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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    139201 6twt:B (0.95) BS04 CA 3.5.2.6 GO:0008270 ... C7C422 32353499
    139202 6twu:A (2.4) BS01 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139203 6twu:A (2.4) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139204 6twu:A (2.4) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139205 6twu:A (2.4) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139206 6twu:B (2.4) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139207 6twu:B (2.4) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139208 6twu:B (2.4) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139209 6twu:B (2.4) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139210 6tww:A (1.38) BS01 MG N/A GO:0008800 ... N/A 32832059
    139211 6twx:A (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139212 6twx:A (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139213 6twx:A (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139214 6twx:A (2.3) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139215 6twx:A (2.3) BS06 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139216 6twx:B (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139217 6twx:B (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139218 6twx:B (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139219 6twx:B (2.3) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139220 6twx:B (2.3) BS06 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139221 6twx:B (2.3) BS07 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139222 6twy:A (2.3) BS01 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139223 6twy:A (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139224 6twy:A (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139225 6twy:A (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139226 6twy:B (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139227 6twy:B (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139228 6twy:B (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139229 6twy:B (2.3) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    139230 6tx0:A (2.01) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139231 6tx0:A (2.01) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139232 6tx0:B (2.01) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139233 6tx0:B (2.01) BS05 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139234 6txa:A (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139235 6txa:A (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139236 6txa:B (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139237 6txa:B (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139238 6txa:C (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139239 6txa:C (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139240 6txa:D (2.853) BS06 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139241 6txa:D (2.853) BS07 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139242 6txa:E (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139243 6txa:E (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139244 6txa:F (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139245 6txa:F (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139246 6txa:G (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139247 6txa:G (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139248 6txa:H (2.853) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139249 6txa:H (2.853) BS05 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139250 6txa:I (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139251 6txa:I (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139252 6txa:J (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139253 6txa:J (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139254 6txa:K (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139255 6txa:K (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139256 6txa:L (2.853) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139257 6txa:L (2.853) BS06 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139258 6txa:M (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139259 6txa:M (2.853) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139260 6txa:N (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139261 6txa:N (2.853) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139262 6txa:O (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139263 6txa:O (2.853) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139264 6txa:P (2.853) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139265 6txa:P (2.853) BS05 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139266 6txc:A (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139267 6txc:B (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139268 6txc:B (2.84) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139269 6txc:C (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139270 6txc:D (2.84) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139271 6txc:E (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139272 6txc:F (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139273 6txc:G (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139274 6txc:G (2.84) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139275 6txc:H (2.84) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139276 6txc:I (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139277 6txc:I (2.84) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139278 6txc:J (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139279 6txc:K (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139280 6txc:K (2.84) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139281 6txc:L (2.84) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139282 6txc:L (2.84) BS06 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139283 6txc:M (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139284 6txc:M (2.84) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139285 6txc:N (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139286 6txc:O (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139287 6txc:P (2.84) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139288 6txc:P (2.84) BS06 MG 3.1.5.- N/A Q9Y3Z3 32576829
    139289 6txe:A (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139290 6txe:B (3.19) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139291 6txe:C (3.19) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139292 6txe:D (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139293 6txe:E (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139294 6txe:F (3.19) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139295 6txe:G (3.19) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139296 6txe:H (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139297 6txe:I (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139298 6txe:J (3.19) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139299 6txe:K (3.19) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139300 6txe:L (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139301 6txe:M (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139302 6txe:N (3.19) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139303 6txe:O (3.19) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139304 6txe:P (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139305 6txf:A (2.25) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139306 6txf:A (2.25) BS02 MN 3.1.5.- N/A Q9Y3Z3 32576829
    139307 6txf:B (2.25) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    139308 6txf:B (2.25) BS05 MN 3.1.5.- N/A Q9Y3Z3 32576829
    139309 6txg:A (1.372) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32266561
    139310 6txi:A (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139311 6txi:B (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139312 6txi:C (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139313 6txi:D (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139314 6txi:E (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139315 6txi:F (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139316 6txi:G (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139317 6txi:H (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139318 6txj:A (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139319 6txj:B (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139320 6txj:C (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139321 6txj:D (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139322 6txj:E (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139323 6txj:F (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139324 6txj:G (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139325 6txj:H (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139326 6txk:A (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139327 6txk:B (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139328 6txk:C (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139329 6txk:D (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139330 6txk:E (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139331 6txk:F (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139332 6txk:G (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139333 6txk:H (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139334 6txl:A (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139335 6txl:B (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139336 6txl:C (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139337 6txl:D (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139338 6txl:E (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139339 6txl:F (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139340 6txl:G (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139341 6txl:H (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139342 6txn:A (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139343 6txn:B (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139344 6txn:C (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139345 6txn:D (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139346 6txn:E (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139347 6txn:F (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139348 6txn:G (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139349 6txn:H (2.01) BS01 MG 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    139350 6ty0:A (2.1) BS01 ZN ? N/A Q709H6 35798161
    139351 6ty0:B (2.1) BS01 ZN ? N/A Q709H6 35798161
    139352 6ty2:A (1.98) BS01 ZN ? N/A Q709H6 35798161
    139353 6ty2:B (1.98) BS01 ZN ? N/A Q709H6 35798161
    139354 6ty9:A (2.9) BS04 MG ? GO:0001172 ... Q993A4 31695188
    139355 6ty9:A (2.9) BS05 MG ? GO:0001172 ... Q993A4 31695188
    139356 6tyj:A (1.6) BS01 ZN ? GO:0046872 ... A0A1V3WIE5 N/A
    139357 6tyj:A (1.6) BS02 ZN ? GO:0046872 ... A0A1V3WIE5 N/A
    139358 6tyj:A (1.6) BS03 ZN ? GO:0046872 ... A0A1V3WIE5 N/A
    139359 6tyr:A (1.813) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 33962016
    139360 6tyr:A (1.813) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 33962016
    139361 6tyr:A (1.813) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 33962016
    139362 6tz2:A (3.5) BS06 MG 2.7.7.48 GO:0001172 ... Q993A4 31695188
    139363 6tz6:A (2.55) BS01 ZN 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    139364 6tz6:A (2.55) BS02 FE 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    139365 6tz6:B (2.55) BS01 CA ? GO:0005509 ... C4YS24 31537789
    139366 6tz6:B (2.55) BS02 CA ? GO:0005509 ... C4YS24 31537789
    139367 6tz6:B (2.55) BS03 CA ? GO:0005509 ... C4YS24 31537789
    139368 6tz6:D (2.55) BS01 ZN 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    139369 6tz6:D (2.55) BS02 FE 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    139370 6tz6:E (2.55) BS01 CA ? GO:0005509 ... C4YS24 31537789
    139371 6tz6:E (2.55) BS02 CA ? GO:0005509 ... C4YS24 31537789
    139372 6tz6:E (2.55) BS03 CA ? GO:0005509 ... C4YS24 31537789
    139373 6tz6:E (2.55) BS04 CA ? GO:0005509 ... C4YS24 31537789
    139374 6tz7:A (2.5) BS01 ZN 3.1.3.16 GO:0016787 ... Q4WUR1 31537789
    139375 6tz7:A (2.5) BS02 FE 3.1.3.16 GO:0016787 ... Q4WUR1 31537789
    139376 6tz7:B (2.5) BS01 CA ? GO:0000747 ... Q4WDF2 31537789
    139377 6tz7:B (2.5) BS02 CA ? GO:0000747 ... Q4WDF2 31537789
    139378 6tz7:B (2.5) BS03 CA ? GO:0000747 ... Q4WDF2 31537789
    139379 6tz8:A (3.3) BS01 FE 3.1.3.16 GO:0016787 ... O42773 31537789
    139380 6tz8:A (3.3) BS02 ZN 3.1.3.16 GO:0016787 ... O42773 31537789
    139381 6tz8:B (3.3) BS01 CA ? GO:0005509 ... J9VL81 31537789
    139382 6tz8:B (3.3) BS02 CA ? GO:0005509 ... J9VL81 31537789
    139383 6tz8:B (3.3) BS03 CA ? GO:0005509 ... J9VL81 31537789
    139384 6tz8:B (3.3) BS04 CA ? GO:0005509 ... J9VL81 31537789
    139385 6tz8:D (3.3) BS01 FE 3.1.3.16 GO:0016787 ... O42773 31537789
    139386 6tz8:D (3.3) BS02 ZN 3.1.3.16 GO:0016787 ... O42773 31537789
    139387 6tz8:E (3.3) BS01 CA ? GO:0005509 ... J9VL81 31537789
    139388 6tz8:E (3.3) BS02 CA ? GO:0005509 ... J9VL81 31537789
    139389 6tz8:E (3.3) BS03 CA ? GO:0005509 ... J9VL81 31537789
    139390 6tz8:E (3.3) BS04 CA ? GO:0005509 ... J9VL81 31537789
    139391 6tzk:A (1.852) BS02 CA ? GO:0019867 ... P37650 31604608
    139392 6tzp:A (1.72) BS01 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    139393 6tzp:A (1.72) BS02 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    139394 6tzy:A (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    139395 6tzy:B (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    139396 6tzy:B (3.0) BS02 CA ? GO:0008195 ... I7MFJ3 N/A
    139397 6tzy:C (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    139398 6tzy:D (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    139399 6tzz:A (3.0) BS01 MG ? GO:0008195 ... I7MFJ3 N/A
    139400 6tzz:B (3.0) BS01 MG ? GO:0008195 ... I7MFJ3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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