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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    139001 6tsd:111 (1.81) BS03 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... V9VEF3 32845119
    139002 6tsd:444 (1.81) BS01 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... V9VEF3 32845119
    139003 6tse:A (1.41) BS04 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139004 6tse:B (1.41) BS03 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139005 6tsf:AAA (2.09) BS01 FE ? GO:0005506 ... P02792 32027764
    139006 6tsf:AAA (2.09) BS02 FE ? GO:0005506 ... P02792 32027764
    139007 6tsf:AAA (2.09) BS03 FE ? GO:0005506 ... P02792 32027764
    139008 6tsf:AAA (2.09) BS04 FE ? GO:0005506 ... P02792 32027764
    139009 6tsf:AAA (2.09) BS05 FE ? GO:0005506 ... P02792 32027764
    139010 6tsf:AAA (2.09) BS06 FE ? GO:0005506 ... P02792 32027764
    139011 6tsf:AAA (2.09) BS07 FE ? GO:0005506 ... P02792 32027764
    139012 6tsh:A (2.3) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139013 6tsh:B (2.3) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139014 6tsh:C (2.3) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139015 6tsh:D (2.3) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139016 6tsj:AAA (2.3) BS01 FE ? GO:0005506 ... P02792 32027764
    139017 6tsj:AAA (2.3) BS02 FE ? GO:0005506 ... P02792 32027764
    139018 6tsj:AAA (2.3) BS03 FE ? GO:0005506 ... P02792 32027764
    139019 6tsj:AAA (2.3) BS04 FE ? GO:0005506 ... P02792 32027764
    139020 6tsj:AAA (2.3) BS05 FE ? GO:0005506 ... P02792 32027764
    139021 6tsk:A (2.3) BS01 MG 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    139022 6tsk:B (2.3) BS01 MG 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    139023 6tsk:C (2.3) BS01 MG 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    139024 6tsk:D (2.3) BS01 MG 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    139025 6tsl:AAA (1.4) BS06 CA ? GO:0046872 ... Q8X123 34235469
    139026 6tsl:AAA (1.4) BS07 CA ? GO:0046872 ... Q8X123 34235469
    139027 6tsm:AAA (1.4) BS06 CA ? GO:0046872 ... Q8X123 34235469
    139028 6tsm:AAA (1.4) BS07 CA ? GO:0046872 ... Q8X123 34235469
    139029 6tsn:AAA (1.6) BS07 CA ? GO:0046872 ... Q8X123 34235469
    139030 6tsn:AAA (1.6) BS08 CA ? GO:0046872 ... Q8X123 34235469
    139031 6tso:AAA (2.1) BS07 CA ? GO:0046872 ... Q8X123 34235469
    139032 6tso:AAA (2.1) BS08 CA ? GO:0046872 ... Q8X123 34235469
    139033 6tso:AAA (2.1) BS09 CD ? GO:0046872 ... Q8X123 34235469
    139034 6tso:AAA (2.1) BS10 CD ? GO:0046872 ... Q8X123 34235469
    139035 6tsp:AAA (1.85) BS07 CA ? GO:0046872 ... Q8X123 N/A
    139036 6tsp:AAA (1.85) BS08 CA ? GO:0046872 ... Q8X123 N/A
    139037 6tsp:AAA (1.85) BS09 ZN ? GO:0046872 ... Q8X123 N/A
    139038 6tsp:AAA (1.85) BS10 ZN ? GO:0046872 ... Q8X123 N/A
    139039 6tsp:AAA (1.85) BS11 ZN ? GO:0046872 ... Q8X123 N/A
    139040 6tsq:AAA (1.85) BS07 MN ? GO:0046872 ... Q8X123 34235469
    139041 6tsq:AAA (1.85) BS08 MN ? GO:0046872 ... Q8X123 34235469
    139042 6tsq:AAA (1.85) BS09 CA ? GO:0046872 ... Q8X123 34235469
    139043 6tsq:AAA (1.85) BS10 MN ? GO:0046872 ... Q8X123 34235469
    139044 6tsr:AAA (1.85) BS07 CA ? GO:0046872 ... Q8X123 34235469
    139045 6tsr:AAA (1.85) BS08 CA ? GO:0046872 ... Q8X123 34235469
    139046 6tsr:AAA (1.85) BS09 MN ? GO:0046872 ... Q8X123 34235469
    139047 6tsr:AAA (1.85) BS10 MN ? GO:0046872 ... Q8X123 34235469
    139048 6tss:AAA (2.18) BS01 FE ? GO:0005506 ... P02791 32027764
    139049 6tss:AAA (2.18) BS02 FE ? GO:0005506 ... P02791 32027764
    139050 6tss:AAA (2.18) BS03 FE ? GO:0005506 ... P02791 32027764
    139051 6tss:AAA (2.18) BS04 FE ? GO:0005506 ... P02791 32027764
    139052 6tss:AAA (2.18) BS05 FE ? GO:0005506 ... P02791 32027764
    139053 6tsx:AAA (2.021) BS02 FE ? GO:0005506 ... P02791 32027764
    139054 6tsx:AAA (2.021) BS03 FE ? GO:0005506 ... P02791 32027764
    139055 6tsx:AAA (2.021) BS04 FE ? GO:0005506 ... P02791 32027764
    139056 6tsx:AAA (2.021) BS05 FE ? GO:0005506 ... P02791 32027764
    139057 6tsx:AAA (2.021) BS06 FE ? GO:0005506 ... P02791 32027764
    139058 6tsx:AAA (2.021) BS07 FE ? GO:0005506 ... P02791 32027764
    139059 6tsx:AAA (2.021) BS08 FE ? GO:0005506 ... P02791 32027764
    139060 6tt1:A (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 32195541
    139061 6tt1:B (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 32195541
    139062 6tt2:A (1.36) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139063 6tt2:B (1.36) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139064 6tt3:A (1.7) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 32195541
    139065 6tt3:B (1.7) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 32195541
    139066 6tt4:A (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 32195541
    139067 6tt4:B (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 32195541
    139068 6tt5:AAA (1.5) BS01 ZN 3.1.-.- N/A Q96SD1 34387696
    139069 6tt5:AAA (1.5) BS02 ZN 3.1.-.- N/A Q96SD1 34387696
    139070 6tt7:B (3.5) BS01 MG N/A GO:0005524 ... N/A 32929284
    139071 6tt7:C (3.5) BS01 MG N/A GO:0005524 ... N/A 32929284
    139072 6tt8:A (-1.00) BS01 ZN 3.5.2.6 N/A E9NWK5 32426604
    139073 6tt8:A (-1.00) BS02 ZN 3.5.2.6 N/A E9NWK5 32426604
    139074 6tt9:AAA (1.9) BS01 CA ? GO:0030246 ... Q40750 32340396
    139075 6tt9:AAA (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    139076 6tt9:BBB (1.9) BS01 CA ? GO:0030246 ... Q40750 32340396
    139077 6tt9:BBB (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    139078 6tt9:CCC (1.9) BS01 CA ? GO:0030246 ... Q40750 32340396
    139079 6tt9:CCC (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    139080 6tt9:DDD (1.9) BS01 CA ? GO:0030246 ... Q40750 32340396
    139081 6tt9:DDD (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    139082 6tta:A (-1.00) BS01 ZN 3.5.2.6 N/A E9NWK5 32426604
    139083 6tta:A (-1.00) BS02 ZN 3.5.2.6 N/A E9NWK5 32426604
    139084 6ttc:A (-1.00) BS01 ZN 3.5.2.6 N/A E9NWK5 32426604
    139085 6ttc:A (-1.00) BS02 ZN 3.5.2.6 N/A E9NWK5 32426604
    139086 6ttd:A (1.801) BS01 CU ? GO:0005507 ... O67206 N/A
    139087 6ttd:A (1.801) BS02 CU ? GO:0005507 ... O67206 N/A
    139088 6ttd:A (1.801) BS03 CU ? GO:0005507 ... O67206 N/A
    139089 6ttd:A (1.801) BS04 CU ? GO:0005507 ... O67206 N/A
    139090 6ttd:B (1.801) BS01 CU ? GO:0005507 ... O67206 N/A
    139091 6ttd:B (1.801) BS02 CU ? GO:0005507 ... O67206 N/A
    139092 6ttd:B (1.801) BS03 CU ? GO:0005507 ... O67206 N/A
    139093 6ttd:B (1.801) BS04 CU ? GO:0005507 ... O67206 N/A
    139094 6tte:A (2.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139095 6tte:B (2.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139096 6tte:C (2.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139097 6tte:D (2.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 31877353
    139098 6ttu:R (3.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000209 ... H2QLR9 32051583
    139099 6ttu:R (3.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000209 ... H2QLR9 32051583
    139100 6ttu:R (3.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000209 ... H2QLR9 32051583
    139101 6tu2:A (2.3) BS01 CA ? GO:0005509 ... Q5XI77 32344647
    139102 6tu2:A (2.3) BS02 CA ? GO:0005509 ... Q5XI77 32344647
    139103 6tu2:A (2.3) BS03 CA ? GO:0005509 ... Q5XI77 32344647
    139104 6tu2:B (2.3) BS01 CA ? GO:0005509 ... Q5XI77 32344647
    139105 6tu2:B (2.3) BS02 CA ? GO:0005509 ... Q5XI77 32344647
    139106 6tu2:B (2.3) BS03 CA ? GO:0005509 ... Q5XI77 32344647
    139107 6tu2:B (2.3) BS04 CA ? GO:0005509 ... Q5XI77 32344647
    139108 6tu2:C (2.3) BS01 CA ? GO:0005509 ... Q5XI77 32344647
    139109 6tu2:C (2.3) BS02 CA ? GO:0005509 ... Q5XI77 32344647
    139110 6tu2:C (2.3) BS03 CA ? GO:0005509 ... Q5XI77 32344647
    139111 6tu5:BBB (3.325) BS01 MG 2.7.7.48 GO:0000166 ... M9TLW3 32304664
    139112 6tu5:EEE (3.325) BS01 MG 2.7.7.48 GO:0000166 ... M9TLW3 32304664
    139113 6tuh:A (2.25) BS03 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139114 6tuh:B (2.25) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139115 6tuh:C (2.25) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139116 6tuh:D (2.25) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139117 6tuo:A (1.8) BS03 MG ? GO:0003676 ... O28951 N/A
    139118 6tut:A (3.25) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 32066962
    139119 6tut:A (3.25) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 32066962
    139120 6tut:B (3.25) BS01 ZN 2.7.7.6 GO:0000428 ... P22276 32066962
    139121 6tut:I (3.25) BS01 ZN ? GO:0000428 ... Q04307 32066962
    139122 6tut:J (3.25) BS01 ZN ? GO:0000428 ... P22139 32066962
    139123 6tut:L (3.25) BS01 ZN ? GO:0000428 ... P40422 32066962
    139124 6tv7:A (2.9) BS01 CA ? GO:0000086 ... P0DP23 34845372
    139125 6tv7:A (2.9) BS02 CA ? GO:0000086 ... P0DP23 34845372
    139126 6tv7:A (2.9) BS03 CA ? GO:0000086 ... P0DP23 34845372
    139127 6tv7:A (2.9) BS04 CA ? GO:0000086 ... P0DP23 34845372
    139128 6tvd:A (2.7) BS02 CA ? GO:0019031 ... A0A0A7HR51 33031770
    139129 6tvd:K (2.7) BS02 CA ? GO:0019031 ... A0A0A7HR51 33031770
    139130 6tve:P (1.05) BS01 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139131 6tve:P (1.05) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139132 6tve:P (1.05) BS03 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139133 6tvf:A (2.6) BS02 CA ? GO:0019031 ... A0A0A7HR51 33031770
    139134 6tvf:I (2.6) BS02 CA ? GO:0019031 ... A0A0A7HR51 33031770
    139135 6tvg:A (1.48) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139136 6tvg:A (1.48) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139137 6tvg:A (1.48) BS04 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139138 6tvk:AAA (2.1) BS02 ZN ? GO:0004565 ... K0JCW6 N/A
    139139 6tvn:A (2.31) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139140 6tvn:B (2.31) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139141 6tvn:C (2.31) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139142 6tvn:D (2.31) BS02 ZN 2.7.10.2 GO:0035556 ... Q06187 N/A
    139143 6tvo:B (3.201) BS02 MG 3.6.5.- GO:0003924 ... P62826 32585100
    139144 6tvr:K (2.63) BS01 CA ? GO:0019031 ... A0A0A7HR51 33031770
    139145 6tvv:A (2.8) BS01 MN ? GO:0003676 ... Q58241 N/A
    139146 6tvv:A (2.8) BS02 MN ? GO:0003676 ... Q58241 N/A
    139147 6tvv:B (2.8) BS01 MN ? GO:0003676 ... Q58241 N/A
    139148 6tvv:B (2.8) BS02 MN ? GO:0003676 ... Q58241 N/A
    139149 6tvx:A (2.6) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139150 6tvx:A (2.6) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139151 6tw0:A (2.5) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139152 6tw0:A (2.5) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139153 6tw1:A (2.7) BS03 MG ? GO:0003723 ... H6QM92 32304664
    139154 6tw1:A (2.7) BS04 MG ? GO:0003723 ... H6QM92 32304664
    139155 6tw1:B (2.7) BS03 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    139156 6tw1:B (2.7) BS04 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    139157 6tw4:A (1.73) BS02 CA ? GO:0003677 ... O74036 33662256
    139158 6tw5:AAA (1.55) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 N/A
    139159 6tw5:BBB (1.55) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 N/A
    139160 6tw5:CCC (1.55) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 N/A
    139161 6tw6:AAA (1.7) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 N/A
    139162 6tw6:BBB (1.7) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 N/A
    139163 6tw6:CCC (1.7) BS03 MG 2.3.1.97 GO:0004379 ... A5K1A2 N/A
    139164 6tw7:AAA (1.4) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 N/A
    139165 6tw8:AAA (1.79) BS03 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 N/A
    139166 6tw8:CCC (1.79) BS03 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 N/A
    139167 6tw9:A (1.52) BS02 CA ? GO:0003677 ... O74036 33662256
    139168 6twa:A (2.0) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139169 6twa:A (2.0) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139170 6twa:A (2.0) BS04 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139171 6twe:A (-1.00) BS01 CU1 ? N/A Q62YN7 32723819
    139172 6twf:A (2.5) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139173 6twf:A (2.5) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139174 6twf:A (2.5) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 32045236
    139175 6twm:A (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139176 6twm:B (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139177 6twm:C (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139178 6twm:D (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139179 6twm:E (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139180 6twm:G (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139181 6twm:I (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139182 6twm:J (2.5) BS01 ZN ? GO:0003674 ... Q5LUB5 32404365
    139183 6twq:A (2.65) BS02 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139184 6twq:A (2.65) BS03 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139185 6twq:A (2.65) BS04 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139186 6twq:A (2.65) BS05 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139187 6twq:A (2.65) BS06 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139188 6twq:B (2.65) BS02 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139189 6twq:B (2.65) BS03 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139190 6twq:B (2.65) BS04 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139191 6twq:B (2.65) BS05 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139192 6twq:B (2.65) BS06 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139193 6twq:B (2.65) BS07 CA ? GO:0001525 ... H7C535
    P07355
    32294469
    139194 6twt:A (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 32353499
    139195 6twt:A (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 32353499
    139196 6twt:A (0.95) BS03 CA 3.5.2.6 GO:0008270 ... C7C422 32353499
    139197 6twt:A (0.95) BS04 CA 3.5.2.6 GO:0008270 ... C7C422 32353499
    139198 6twt:B (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 32353499
    139199 6twt:B (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 32353499
    139200 6twt:B (0.95) BS03 CA 3.5.2.6 GO:0008270 ... C7C422 32353499

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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