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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    140201 6utv:DDD (3.45) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140202 6utv:DDD (3.45) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140203 6utw:DDD (3.854) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140204 6utw:DDD (3.854) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140205 6utw:DDD (3.854) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140206 6utx:DDD (4.05) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140207 6utx:DDD (4.05) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140208 6utx:DDD (4.05) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140209 6uty:DDD (4.15) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140210 6uty:DDD (4.15) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140211 6uty:DDD (4.15) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140212 6uty:DDD (4.15) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140213 6utz:DDD (3.803) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140214 6utz:DDD (3.803) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140215 6utz:DDD (3.803) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140216 6uu0:DDD (3.9) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140217 6uu0:DDD (3.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140218 6uu0:DDD (3.9) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140219 6uu1:DDD (4.097) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140220 6uu1:DDD (4.097) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140221 6uu1:DDD (4.097) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140222 6uu1:DDD (4.097) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140223 6uu2:DDD (4.404) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140224 6uu2:DDD (4.404) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140225 6uu2:DDD (4.404) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140226 6uu3:DDD (4.002) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140227 6uu3:DDD (4.002) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140228 6uu3:DDD (4.002) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140229 6uu3:DDD (4.002) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140230 6uu4:DDD (4.305) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140231 6uu4:DDD (4.305) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140232 6uu4:DDD (4.305) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140233 6uu5:DDD (5.403) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140234 6uu5:DDD (5.403) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140235 6uu5:DDD (5.403) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140236 6uu6:DDD (4.201) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140237 6uu6:DDD (4.201) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140238 6uu6:DDD (4.201) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140239 6uu7:DDD (4.4) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140240 6uu7:DDD (4.4) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140241 6uu7:DDD (4.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140242 6uu7:DDD (4.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140243 6uu8:DDD (4.4) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140244 6uu8:DDD (4.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140245 6uu8:DDD (4.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140246 6uu9:DDD (5.4) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140247 6uu9:DDD (5.4) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140248 6uu9:DDD (5.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140249 6uua:DDD (4.002) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140250 6uua:DDD (4.002) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140251 6uua:DDD (4.002) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140252 6uua:DDD (4.002) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140253 6uub:DDD (3.955) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140254 6uub:DDD (3.955) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140255 6uub:DDD (3.955) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140256 6uuc:DDD (4.096) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140257 6uuc:DDD (4.096) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140258 6uuc:DDD (4.096) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    140259 6uuq:A (1.849) BS02 ZN 3.1.3.16 GO:0016787 ... Q08209 32936779
    140260 6uuq:A (1.849) BS03 FE 3.1.3.16 GO:0016787 ... Q08209 32936779
    140261 6uuy:B (1.37) BS03 CA 2.8.2.- GO:0046872 ... A0A094ZWQ2 32027942
    140262 6uv1:A (2.307) BS04 MG 3.6.4.13 GO:0003676 ... Q92841 31851931
    140263 6uv2:A (1.894) BS04 MG 3.6.4.13 GO:0003676 ... Q92841 31851931
    140264 6uv2:A (1.894) BS05 MG 3.6.4.13 GO:0003676 ... Q92841 31851931
    140265 6uv2:A (1.894) BS06 MG 3.6.4.13 GO:0003676 ... Q92841 31851931
    140266 6uvn:I (3.1) BS01 ZN N/A N/A N/A 31900425
    140267 6uvn:J (3.1) BS01 ZN N/A N/A N/A 31900425
    140268 6uvw:A (2.551) BS03 CA N/A GO:0004519 ... N/A 32359399
    140269 6uvw:A (2.551) BS04 CA N/A GO:0004519 ... N/A 32359399
    140270 6uvw:A (2.551) BS05 CA N/A GO:0004519 ... N/A 32359399
    140271 6uvw:D (2.551) BS03 CA N/A GO:0004519 ... N/A 32359399
    140272 6uvw:D (2.551) BS04 CA N/A GO:0004519 ... N/A 32359399
    140273 6uvx:B (2.3) BS01 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140274 6uw0:A (2.72) BS03 CA N/A GO:0004519 ... N/A 32359399
    140275 6uw0:A (2.72) BS04 CA N/A GO:0004519 ... N/A 32359399
    140276 6uw0:B (2.72) BS03 CA N/A GO:0004519 ... N/A 32359399
    140277 6uw0:B (2.72) BS04 CA N/A GO:0004519 ... N/A 32359399
    140278 6uw1:B (2.205) BS02 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140279 6uw3:B (2.4) BS02 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140280 6uw3:B (2.4) BS03 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140281 6uw5:B (2.2) BS03 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140282 6uw5:B (2.2) BS04 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140283 6uw7:B (2.342) BS02 CA 2.7.8.28 GO:0000287 ... A0QTG2 32430409
    140284 6uwa:A (1.2) BS01 ZN 2.7.11.13 N/A Q4VA93 N/A
    140285 6uwa:A (1.2) BS02 ZN 2.7.11.13 N/A Q4VA93 N/A
    140286 6uwe:A (1.6) BS01 CU ? N/A W0DP94 32094184
    140287 6uwe:A (1.6) BS02 CU ? N/A W0DP94 32094184
    140288 6uwe:A (1.6) BS03 CU ? N/A W0DP94 32094184
    140289 6uwe:A (1.6) BS04 CU ? N/A W0DP94 32094184
    140290 6uwe:B (1.6) BS01 CU ? N/A W0DP94 32094184
    140291 6uwe:B (1.6) BS02 CU ? N/A W0DP94 32094184
    140292 6uwe:B (1.6) BS03 CU ? N/A W0DP94 32094184
    140293 6uwe:B (1.6) BS04 CU ? N/A W0DP94 32094184
    140294 6uwe:C (1.6) BS01 CU ? N/A W0DP94 32094184
    140295 6uwe:C (1.6) BS02 CU ? N/A W0DP94 32094184
    140296 6uwe:C (1.6) BS03 CU ? N/A W0DP94 32094184
    140297 6uwe:C (1.6) BS04 CU ? N/A W0DP94 32094184
    140298 6uwe:D (1.6) BS01 CU ? N/A W0DP94 32094184
    140299 6uwe:D (1.6) BS02 CU ? N/A W0DP94 32094184
    140300 6uwe:D (1.6) BS03 CU ? N/A W0DP94 32094184
    140301 6uwe:D (1.6) BS04 CU ? N/A W0DP94 32094184
    140302 6uwg:A (2.22) BS03 CA N/A GO:0004519 ... N/A 32359399
    140303 6uwg:A (2.22) BS04 CA N/A GO:0004519 ... N/A 32359399
    140304 6uwg:A (2.22) BS05 CA N/A GO:0004519 ... N/A 32359399
    140305 6uwg:A (2.22) BS06 CA N/A GO:0004519 ... N/A 32359399
    140306 6uwh:A (2.299) BS03 CA N/A GO:0004519 ... N/A 32359399
    140307 6uwh:A (2.299) BS04 CA N/A GO:0004519 ... N/A 32359399
    140308 6uwh:A (2.299) BS05 CA N/A GO:0004519 ... N/A 32359399
    140309 6uwh:A (2.299) BS06 CA N/A GO:0004519 ... N/A 32359399
    140310 6uwi:A (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140311 6uwi:A (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140312 6uwi:A (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140313 6uwi:A (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140314 6uwi:A (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140315 6uwi:A (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140316 6uwi:B (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140317 6uwi:B (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140318 6uwi:B (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140319 6uwi:B (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140320 6uwi:B (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140321 6uwi:B (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140322 6uwi:C (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140323 6uwi:C (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140324 6uwi:C (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140325 6uwi:C (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140326 6uwi:C (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140327 6uwi:C (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140328 6uwi:D (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140329 6uwi:D (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140330 6uwi:D (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140331 6uwi:D (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140332 6uwi:D (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140333 6uwi:D (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140334 6uwi:E (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140335 6uwi:E (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140336 6uwi:E (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140337 6uwi:E (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140338 6uwi:E (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140339 6uwi:E (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140340 6uwi:F (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140341 6uwi:F (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140342 6uwi:F (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140343 6uwi:F (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140344 6uwi:F (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140345 6uwi:F (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140346 6uwi:G (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140347 6uwi:G (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140348 6uwi:G (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140349 6uwi:G (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140350 6uwi:G (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140351 6uwi:G (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140352 6uwi:H (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140353 6uwi:H (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140354 6uwi:H (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140355 6uwi:H (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140356 6uwi:H (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140357 6uwi:H (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140358 6uwi:I (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140359 6uwi:I (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140360 6uwi:I (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140361 6uwi:I (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140362 6uwi:I (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140363 6uwi:I (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140364 6uwi:J (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140365 6uwi:J (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140366 6uwi:J (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140367 6uwi:J (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140368 6uwi:J (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140369 6uwi:J (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140370 6uwi:K (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140371 6uwi:K (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140372 6uwi:K (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140373 6uwi:K (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140374 6uwi:K (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140375 6uwi:K (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140376 6uwi:L (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140377 6uwi:L (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140378 6uwi:L (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140379 6uwi:L (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140380 6uwi:L (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140381 6uwi:L (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140382 6uwi:M (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140383 6uwi:M (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140384 6uwi:M (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140385 6uwi:M (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140386 6uwi:M (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140387 6uwi:M (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140388 6uwi:N (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140389 6uwi:N (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140390 6uwi:N (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140391 6uwi:N (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140392 6uwi:N (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140393 6uwi:N (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140394 6uwi:a (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    140395 6uwi:a (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    140396 6uwi:a (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    140397 6uwi:a (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    140398 6uwi:a (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    140399 6uwi:a (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    140400 6uwi:b (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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