    141472 6vk5:A (1.86) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141473 6vk5:A (1.86) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141474 6vk5:E (1.86) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141475 6vk5:E (1.86) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141476 6vk6:A (1.52) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141477 6vk6:A (1.52) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141478 6vk7:A (2.12) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141479 6vk7:A (2.12) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141480 6vk8:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141481 6vk8:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141482 6vk8:E (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141483 6vk8:E (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    141484 6vkg:A (1.37) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32088421
    141485 6vkp:A (2.54) BS03 MG 2.7.7.7 GO:0000287 ... Q97W02 33881499
    141486 6vkp:A (2.54) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 33881499
    141487 6vkp:D (2.54) BS03 MG 2.7.7.7 GO:0000287 ... Q97W02 33881499
    141488 6vkp:D (2.54) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 33881499
    141489 6vkz:A (2.1) BS01 MG 2.5.1.- GO:0016036 ... A0A386KZ50 32457155
    141490 6vkz:A (2.1) BS02 MG 2.5.1.- GO:0016036 ... A0A386KZ50 32457155
    141491 6vl0:A (2.2) BS01 MN 2.5.1.- GO:0016036 ... A0A386KZ50 32457155
    141492 6vl0:A (2.2) BS03 MG 2.5.1.- GO:0016036 ... A0A386KZ50 32457155
    141493 6vl3:A (2.68) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    141494 6vl3:A (2.68) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    141495 6vl7:A (2.14) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141496 6vl7:B (2.14) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141497 6vl7:C (2.14) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141498 6vl7:D (2.14) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141499 6vll:A (2.87) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    141500 6vll:A (2.87) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    141501 6vlz:0 (2.97) BS02 ZN ? GO:0003723 ... Q9BYC8 32737313
    141502 6vlz:4 (2.97) BS02 ZN ? GO:0003735 ... Q9P0J6 32737313
    141503 6vlz:AP (2.97) BS02 ZN ? GO:0003735 ... Q9Y3D5 32737313
    141504 6vlz:F (2.97) BS02 MG ? GO:0003723 ... Q9BYD3 32737313
    141505 6vlz:v (2.97) BS03 MG ? GO:0003723 ... Q96RP9 32737313
    141506 6vmf:A (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141507 6vmf:B (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141508 6vmf:C (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141509 6vmf:D (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141510 6vmi:0 (2.96) BS02 ZN ? GO:0003723 ... Q9BYC8 32737313
    141511 6vmi:4 (2.96) BS02 ZN ? GO:0003735 ... Q9P0J6 32737313
    141512 6vmi:AB (2.96) BS02 ZN ? GO:0003735 ... Q9Y399 32737313
    141513 6vmi:F (2.96) BS02 MG ? GO:0003723 ... Q9BYD3 32737313
    141514 6vmi:v (2.96) BS04 MG ? GO:0003723 ... Q96RP9 32737313
    141515 6vmv:A (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141516 6vmv:B (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141517 6vmv:C (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141518 6vmv:D (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141519 6vmw:A (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141520 6vmw:B (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141521 6vmw:C (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141522 6vmw:D (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    141523 6vn6:A (2.99) BS02 ZN 3.4.19.12 GO:0004843 ... Q93009 32302140
    141524 6vn6:B (2.99) BS02 ZN 3.4.19.12 GO:0004843 ... Q93009 32302140
    141525 6vnp:A (2.42) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141526 6vnp:A (2.42) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141527 6vnp:D (2.42) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141528 6vnp:D (2.42) BS07 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141529 6vnp:G (2.42) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141530 6vnp:G (2.42) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141531 6vnp:J (2.42) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141532 6vnp:J (2.42) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 N/A
    141533 6vnq:A (2.05) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 32348628
    141534 6vnr:A (1.94301) BS01 ZN ? N/A F8W4B7 32348628
    141535 6vnr:B (1.94301) BS01 ZN ? N/A F8W4B7 32348628
    141536 6vo2:A (1.59) BS01 MG 1.1.1.86 GO:0000287 ... Q2FWK4 32198779
    141537 6vo2:B (1.59) BS03 MG 1.1.1.86 GO:0000287 ... Q2FWK4 32198779
    141538 6voq:A (2.49) BS01 ZN 4.1.2.-
    4.1.2.17
    GO:0005829 ... Q0QC76 N/A
    141539 6vow:A (1.92) BS01 CU N/A GO:0005507 ... N/A N/A
    141540 6vow:A (1.92) BS02 CU N/A GO:0005507 ... N/A N/A
    141541 6vox:A (3.8) BS01 CU ? GO:0005507 ... N/A N/A
    141542 6vox:A (3.8) BS02 CU ? GO:0005507 ... N/A N/A
    141543 6voy:A (3.7) BS06 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P14078
    P39476
    32561747
    141544 6voy:A (3.7) BS07 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P14078
    P39476
    32561747
    141545 6voy:B (3.7) BS02 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P14078
    P39476
    32561747
    141546 6voy:C (3.7) BS06 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P14078
    P39476
    32561747
    141547 6voy:D (3.7) BS02 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P14078
    P39476
    32561747
    141548 6vp4:A (1.83) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141549 6vp4:B (1.83) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141550 6vp4:C (1.83) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141551 6vp4:D (1.83) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141552 6vp5:A (1.97) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141553 6vp5:B (1.97) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141554 6vp5:C (1.97) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141555 6vp5:D (1.97) BS01 FE 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 33522811
    141556 6vpb:B (1.87) BS01 MG ? GO:0004616 ... A9H324 32621793
    141557 6vpc:F (3.2) BS02 ZN 3.5.4.33 GO:0002100 ... P68398 32732424
    141558 6vpi:A (2.0) BS02 MG 2.7.11.1 GO:0004672 ... O14965
    Q9ULW0
    32694171
    141559 6vpl:A (1.86) BS02 MG 2.7.11.1 GO:0000212 ... O14965
    Q9ULW0
    32694171
    141560 6vpl:B (1.86) BS01 MG 2.7.11.1 GO:0000212 ... O14965
    Q9ULW0
    32694171
    141561 6vpl:B (1.86) BS04 MG 2.7.11.1 GO:0000212 ... O14965
    Q9ULW0
    32694171
    141562 6vpm:A (1.58) BS03 MG 2.7.11.1 GO:0000212 ... O14965
    Q9ULW0
    32694171
    141563 6vpm:B (1.58) BS01 MG 2.7.11.1 GO:0000212 ... O14965
    Q9ULW0
    32694171
    141564 6vpp:A (4.4) BS02 MG 3.6.5.- GO:0000226 ... P02550 31958056
    141565 6vpq:A (1.74) BS01 MG ? GO:0001731 ... O43583 32257053
    141566 6vpq:A (1.74) BS02 MG ? GO:0001731 ... O43583 32257053
    141567 6vpq:B (1.74) BS01 MG ? GO:0001731 ... O43583 32257053
    141568 6vpq:B (1.74) BS02 MG ? GO:0001731 ... O43583 32257053
    141569 6vpq:B (1.74) BS03 MG ? GO:0001731 ... O43583 32257053
    141570 6vpq:B (1.74) BS04 MG ? GO:0001731 ... O43583 32257053
    141571 6vpq:C (1.74) BS01 MG ? GO:0001731 ... O43583 32257053
    141572 6vpq:E (1.74) BS01 MG ? GO:0001731 ... O43583 32257053
    141573 6vpq:E (1.74) BS02 MG ? GO:0001731 ... O43583 32257053
    141574 6vpq:F (1.74) BS01 MG ? GO:0001731 ... O43583 32257053
    141575 6vpq:F (1.74) BS02 MG ? GO:0001731 ... O43583 32257053
    141576 6vpq:F (1.74) BS03 MG ? GO:0001731 ... O43583 32257053
    141577 6vpq:F (1.74) BS04 MG ? GO:0001731 ... O43583 32257053
    141578 6vq6:C (3.9) BS02 MG 7.1.2.2 GO:0000221 ... D4A133 32165585
    141579 6vq9:C (3.6) BS02 MG 7.1.2.2 GO:0000221 ... D4A133 32165585
    141580 6vqp:A (2.0) BS02 MG ? GO:0046872 ... Q8KND1 N/A
    141581 6vqp:A (2.0) BS03 MG ? GO:0046872 ... Q8KND1 N/A
    141582 6vr7:A (2.5) BS01 ZN ? GO:0004326 ... E3GXV7 N/A
    141583 6vra:A (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141584 6vra:A (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141585 6vra:B (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141586 6vra:B (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141587 6vra:C (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141588 6vra:C (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141589 6vra:D (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141590 6vra:D (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141591 6vra:E (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141592 6vra:E (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141593 6vra:F (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141594 6vra:F (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141595 6vra:G (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141596 6vra:G (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141597 6vra:H (3.3) BS01 CA ? GO:0005576 ... P13423 32521227
    141598 6vra:H (3.3) BS02 CA ? GO:0005576 ... P13423 32521227
    141599 6vrf:A (1.5) BS02 MG 2.7.11.1 GO:0004672 ... Q6IQ55 32424773
    141600 6vrf:B (1.5) BS02 MG 2.7.11.1 GO:0004672 ... Q6IQ55 32424773

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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