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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    140601 6ux4:H (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    140602 6ux4:H (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    140603 6ux8:A (2.5) BS01 ZN ? GO:0007166 ... Q8NB16 32234780
    140604 6ux8:A (2.5) BS02 ZN ? GO:0007166 ... Q8NB16 32234780
    140605 6ux8:B (2.5) BS01 ZN N/A N/A N/A 32234780
    140606 6uxu:A (1.962) BS01 ZN 3.5.2.6 GO:0016787 ... E2JB04 32358058
    140607 6uxu:A (1.962) BS02 ZN 3.5.2.6 GO:0016787 ... E2JB04 32358058
    140608 6uxu:B (1.962) BS01 ZN 3.5.2.6 GO:0016787 ... E2JB04 32358058
    140609 6uxu:B (1.962) BS02 ZN 3.5.2.6 GO:0016787 ... E2JB04 32358058
    140610 6uy0:A (3.23) BS03 MG 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 32458799
    140611 6uy0:A (3.23) BS04 MG 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 32458799
    140612 6uz7:Bj (3.6) BS03 ZN ? GO:0003723 ... Q6CUW0 31900355
    140613 6uz7:Bm (3.6) BS02 ZN ? GO:0003735 ... Q9Y854 31900355
    140614 6uz7:a (3.6) BS02 ZN ? GO:0003729 ... Q6CS01 31900355
    140615 6uz7:b (3.6) BS02 ZN ? GO:0000028 ... Q6CNL2 31900355
    140616 6uzb:A (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140617 6uzb:A (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140618 6uzb:B (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140619 6uzb:B (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140620 6uzb:C (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140621 6uzb:C (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140622 6uzb:D (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140623 6uzb:D (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140624 6uzb:E (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140625 6uzb:E (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140626 6uzb:F (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140627 6uzb:F (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140628 6uzb:G (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    140629 6uzb:G (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    140630 6uzd:A (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140631 6uzd:A (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140632 6uzd:B (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140633 6uzd:B (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140634 6uzd:C (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140635 6uzd:C (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140636 6uzd:D (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140637 6uzd:D (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140638 6uzd:E (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140639 6uzd:E (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140640 6uzd:F (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140641 6uzd:F (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140642 6uzd:G (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140643 6uzd:G (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140644 6uze:A (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140645 6uze:A (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140646 6uze:B (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140647 6uze:B (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140648 6uze:C (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140649 6uze:C (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140650 6uze:D (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140651 6uze:D (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140652 6uze:E (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140653 6uze:E (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140654 6uze:F (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140655 6uze:F (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140656 6uze:G (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    140657 6uze:G (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    140658 6uzi:A (2.8) BS02 ZN 1.8.1.4 GO:0000166 ... A0A077ELH4 N/A
    140659 6uzi:B (2.8) BS01 ZN 1.8.1.4 GO:0000166 ... A0A077ELH4 N/A
    140660 6uzi:C (2.8) BS02 ZN 1.8.1.4 GO:0000166 ... A0A077ELH4 N/A
    140661 6uzi:D (2.8) BS01 ZN 1.8.1.4 GO:0000166 ... A0A077ELH4 N/A
    140662 6uzk:B (1.924) BS01 MG 3.6.5.2 GO:0003924 ... P61224 33977234
    140663 6uzu:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    140664 6uzv:0 (3.1) BS09 CA ? GO:0005886 ... P37277 33077842
    140665 6uzv:L (3.1) BS09 CA ? GO:0005886 ... P37277 33077842
    140666 6uzv:l (3.1) BS08 CA ? GO:0005886 ... P37277 33077842
    140667 6uzz:B (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140668 6uzz:B (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140669 6uzz:D (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140670 6uzz:D (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140671 6uzz:F (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140672 6uzz:F (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140673 6uzz:H (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140674 6uzz:H (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140675 6v00:B (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140676 6v00:B (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140677 6v00:E (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140678 6v00:E (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140679 6v00:H (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140680 6v00:H (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140681 6v00:K (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140682 6v00:K (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    140683 6v01:B (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140684 6v01:E (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140685 6v01:H (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140686 6v01:K (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    140687 6v0t:A (2.1) BS01 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    140688 6v0t:A (2.1) BS02 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    140689 6v0t:A (2.1) BS03 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    140690 6v0t:A (2.1) BS04 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    140691 6v0v:A (3.61) BS03 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 32015552
    140692 6v0v:A (3.61) BS04 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 32015552
    140693 6v0v:A (3.61) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 32015552
    140694 6v1m:A (1.05) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 32150407
    140695 6v1m:A (1.05) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 32150407
    140696 6v1o:A (1.8) BS02 MG 3.5.2.6 GO:0008658 ... Q6XEC0 32150407
    140697 6v1o:A (1.8) BS03 MG 3.5.2.6 GO:0008658 ... Q6XEC0 32150407
    140698 6v1o:B (1.8) BS02 MG 3.5.2.6 GO:0008658 ... Q6XEC0 32150407
    140699 6v1o:B (1.8) BS03 MG 3.5.2.6 GO:0008658 ... Q6XEC0 32150407
    140700 6v1o:C (1.8) BS02 MG 3.5.2.6 GO:0008658 ... Q6XEC0 32150407
    140701 6v1o:D (1.8) BS02 MG 3.5.2.6 GO:0008658 ... Q6XEC0 32150407
    140702 6v1p:A (1.2) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 32150407
    140703 6v1p:A (1.2) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 32150407
    140704 6v1p:B (1.2) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 32150407
    140705 6v1p:B (1.2) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 32150407
    140706 6v1q:A (3.11) BS01 NA ? GO:0001508 ... C4IXV6 31924746
    140707 6v1q:B (3.11) BS01 NA ? GO:0001508 ... C4IXV6 31924746
    140708 6v1s:A (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140709 6v1s:A (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    140710 6v1s:B (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140711 6v1s:B (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    140712 6v1s:C (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140713 6v1s:D (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140714 6v1s:D (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    140715 6v1s:E (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140716 6v1s:E (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    140717 6v1s:F (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140718 6v1s:F (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    140719 6v1s:G (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    140720 6v1s:G (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    140721 6v22:A (3.2) BS01 MG ? GO:0005216 ... Q12791 31815672
    140722 6v22:A (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    140723 6v22:A (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    140724 6v22:B (3.2) BS01 MG ? GO:0005216 ... Q12791 31815672
    140725 6v22:B (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    140726 6v22:B (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    140727 6v22:C (3.2) BS01 MG ? GO:0005216 ... Q12791 31815672
    140728 6v22:C (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    140729 6v22:C (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    140730 6v22:D (3.2) BS01 MG ? GO:0005216 ... Q12791 31815672
    140731 6v22:D (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    140732 6v22:D (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    140733 6v2k:E (2.6) BS03 MN ? GO:0000786 ... P68431 33580188
    140734 6v2l:A (1.7) BS03 MN 4.1.1.49 GO:0000287 ... P22259 31911238
    140735 6v2m:A (1.66) BS02 MG 4.1.1.49 GO:0000287 ... P22259 31911238
    140736 6v2m:A (1.66) BS03 CA 4.1.1.49 GO:0000287 ... P22259 31911238
    140737 6v2n:A (1.65) BS01 CA 4.1.1.49 GO:0000287 ... P22259 31911238
    140738 6v2w:A (3.12) BS02 MG 2.7.11.1 GO:0004672 ... P15056 34470822
    140739 6v2w:B (3.12) BS02 MG 2.7.12.2 GO:0000165 ... Q02750 34470822
    140740 6v36:A (3.4) BS01 K ? GO:0005267 ... P97438 32059793
    140741 6v36:A (3.4) BS02 K ? GO:0005267 ... P97438 32059793
    140742 6v36:A (3.4) BS03 K ? GO:0005267 ... P97438 32059793
    140743 6v36:A (3.4) BS04 K ? GO:0005267 ... P97438 32059793
    140744 6v36:B (3.4) BS01 K ? GO:0005267 ... P97438 32059793
    140745 6v36:B (3.4) BS02 K ? GO:0005267 ... P97438 32059793
    140746 6v36:B (3.4) BS03 K ? GO:0005267 ... P97438 32059793
    140747 6v36:B (3.4) BS04 K ? GO:0005267 ... P97438 32059793
    140748 6v37:A (2.8) BS02 K ? GO:0005267 ... P97438 32059793
    140749 6v37:A (2.8) BS03 K ? GO:0005267 ... P97438 32059793
    140750 6v37:A (2.8) BS04 K ? GO:0005267 ... P97438 32059793
    140751 6v37:A (2.8) BS05 K ? GO:0005267 ... P97438 32059793
    140752 6v37:B (2.8) BS01 K ? GO:0005267 ... P97438 32059793
    140753 6v37:B (2.8) BS02 K ? GO:0005267 ... P97438 32059793
    140754 6v37:B (2.8) BS03 K ? GO:0005267 ... P97438 32059793
    140755 6v37:B (2.8) BS05 K ? GO:0005267 ... P97438 32059793
    140756 6v38:A (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    140757 6v38:A (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    140758 6v38:B (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    140759 6v38:B (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    140760 6v38:C (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    140761 6v38:C (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    140762 6v38:D (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    140763 6v38:D (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    140764 6v39:3 (3.04) BS02 ZN ? GO:0003735 ... A0A1Y3CHB1 31964740
    140765 6v3c:A (3.51) BS01 K ? GO:0005267 ... P97438 32059793
    140766 6v3c:A (3.51) BS02 K ? GO:0005267 ... P97438 32059793
    140767 6v3c:A (3.51) BS03 K ? GO:0005267 ... P97438 32059793
    140768 6v3c:A (3.51) BS04 K ? GO:0005267 ... P97438 32059793
    140769 6v3c:B (3.51) BS01 K ? GO:0005267 ... P97438 32059793
    140770 6v3c:B (3.51) BS02 K ? GO:0005267 ... P97438 32059793
    140771 6v3c:B (3.51) BS03 K ? GO:0005267 ... P97438 32059793
    140772 6v3c:B (3.51) BS04 K ? GO:0005267 ... P97438 32059793
    140773 6v3d:3 (2.95) BS02 ZN ? GO:0003735 ... A0A1Y3CHB1 31964740
    140774 6v3i:A (3.4) BS01 K ? GO:0005267 ... P97438 32059793
    140775 6v3i:A (3.4) BS02 K ? GO:0005267 ... P97438 32059793
    140776 6v3i:A (3.4) BS03 K ? GO:0005267 ... P97438 32059793
    140777 6v3i:A (3.4) BS04 K ? GO:0005267 ... P97438 32059793
    140778 6v3i:B (3.4) BS01 K ? GO:0005267 ... P97438 32059793
    140779 6v3i:B (3.4) BS02 K ? GO:0005267 ... P97438 32059793
    140780 6v3i:B (3.4) BS03 K ? GO:0005267 ... P97438 32059793
    140781 6v3i:B (3.4) BS04 K ? GO:0005267 ... P97438 32059793
    140782 6v3k:A (3.4) BS03 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P39476    		 32001521
    140783 6v3k:A (3.4) BS04 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P39476    		 32001521
    140784 6v3k:A (3.4) BS05 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P39476    		 32001521
    140785 6v3k:B (3.4) BS01 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P39476    		 32001521
    140786 6v3m:A (1.55) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    140787 6v3m:B (1.55) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    140788 6v3m:C (1.55) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    140789 6v3q:A (2.4) BS01 ZN 3.5.2.6 GO:0016787 ... K7SA42 N/A
    140790 6v3q:B (2.4) BS01 ZN 3.5.2.6 GO:0016787 ... K7SA42 N/A
    140791 6v3u:A (2.0) BS01 ZN 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140792 6v3u:B (2.0) BS01 ZN 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140793 6v4c:A (1.97) BS02 ZN ? GO:0005524 ... A0A1S4K3K8 32518308
    140794 6v4n:I (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140795 6v4n:M (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140796 6v4n:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140797 6v4n:W (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140798 6v4o:I (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140799 6v4o:M (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140800 6v4o:N (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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