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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    137801 6sir:C (1.7) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    137802 6sir:D (1.7) BS01 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    137803 6sit:D (4.5) BS01 CA ? GO:0005509 ... Q14126 31797817
    137804 6sit:D (4.5) BS02 CA ? GO:0005509 ... Q14126 31797817
    137805 6sit:D (4.5) BS03 CA ? GO:0005509 ... Q14126 31797817
    137806 6sit:D (4.5) BS04 CA ? GO:0005509 ... Q14126 31797817
    137807 6sit:D (4.5) BS05 CA ? GO:0005509 ... Q14126 31797817
    137808 6sit:D (4.5) BS06 CA ? GO:0005509 ... Q14126 31797817
    137809 6siv:B (1.752) BS01 ZN ? GO:0003677 ... P03126 N/A
    137810 6siv:B (1.752) BS02 ZN ? GO:0003677 ... P03126 N/A
    137811 6siw:A (1.96) BS02 MG ? GO:0000166 ... A0A022MRT4 31903677
    137812 6siw:A (1.96) BS03 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137813 6siw:A (1.96) BS04 MG ? GO:0000166 ... A0A022MRT4 31903677
    137814 6siw:A (1.96) BS05 MG ? GO:0000166 ... A0A022MRT4 31903677
    137815 6siw:B (1.96) BS01 MG ? GO:0000166 ... A0A022MRT4 31903677
    137816 6siw:B (1.96) BS02 MG ? GO:0000166 ... A0A022MRT4 31903677
    137817 6siw:B (1.96) BS04 MG ? GO:0000166 ... A0A022MRT4 31903677
    137818 6siw:B (1.96) BS05 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137819 6six:A (1.88) BS02 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137820 6six:A (1.88) BS03 MG ? GO:0000166 ... A0A022MRT4 31903677
    137821 6six:A (1.88) BS04 MG ? GO:0000166 ... A0A022MRT4 31903677
    137822 6six:B (1.88) BS01 MG ? GO:0000166 ... A0A022MRT4 31903677
    137823 6six:B (1.88) BS02 MG ? GO:0000166 ... A0A022MRT4 31903677
    137824 6six:B (1.88) BS04 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137825 6siy:A (1.95) BS04 MG ? GO:0000166 ... A0A022MRT4 31903677
    137826 6siy:A (1.95) BS05 MG ? GO:0000166 ... A0A022MRT4 31903677
    137827 6siy:B (1.95) BS01 MG ? GO:0000166 ... A0A022MRT4 31903677
    137828 6siy:B (1.95) BS02 MG ? GO:0000166 ... A0A022MRT4 31903677
    137829 6siy:B (1.95) BS05 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137830 6siz:A (1.77) BS01 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137831 6siz:A (1.77) BS04 MG ? GO:0000166 ... A0A022MRT4 31903677
    137832 6siz:A (1.77) BS05 MG ? GO:0000166 ... A0A022MRT4 31903677
    137833 6siz:B (1.77) BS01 MG ? GO:0000166 ... A0A022MRT4 31903677
    137834 6siz:B (1.77) BS02 ZN ? GO:0000166 ... A0A022MRT4 31903677
    137835 6siz:B (1.77) BS05 MG ? GO:0000166 ... A0A022MRT4 31903677
    137836 6sj0:A (1.75) BS01 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137837 6sj0:B (1.75) BS01 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137838 6sj1:A (2.06) BS01 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137839 6sj1:B (2.06) BS01 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137840 6sj2:A (1.25) BS02 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137841 6sj2:B (1.25) BS02 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137842 6sj3:A (1.17) BS02 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137843 6sj3:B (1.17) BS02 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137844 6sj4:A (1.81) BS02 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137845 6sj4:B (1.81) BS02 ZN ? GO:0016787 ... A0A022MQ12 31903677
    137846 6sja:B (1.5) BS01 ZN ? GO:0003677 ... P03126 N/A
    137847 6sja:B (1.5) BS02 ZN ? GO:0003677 ... P03126 N/A
    137848 6sji:A (1.8) BS01 CU ? N/A W0DP94 32094184
    137849 6sji:A (1.8) BS02 CU ? N/A W0DP94 32094184
    137850 6sji:B (1.8) BS01 CU ? N/A W0DP94 32094184
    137851 6sji:B (1.8) BS02 CU ? N/A W0DP94 32094184
    137852 6sji:J (1.8) BS01 CU ? N/A W0DP94 32094184
    137853 6sji:J (1.8) BS02 CU ? N/A W0DP94 32094184
    137854 6sji:K (1.8) BS01 CU ? N/A W0DP94 32094184
    137855 6sji:K (1.8) BS02 CU ? N/A W0DP94 32094184
    137856 6sjv:A (2.029) BS03 ZN 2.3.2.26 GO:0003677 ... P06463
    Q05086    		 N/A
    137857 6sjv:A (2.029) BS04 ZN 2.3.2.26 GO:0003677 ... P06463
    Q05086    		 N/A
    137858 6sjw:A (-1.00) BS01 CA ? GO:0005509 ... P55127 32184239
    137859 6sjw:A (-1.00) BS02 CA ? GO:0005509 ... P55127 32184239
    137860 6sjw:A (-1.00) BS03 CA ? GO:0005509 ... P55127 32184239
    137861 6sjw:A (-1.00) BS04 CA ? GO:0005509 ... P55127 32184239
    137862 6sjx:A (-1.00) BS01 CA ? GO:0005509 ... P55127 32184239
    137863 6sjx:A (-1.00) BS02 CA ? GO:0005509 ... P55127 32184239
    137864 6sjx:A (-1.00) BS03 CA ? GO:0005509 ... P55127 32184239
    137865 6sjx:A (-1.00) BS04 CA ? GO:0005509 ... P55127 32184239
    137866 6sjx:A (-1.00) BS05 CA ? GO:0005509 ... P55127 32184239
    137867 6ska:D (3.86) BS01 CA ? GO:0004930 ... Q80TR1 31928845
    137868 6skf:Ag (2.95) BS02 ZN ? GO:0003723 ... Q5JJG8 32555463
    137869 6skf:Ar (2.95) BS02 ZN ? GO:0002181 ... Q5JJG2 32555463
    137870 6skf:As (2.95) BS02 ZN ? GO:0003735 ... Q5JDH9 32555463
    137871 6skf:Ax (2.95) BS02 ZN ? GO:0000028 ... Q5JE50 32555463
    137872 6skf:Az (2.95) BS01 ZN ? N/A Q5JFE2 32555463
    137873 6skf:Az (2.95) BS02 ZN ? N/A Q5JFE2 32555463
    137874 6skf:BY (2.95) BS03 ZN ? GO:0003735 ... Q5JGR5 32555463
    137875 6skf:Bg (2.95) BS02 ZN ? GO:0003723 ... Q5JDM6 32555463
    137876 6skf:Bh (2.95) BS02 ZN ? GO:0003723 ... Q5JIE1 32555463
    137877 6skf:Bj (2.95) BS02 ZN ? GO:0003735 ... Q5JJD3 32555463
    137878 6skf:Bl (2.95) BS02 ZN ? GO:0003735 ... Q5JE51 32555463
    137879 6skg:Ag (2.65) BS02 ZN ? GO:0003723 ... Q5JJG8 32555463
    137880 6skg:Ar (2.65) BS02 ZN ? GO:0002181 ... Q5JJG2 32555463
    137881 6skg:As (2.65) BS02 ZN ? GO:0003735 ... Q5JDH9 32555463
    137882 6skg:Ax (2.65) BS02 ZN ? GO:0000028 ... Q5JE50 32555463
    137883 6skg:Az (2.65) BS01 ZN ? N/A Q5JFE2 32555463
    137884 6skg:Az (2.65) BS02 ZN ? N/A Q5JFE2 32555463
    137885 6skg:BY (2.65) BS02 ZN ? GO:0003735 ... Q5JGR5 32555463
    137886 6skg:Be (2.65) BS02 ZN ? GO:0003735 ... Q5JJF7 32555463
    137887 6skg:Bg (2.65) BS02 ZN ? GO:0003723 ... Q5JDM6 32555463
    137888 6skg:Bh (2.65) BS02 ZN ? GO:0003723 ... Q5JIE1 32555463
    137889 6skg:Bj (2.65) BS02 ZN ? GO:0003735 ... Q5JJD3 32555463
    137890 6skg:Bl (2.65) BS02 ZN ? GO:0003735 ... Q5JE51 32555463
    137891 6skg:Bo (2.65) BS02 ZN ? N/A Q5JFH3 32555463
    137892 6skh:A (1.58) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 38224368
    137893 6skh:A (1.58) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 38224368
    137894 6skh:A (1.58) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 38224368
    137895 6skl:2 (3.7) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 32369734
    137896 6skl:4 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 32369734
    137897 6skl:5 (3.7) BS04 ZN 3.6.4.12 GO:0000727 ... P29496 32369734
    137898 6skl:6 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 32369734
    137899 6skl:7 (3.7) BS02 ZN 3.6.4.12 GO:0000727 ... P38132 32369734
    137900 6sko:2 (3.4) BS03 MG 3.6.4.12 GO:0000727 ... P29469 32369734
    137901 6skr:A (1.85) BS02 MG 3.5.2.6 GO:0008658 ... Q7BNC2 32683794
    137902 6sks:A (1.75) BS01 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137903 6sks:A (1.75) BS02 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137904 6sks:A (1.75) BS03 ZN 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137905 6skt:A (1.9) BS01 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137906 6skt:A (1.9) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137907 6skt:A (1.9) BS04 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137908 6sku:B (3.2) BS02 MG 3.6.5.2 GO:0003924 ... Q9H0U4 32440549
    137909 6skv:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137910 6skv:A (1.75) BS02 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137911 6skv:A (1.75) BS03 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137912 6skv:A (1.75) BS04 CU 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 N/A
    137913 6sl2:A (3.1) BS01 CA ? GO:0003779 ... C4LWU6 32848067
    137914 6sl3:A (3.1) BS01 CA ? GO:0003779 ... C4LWU6 32848067
    137915 6sl4:A (1.8) BS01 CA ? GO:0005975 ... A3DC31 N/A
    137916 6sl4:A (1.8) BS02 CA ? GO:0005975 ... A3DC31 N/A
    137917 6sl4:B (1.8) BS01 CA ? GO:0005975 ... A3DC31 N/A
    137918 6sl4:B (1.8) BS02 CA ? GO:0005975 ... A3DC31 N/A
    137919 6sl4:C (1.8) BS01 CA ? GO:0005975 ... A3DC31 N/A
    137920 6sl4:C (1.8) BS02 CA ? GO:0005975 ... A3DC31 N/A
    137921 6sl5:B (2.84) BS50 CA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    137922 6sl6:A (1.67) BS01 ZN ? GO:0000976 ... P04637 32294448
    137923 6slf:A (1.75) BS01 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137924 6slf:A (1.75) BS02 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137925 6slf:B (1.75) BS02 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137926 6slf:B (1.75) BS03 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137927 6slf:C (1.75) BS01 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137928 6slf:C (1.75) BS02 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137929 6slf:D (1.75) BS02 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137930 6slf:D (1.75) BS03 ZN 3.5.1.133 GO:0016787 ... Q8GGD4 32306870
    137931 6slh:AAA (1.89) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 32039887
    137932 6slh:BBB (1.89) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 32039887
    137933 6slh:CCC (1.89) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 32039887
    137934 6slh:DDD (1.89) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 32039887
    137935 6sll:A (1.2) BS03 MG 2.3.1.178 GO:0016746 ... D3EKC1 31969391
    137936 6slm:A (2.8) BS03 ZN 2.3.2.26 GO:0003677 ... P0AEX9
    P17386
    Q05086    		 33115863
    137937 6slm:A (2.8) BS04 ZN 2.3.2.26 GO:0003677 ... P0AEX9
    P17386
    Q05086    		 33115863
    137938 6slo:A (1.94) BS01 MG ? GO:0003676 ... Q9UHX1 33159082
    137939 6slo:A (1.94) BS02 MG ? GO:0003676 ... Q9UHX1 33159082
    137940 6sm1:A (1.55) BS01 CA ? GO:0002250 ... P01704 32151314
    137941 6smk:A (2.997) BS01 ZN ? N/A Q835A4 34281200
    137942 6smk:B (2.997) BS01 ZN ? N/A Q835A4 34281200
    137943 6smk:C (2.997) BS01 ZN ? N/A Q835A4 34281200
    137944 6smk:D (2.997) BS01 ZN ? N/A Q835A4 34281200
    137945 6smk:E (2.997) BS01 ZN ? N/A Q835A4 34281200
    137946 6sms:A (1.47) BS01 CA N/A GO:0005576 ... N/A N/A
    137947 6sms:A (1.47) BS02 CA N/A GO:0005576 ... N/A N/A
    137948 6sms:A (1.47) BS03 CA N/A GO:0005576 ... N/A N/A
    137949 6smv:A (2.14) BS05 ZN ? GO:0003677 ... P0AEX9
    P36813
    Q92585    		 N/A
    137950 6smv:A (2.14) BS06 ZN ? GO:0003677 ... P0AEX9
    P36813
    Q92585    		 N/A
    137951 6sn6:A (1.93) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    137952 6sn6:A (1.93) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    137953 6sn6:A (1.93) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    137954 6sn6:A (1.93) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    137955 6sna:A (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137956 6sna:B (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137957 6sna:F (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137958 6sna:G (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137959 6sna:J (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137960 6sna:K (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137961 6sna:N (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137962 6sna:X (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    137963 6sno:A (2.7) BS01 ZN 5.4.2.2 GO:0000287 ... P36871 32221390
    137964 6snp:A (2.75) BS01 MG 5.4.2.2 GO:0000287 ... P36871 32221390
    137965 6snq:A (2.7) BS01 ZN 5.4.2.2 GO:0000287 ... P36871 32221390
    137966 6sns:B (2.6) BS01 ZN ? GO:0005524 ... Q12083 34088835
    137967 6snt:F (2.8) BS03 MG ? GO:0000028 ... P26783 32203490
    137968 6snt:aa (2.8) BS02 ZN ? GO:0002181 ... P0CX25 32203490
    137969 6snt:ab (2.8) BS02 ZN ? GO:0002181 ... P0CX27 32203490
    137970 6snt:ad (2.8) BS02 ZN ? GO:0000027 ... P0CH08 32203490
    137971 6snt:ag (2.8) BS03 ZN ? GO:0000448 ... P49166 32203490
    137972 6snt:aj (2.8) BS02 ZN ? GO:0002181 ... P87262 32203490
    137973 6snt:d (2.8) BS02 ZN ? GO:0002181 ... P41057 32203490
    137974 6snt:f (2.8) BS02 ZN ? GO:0000028 ... P05759 32203490
    137975 6snv:B (2.5) BS01 ZN ? GO:0005524 ... Q12083 34088835
    137976 6snv:B (2.5) BS02 ZN ? GO:0005524 ... Q12083 34088835
    137977 6snv:E (2.5) BS01 ZN ? GO:0005524 ... Q12083 34088835
    137978 6snv:E (2.5) BS02 ZN ? GO:0005524 ... Q12083 34088835
    137979 6so1:A (1.66) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    137980 6so2:A (1.6) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    137981 6so4:A (1.51) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    137982 6so5:A (4.2) BS01 ZN 3.6.-.- GO:0005515 ... O43681 32910895
    137983 6sod:A (1.87) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    137984 6soi:A (1.55) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    137985 6son:A (1.6) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137986 6son:A (1.6) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137987 6soo:A (1.57) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137988 6soo:A (1.57) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137989 6soq:A (1.67) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137990 6soq:A (1.67) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137991 6sor:A (1.74) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137992 6sor:A (1.74) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    137993 6sot:A (1.54) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    137994 6sov:A (1.31) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    137995 6sov:A (1.31) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    137996 6soy:C (2.75) BS01 FE ? GO:0005515 ... P02787 31636418
    137997 6soz:C (3.42) BS01 FE ? GO:0005515 ... P02787 31636418
    137998 6sp0:A (1.77) BS02 ZN 2.3.1.- N/A Q8CIB9 N/A
    137999 6sp7:A (1.8) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31765155
    138000 6sp7:A (1.8) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31765155
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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