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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    137401 6s7e:A (1.82) BS01 FE 1.13.11.20 GO:0005506 ... Q9SJI9 32868422
    137402 6s7f:A (2.05) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 N/A
    137403 6s7f:A (2.05) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 N/A
    137404 6s7f:A (2.05) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 N/A
    137405 6s7g:A (1.841) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    137406 6s7g:A (1.841) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    137407 6s7g:B (1.841) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    137408 6s7g:B (1.841) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    137409 6s7g:C (1.841) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    137410 6s7g:C (1.841) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    137411 6s7g:D (1.841) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    137412 6s7g:D (1.841) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    137413 6s7h:A (1.85) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 N/A
    137414 6s7h:A (1.85) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 N/A
    137415 6s7h:A (1.85) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 N/A
    137416 6s7p:A (3.2) BS03 MG 7.6.2.1 GO:0005515 ... P21439 31873305
    137417 6s7t:E (3.5) BS06 MG ? GO:0006486 ... P04843 31831667
    137418 6s83:B (2.336) BS03 MG 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    137419 6s83:D (2.336) BS02 MG 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    137420 6s83:F (2.336) BS03 MG 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    137421 6s83:H (2.336) BS02 MG 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    137422 6s84:B (2.89) BS02 MG N/A GO:0002949 ... N/A 29741707
    137423 6s84:E (2.89) BS01 MG N/A GO:0002949 ... N/A 29741707
    137424 6s85:A (4.2) BS02 MN ? GO:0000014 ... P0AG76 31492634
    137425 6s85:A (4.2) BS03 MN ? GO:0000014 ... P0AG76 31492634
    137426 6s85:B (4.2) BS01 MN ? GO:0000014 ... P0AG76 31492634
    137427 6s85:B (4.2) BS02 MN ? GO:0000014 ... P0AG76 31492634
    137428 6s85:D (4.2) BS05 MG ? GO:0000014 ... P13458 31492634
    137429 6s8b:K (2.41) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    137430 6s8b:K (2.41) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    137431 6s8b:K (2.41) BS06 MN ? GO:0016020 ... F0NDX2 32730741
    137432 6s8e:K (3.1) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    137433 6s8m:K (4.5) BS01 MG ? GO:0003777 ... P24339 30659798
    137434 6s8y:A (2.09) BS02 ZN ? GO:0005515 ... P00044 31460523
    137435 6s91:K (2.68) BS03 ZN ? GO:0016020 ... F0NDX2 32730741
    137436 6s91:K (2.68) BS06 MN ? GO:0016020 ... F0NDX2 32730741
    137437 6s91:K (2.68) BS07 MN ? GO:0016020 ... F0NDX2 32730741
    137438 6s9a:A (1.86) BS01 ZN 3.6.5.5 GO:0003924 ... Q05193 34244431
    137439 6s9a:B (1.86) BS01 ZN 3.6.5.5 GO:0003924 ... Q05193 34244431
    137440 6s9e:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 32151315
    137441 6s9e:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 32151315
    137442 6s9e:D (2.25) BS02 MG ? GO:0000226 ... Q6B856 32151315
    137443 6s9e:F (2.25) BS02 MG N/A GO:0036211 ... N/A 32151315
    137444 6s9g:A (1.14) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    137445 6s9m:A (2.0) BS01 CA N/A N/A N/A 31985201
    137446 6s9m:A (2.0) BS02 CA N/A N/A N/A 31985201
    137447 6s9m:A (2.0) BS03 CA N/A N/A N/A 31985201
    137448 6s9m:A (2.0) BS04 CA N/A N/A N/A 31985201
    137449 6s9m:A (2.0) BS05 CA N/A N/A N/A 31985201
    137450 6s9m:B (2.0) BS01 CA N/A N/A N/A 31985201
    137451 6s9m:B (2.0) BS02 CA N/A N/A N/A 31985201
    137452 6s9m:B (2.0) BS03 CA N/A N/A N/A 31985201
    137453 6s9m:B (2.0) BS04 CA N/A N/A N/A 31985201
    137454 6s9m:B (2.0) BS05 CA N/A N/A N/A 31985201
    137455 6s9m:B (2.0) BS06 CA N/A N/A N/A 31985201
    137456 6s9m:C (2.0) BS01 CA N/A N/A N/A 31985201
    137457 6s9m:C (2.0) BS02 CA N/A N/A N/A 31985201
    137458 6s9m:C (2.0) BS03 CA N/A N/A N/A 31985201
    137459 6s9m:C (2.0) BS04 CA N/A N/A N/A 31985201
    137460 6s9m:C (2.0) BS05 CA N/A N/A N/A 31985201
    137461 6s9m:C (2.0) BS06 CA N/A N/A N/A 31985201
    137462 6s9m:D (2.0) BS01 CA N/A N/A N/A 31985201
    137463 6s9m:D (2.0) BS02 CA N/A N/A N/A 31985201
    137464 6s9m:D (2.0) BS03 CA N/A N/A N/A 31985201
    137465 6s9m:E (2.0) BS01 CA N/A N/A N/A 31985201
    137466 6s9m:E (2.0) BS02 CA N/A N/A N/A 31985201
    137467 6s9m:E (2.0) BS03 CA N/A N/A N/A 31985201
    137468 6s9m:E (2.0) BS04 CA N/A N/A N/A 31985201
    137469 6s9m:E (2.0) BS05 CA N/A N/A N/A 31985201
    137470 6s9m:E (2.0) BS06 CA N/A N/A N/A 31985201
    137471 6s9m:F (2.0) BS01 CA N/A N/A N/A 31985201
    137472 6s9m:F (2.0) BS02 CA N/A N/A N/A 31985201
    137473 6s9m:F (2.0) BS03 CA N/A N/A N/A 31985201
    137474 6s9n:A (2.1) BS01 CA N/A N/A N/A 31985201
    137475 6s9n:A (2.1) BS02 CA N/A N/A N/A 31985201
    137476 6s9n:A (2.1) BS03 CA N/A N/A N/A 31985201
    137477 6s9n:A (2.1) BS04 CA N/A N/A N/A 31985201
    137478 6s9n:A (2.1) BS05 CA N/A N/A N/A 31985201
    137479 6s9n:B (2.1) BS01 CA N/A N/A N/A 31985201
    137480 6s9n:B (2.1) BS02 CA N/A N/A N/A 31985201
    137481 6s9n:B (2.1) BS03 CA N/A N/A N/A 31985201
    137482 6s9n:B (2.1) BS04 CA N/A N/A N/A 31985201
    137483 6s9n:B (2.1) BS05 CA N/A N/A N/A 31985201
    137484 6s9n:C (2.1) BS01 CA N/A N/A N/A 31985201
    137485 6s9n:C (2.1) BS02 CA N/A N/A N/A 31985201
    137486 6s9n:C (2.1) BS03 CA N/A N/A N/A 31985201
    137487 6s9n:C (2.1) BS04 CA N/A N/A N/A 31985201
    137488 6s9n:C (2.1) BS05 CA N/A N/A N/A 31985201
    137489 6s9n:D (2.1) BS01 CA N/A N/A N/A 31985201
    137490 6s9n:E (2.1) BS01 CA N/A N/A N/A 31985201
    137491 6s9n:E (2.1) BS02 CA N/A N/A N/A 31985201
    137492 6s9n:E (2.1) BS03 CA N/A N/A N/A 31985201
    137493 6s9n:E (2.1) BS04 CA N/A N/A N/A 31985201
    137494 6s9n:E (2.1) BS05 CA N/A N/A N/A 31985201
    137495 6s9n:E (2.1) BS06 CA N/A N/A N/A 31985201
    137496 6s9n:F (2.1) BS01 CA N/A N/A N/A 31985201
    137497 6s9n:F (2.1) BS02 CA N/A N/A N/A 31985201
    137498 6s9n:F (2.1) BS03 CA N/A N/A N/A 31985201
    137499 6s9n:F (2.1) BS04 CA N/A N/A N/A 31985201
    137500 6s9n:F (2.1) BS05 CA N/A N/A N/A 31985201
    137501 6s9n:F (2.1) BS06 CA N/A N/A N/A 31985201
    137502 6s9o:A (3.17) BS01 CA N/A N/A N/A 31985201
    137503 6s9o:A (3.17) BS02 CA N/A N/A N/A 31985201
    137504 6s9o:A (3.17) BS03 CA N/A N/A N/A 31985201
    137505 6s9o:A (3.17) BS04 CA N/A N/A N/A 31985201
    137506 6s9o:A (3.17) BS05 CA N/A N/A N/A 31985201
    137507 6s9o:B (3.17) BS01 CA N/A N/A N/A 31985201
    137508 6s9o:B (3.17) BS02 CA N/A N/A N/A 31985201
    137509 6s9o:B (3.17) BS03 CA N/A N/A N/A 31985201
    137510 6s9o:B (3.17) BS04 CA N/A N/A N/A 31985201
    137511 6s9o:B (3.17) BS05 CA N/A N/A N/A 31985201
    137512 6s9o:C (3.17) BS01 CA N/A N/A N/A 31985201
    137513 6s9o:C (3.17) BS02 CA N/A N/A N/A 31985201
    137514 6s9o:C (3.17) BS03 CA N/A N/A N/A 31985201
    137515 6s9o:C (3.17) BS04 CA N/A N/A N/A 31985201
    137516 6s9o:C (3.17) BS05 CA N/A N/A N/A 31985201
    137517 6s9o:D (3.17) BS01 CA N/A N/A N/A 31985201
    137518 6s9o:D (3.17) BS02 CA N/A N/A N/A 31985201
    137519 6s9o:D (3.17) BS03 CA N/A N/A N/A 31985201
    137520 6s9o:D (3.17) BS04 CA N/A N/A N/A 31985201
    137521 6s9o:D (3.17) BS05 CA N/A N/A N/A 31985201
    137522 6s9o:E (3.17) BS01 CA N/A N/A N/A 31985201
    137523 6s9o:E (3.17) BS02 CA N/A N/A N/A 31985201
    137524 6s9o:E (3.17) BS03 CA N/A N/A N/A 31985201
    137525 6s9o:E (3.17) BS04 CA N/A N/A N/A 31985201
    137526 6s9o:E (3.17) BS05 CA N/A N/A N/A 31985201
    137527 6s9o:F (3.17) BS01 CA N/A N/A N/A 31985201
    137528 6s9q:A (1.69) BS04 CA ? GO:0000122 ... P31947 32501690
    137529 6s9z:A (0.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    137530 6sa0:A (2.209) BS05 MN ? GO:0046872 ... A0R5T1 32826907
    137531 6sa0:A (2.209) BS06 MN ? GO:0046872 ... A0R5T1 32826907
    137532 6sa0:D (2.209) BS05 MN ? GO:0046872 ... A0R5T1 32826907
    137533 6sa0:D (2.209) BS06 MN ? GO:0046872 ... A0R5T1 32826907
    137534 6sa1:A (2.01) BS03 MN ? GO:0046872 ... A0R5T1 32826907
    137535 6sa1:A (2.01) BS04 MN ? GO:0046872 ... A0R5T1 32826907
    137536 6sa1:A (2.01) BS06 MG ? GO:0046872 ... A0R5T1 32826907
    137537 6sa1:D (2.01) BS03 MN ? GO:0046872 ... A0R5T1 32826907
    137538 6sa1:D (2.01) BS04 MN ? GO:0046872 ... A0R5T1 32826907
    137539 6sa4:A (1.77) BS01 MG ? GO:0016020 ... Q9UGM3 32098784
    137540 6sa5:A (1.29) BS01 MG ? GO:0016020 ... Q9UGM3 32098784
    137541 6sac:A (1.02) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    137542 6sag:A (2.0) BS02 CA ? GO:0005198 ... P69687 31535454
    137543 6san:A (1.36) BS01 MG ? GO:0016020 ... Q9UGM3 32098784
    137544 6san:A (1.36) BS02 MG ? GO:0016020 ... Q9UGM3 32098784
    137545 6san:A (1.36) BS03 MG ? GO:0016020 ... Q9UGM3 32098784
    137546 6san:B (1.36) BS01 MG ? GO:0016020 ... Q9UGM3 32098784
    137547 6san:B (1.36) BS02 MG ? GO:0016020 ... Q9UGM3 32098784
    137548 6san:B (1.36) BS03 MG ? GO:0016020 ... Q9UGM3 32098784
    137549 6sao:A (1.2) BS06 CA N/A GO:0004556 ... N/A 31623309
    137550 6sar:A (2.18) BS01 ZN 3.4.-.- GO:0004222 ... P66948 33106348
    137551 6sas:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    137552 6sau:A (1.35) BS06 CA N/A GO:0004556 ... N/A 31623309
    137553 6sau:B (1.35) BS08 CA N/A GO:0004556 ... N/A 31623309
    137554 6sav:A (1.4) BS01 CA 3.2.1.1 GO:0004556 ... M9TI89 31623309
    137555 6sav:B (1.4) BS01 CA 3.2.1.1 GO:0004556 ... M9TI89 31623309
    137556 6say:A (0.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    137557 6saz:A (3.0) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 31604990
    137558 6saz:C (3.0) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 31604990
    137559 6sb7:A (1.09) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    137560 6sb9:E (1.3) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137561 6sb9:E (1.3) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137562 6sb9:E (1.3) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137563 6sb9:E (1.3) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137564 6sb9:E (1.3) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137565 6sbh:A (0.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    137566 6sbi:A (2.7) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137567 6sbi:B (2.7) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137568 6sbi:C (2.7) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137569 6sbi:D (2.7) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137570 6sbj:A (2.22) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137571 6sbj:A (2.22) BS02 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137572 6sbj:B (2.22) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137573 6sbj:B (2.22) BS02 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137574 6sbj:C (2.22) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137575 6sbj:C (2.22) BS02 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137576 6sbj:D (2.22) BS01 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137577 6sbj:D (2.22) BS02 MG 3.7.1.5
    4.1.1.112    		 GO:0003824 ... Q8R0F8 32068790
    137578 6sbk:E (1.48) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137579 6sbk:E (1.48) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137580 6sbk:E (1.48) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137581 6sbk:E (1.48) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137582 6sbk:E (1.48) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137583 6sbl:A (0.94) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137584 6sbm:A (0.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137585 6sbq:A (1.33) BS01 ZN 3.4.11.- GO:0006508 ... O96935 32182520
    137586 6sbr:A (1.54) BS01 ZN 3.4.11.- GO:0006508 ... O96935 32182520
    137587 6sc0:E (1.53) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137588 6sc0:E (1.53) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137589 6sc0:E (1.53) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137590 6sc0:E (1.53) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137591 6sc0:E (1.53) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137592 6sc1:E (1.56) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137593 6sc1:E (1.56) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137594 6sc1:E (1.56) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137595 6sc1:E (1.56) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137596 6sc1:E (1.56) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137597 6sc3:E (1.82) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137598 6sc3:E (1.82) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137599 6sc3:E (1.82) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137600 6sc3:E (1.82) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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