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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    137001 6rv2:A (3.0) BS02 K ? GO:0005252 ... O14649 32499642
    137002 6rv2:A (3.0) BS03 K ? GO:0005252 ... O14649 32499642
    137003 6rv2:A (3.0) BS06 K ? GO:0005252 ... O14649 32499642
    137004 6rv2:B (3.0) BS01 K ? GO:0005252 ... O14649 32499642
    137005 6rv2:B (3.0) BS02 K ? GO:0005252 ... O14649 32499642
    137006 6rv2:B (3.0) BS03 K ? GO:0005252 ... O14649 32499642
    137007 6rv2:B (3.0) BS05 K ? GO:0005252 ... O14649 32499642
    137008 6rv2:C (3.0) BS01 K ? GO:0005252 ... O14649 32499642
    137009 6rv2:C (3.0) BS02 K ? GO:0005252 ... O14649 32499642
    137010 6rv2:C (3.0) BS03 K ? GO:0005252 ... O14649 32499642
    137011 6rv2:C (3.0) BS04 K ? GO:0005252 ... O14649 32499642
    137012 6rv2:D (3.0) BS01 K ? GO:0005252 ... O14649 32499642
    137013 6rv2:D (3.0) BS02 K ? GO:0005252 ... O14649 32499642
    137014 6rv2:D (3.0) BS03 K ? GO:0005252 ... O14649 32499642
    137015 6rv2:D (3.0) BS04 K ? GO:0005252 ... O14649 32499642
    137016 6rv3:A (2.9) BS01 K ? GO:0005252 ... O14649 32499642
    137017 6rv3:A (2.9) BS02 K ? GO:0005252 ... O14649 32499642
    137018 6rv3:A (2.9) BS03 K ? GO:0005252 ... O14649 32499642
    137019 6rv3:A (2.9) BS06 K ? GO:0005252 ... O14649 32499642
    137020 6rv3:B (2.9) BS01 K ? GO:0005252 ... O14649 32499642
    137021 6rv3:B (2.9) BS02 K ? GO:0005252 ... O14649 32499642
    137022 6rv3:B (2.9) BS03 K ? GO:0005252 ... O14649 32499642
    137023 6rv3:B (2.9) BS05 K ? GO:0005252 ... O14649 32499642
    137024 6rv3:C (2.9) BS01 K ? GO:0005252 ... O14649 32499642
    137025 6rv3:C (2.9) BS02 K ? GO:0005252 ... O14649 32499642
    137026 6rv3:C (2.9) BS03 K ? GO:0005252 ... O14649 32499642
    137027 6rv3:C (2.9) BS04 K ? GO:0005252 ... O14649 32499642
    137028 6rv3:D (2.9) BS01 K ? GO:0005252 ... O14649 32499642
    137029 6rv3:D (2.9) BS02 K ? GO:0005252 ... O14649 32499642
    137030 6rv3:D (2.9) BS03 K ? GO:0005252 ... O14649 32499642
    137031 6rv3:D (2.9) BS04 K ? GO:0005252 ... O14649 32499642
    137032 6rv4:A (3.1) BS01 K ? GO:0005252 ... O14649 32499642
    137033 6rv4:A (3.1) BS02 K ? GO:0005252 ... O14649 32499642
    137034 6rv4:A (3.1) BS03 K ? GO:0005252 ... O14649 32499642
    137035 6rv4:A (3.1) BS07 K ? GO:0005252 ... O14649 32499642
    137036 6rv4:B (3.1) BS01 K ? GO:0005252 ... O14649 32499642
    137037 6rv4:B (3.1) BS02 K ? GO:0005252 ... O14649 32499642
    137038 6rv4:B (3.1) BS03 K ? GO:0005252 ... O14649 32499642
    137039 6rv4:B (3.1) BS05 K ? GO:0005252 ... O14649 32499642
    137040 6rv4:C (3.1) BS01 K ? GO:0005252 ... O14649 32499642
    137041 6rv4:C (3.1) BS02 K ? GO:0005252 ... O14649 32499642
    137042 6rv4:C (3.1) BS03 K ? GO:0005252 ... O14649 32499642
    137043 6rv4:C (3.1) BS04 K ? GO:0005252 ... O14649 32499642
    137044 6rv4:D (3.1) BS01 K ? GO:0005252 ... O14649 32499642
    137045 6rv4:D (3.1) BS02 K ? GO:0005252 ... O14649 32499642
    137046 6rv4:D (3.1) BS03 K ? GO:0005252 ... O14649 32499642
    137047 6rv4:D (3.1) BS04 K ? GO:0005252 ... O14649 32499642
    137048 6rv5:A (1.58) BS02 ZN 2.4.1.10 GO:0009758 ... B2VCC3 31877648
    137049 6rv5:A (1.58) BS03 ZN 2.4.1.10 GO:0009758 ... B2VCC3 31877648
    137050 6rvd:C (3.5) BS01 ZN 3.1.-.- GO:0007267 ... Q15465 31548691
    137051 6rvd:C (3.5) BS02 CA 3.1.-.- GO:0007267 ... Q15465 31548691
    137052 6rvd:C (3.5) BS03 CA 3.1.-.- GO:0007267 ... Q15465 31548691
    137053 6rvf:A (2.07) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31423863
    137054 6rvk:A (1.58) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31423863
    137055 6rvl:A (1.72) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31423863
    137056 6rvm:C (2.155) BS02 MG ? GO:0003924 ... P0A031 31997533
    137057 6rvn:A (1.242) BS02 CA ? GO:0003924 ... P0A031 31997533
    137058 6rvp:A (1.16) BS02 CA ? GO:0003924 ... P0A031 31997533
    137059 6rvq:A (1.136) BS02 CA ? GO:0003924 ... P0A031 31997533
    137060 6rw1:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31423863
    137061 6rw4:B (2.97) BS02 MG ? GO:0003735 ... Q9Y399 32522994
    137062 6rw4:O (2.97) BS02 ZN ? GO:0003735 ... Q9Y676 32522994
    137063 6rw5:7 (3.14) BS03 MG ? GO:0003723 ... P46199 32522994
    137064 6rw5:B (3.14) BS02 MG ? GO:0003735 ... Q9Y399 32522994
    137065 6rw5:O (3.14) BS02 ZN ? GO:0003735 ... Q9Y676 32522994
    137066 6rw7:A (1.4) BS01 CU ? N/A C5BKQ9 31583018
    137067 6rw7:A (1.4) BS02 CU1 ? N/A C5BKQ9 31583018
    137068 6rwe:A (3.0) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 31804486
    137069 6rwe:A (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 31804486
    137070 6rwe:B (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... P22138 31804486
    137071 6rwe:I (3.0) BS01 ZN ? GO:0000122 ... P32529 31804486
    137072 6rwe:I (3.0) BS02 ZN ? GO:0000122 ... P32529 31804486
    137073 6rwe:J (3.0) BS01 ZN ? GO:0000428 ... P22139 31804486
    137074 6rwe:L (3.0) BS01 ZN ? GO:0000428 ... P40422 31804486
    137075 6rwe:Q (3.0) BS03 ZN ? GO:0000120 ... P40992 31804486
    137076 6rwf:A (1.64) BS01 CO 3.2.1.-
    3.2.1.91    		 GO:0004553 ... G0RVK1 31666327
    137077 6rwg:A (-1.00) BS01 ZN ? GO:0003676 ... P12493 32717487
    137078 6rwg:A (-1.00) BS02 ZN ? GO:0003676 ... P12493 32717487
    137079 6rwh:A (1.68) BS04 CA ? GO:0000122 ... P31947 32501690
    137080 6rwh:A (1.68) BS05 MG ? GO:0000122 ... P31947 32501690
    137081 6rwi:A (1.65) BS03 CA ? GO:0000122 ... P31947 32501690
    137082 6rwl:A (3.36) BS04 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137083 6rwl:B (3.36) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137084 6rwl:C (3.36) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137085 6rwl:E (3.36) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137086 6rwl:I (3.36) BS04 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137087 6rwl:J (3.36) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137088 6rwl:K (3.36) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137089 6rwl:M (3.36) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137090 6rwm:A (2.81) BS05 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137091 6rwm:A (2.81) BS06 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137092 6rwm:A (2.81) BS07 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137093 6rwm:B (2.81) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137094 6rwm:C (2.81) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137095 6rwm:E (2.81) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137096 6rwm:I (2.81) BS05 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137097 6rwm:I (2.81) BS06 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137098 6rwm:I (2.81) BS07 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137099 6rwm:J (2.81) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137100 6rwm:K (2.81) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137101 6rwm:M (2.81) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137102 6rwn:A (3.1) BS03 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137103 6rwn:A (3.1) BS05 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137104 6rwn:A (3.1) BS06 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137105 6rwn:B (3.1) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137106 6rwn:C (3.1) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137107 6rwn:E (3.1) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137108 6rwn:I (3.1) BS04 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137109 6rwn:I (3.1) BS06 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137110 6rwn:I (3.1) BS07 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137111 6rwn:J (3.1) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137112 6rwn:K (3.1) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137113 6rwn:M (3.1) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137114 6rwo:A (3.05) BS03 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137115 6rwo:A (3.05) BS05 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137116 6rwo:A (3.05) BS06 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137117 6rwo:B (3.05) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137118 6rwo:C (3.05) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137119 6rwo:E (3.05) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137120 6rwo:I (3.05) BS03 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137121 6rwo:I (3.05) BS05 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137122 6rwo:I (3.05) BS06 MG 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137123 6rwo:J (3.05) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137124 6rwo:K (3.05) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137125 6rwo:M (3.05) BS01 ZN 3.1.13.2
    3.1.26.13    		 GO:0003676 ... E1ANT8 32001525
    137126 6rws:A (1.53) BS03 MG ? GO:0000122 ... P31947 32501690
    137127 6rwz:A (1.7) BS01 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... A0A024B7W1 33717640
    137128 6rx2:A (1.82) BS02 CA ? GO:0000122 ... P31947 32501690
    137129 6rxd:A (1.65) BS01 ZN ? N/A B7GTV0 33454010
    137130 6rxd:A (1.65) BS02 ZN ? N/A B7GTV0 33454010
    137131 6rxd:B (1.65) BS01 ZN ? N/A B7GTV0 33454010
    137132 6rxd:B (1.65) BS02 ZN ? N/A B7GTV0 33454010
    137133 6rxf:A (2.397) BS01 ZN ? N/A B7GTV0 33454010
    137134 6rxf:A (2.397) BS02 ZN ? N/A B7GTV0 33454010
    137135 6rxf:A (2.397) BS03 ZN ? N/A B7GTV0 33454010
    137136 6rxf:A (2.397) BS04 ZN ? N/A B7GTV0 33454010
    137137 6rxf:A (2.397) BS05 ZN ? N/A B7GTV0 33454010
    137138 6rxf:A (2.397) BS06 ZN ? N/A B7GTV0 33454010
    137139 6rxf:B (2.397) BS01 ZN ? N/A B7GTV0 33454010
    137140 6rxf:B (2.397) BS02 ZN ? N/A B7GTV0 33454010
    137141 6rxf:B (2.397) BS03 ZN ? N/A B7GTV0 33454010
    137142 6rxf:B (2.397) BS04 ZN ? N/A B7GTV0 33454010
    137143 6rxf:B (2.397) BS05 ZN ? N/A B7GTV0 33454010
    137144 6rxf:B (2.397) BS06 ZN ? N/A B7GTV0 33454010
    137145 6rxg:A (1.71) BS02 ZN ? N/A B7GTV0 33454010
    137146 6rxg:A (1.71) BS03 ZN ? N/A B7GTV0 33454010
    137147 6rxg:B (1.71) BS02 ZN ? N/A B7GTV0 33454010
    137148 6rxg:B (1.71) BS03 ZN ? N/A B7GTV0 33454010
    137149 6rxj:A (1.6) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137150 6rxj:B (1.6) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137151 6rxk:A (1.35) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137152 6rxl:A (2.3) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137153 6rxm:A (1.92) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137154 6rxm:B (1.92) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137155 6rxm:C (1.92) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137156 6rxm:D (1.92) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137157 6rxm:E (1.92) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137158 6rxm:F (1.92) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137159 6rxn:A (1.5) BS01 FE ? GO:0005506 ... P04170 2091025
    137160 6rxo:A (1.95) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137161 6rxo:B (1.95) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137162 6rxp:A (1.8) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137163 6rxp:B (1.8) BS03 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137164 6rxs:A (1.599) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 32187803
    137165 6rxt:CI (7.0) BS04 MG ? GO:0000462 ... G0S445 31378463
    137166 6rxt:UX (7.0) BS03 ZN N/A GO:0032040 ... N/A 31378463
    137167 6rxu:CI (3.5) BS04 MG ? GO:0000462 ... G0S445 31378463
    137168 6rxu:UX (3.5) BS03 ZN N/A GO:0032040 ... N/A 31378463
    137169 6rxv:CI (4.0) BS04 MG ? GO:0000462 ... G0S445 31378463
    137170 6rxv:UX (4.0) BS03 ZN N/A GO:0032040 ... N/A 31378463
    137171 6rxy:UX (4.7) BS03 ZN N/A GO:0032040 ... N/A 31378463
    137172 6rxz:UX (4.4) BS03 ZN N/A GO:0032040 ... N/A 31378463
    137173 6ry0:A (1.05) BS01 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137174 6ry1:A (1.3) BS01 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137175 6ry1:A (1.3) BS02 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137176 6ry2:A (1.3) BS01 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137177 6ry2:A (1.3) BS02 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137178 6ry5:A (1.3) BS03 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137179 6ry6:A (1.3) BS02 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137180 6ry7:A (1.3) BS02 CA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    137181 6ryf:A (1.72) BS02 ZN 3.4.11.- GO:0001525 ... Q9NZ08 31843903
    137182 6ryg:A (0.974) BS01 CA ? N/A P23805 31562242
    137183 6ryj:A (1.25) BS01 CA ? N/A P23805 31562242
    137184 6ryj:A (1.25) BS02 CA ? N/A P23805 31562242
    137185 6rym:A (1.46) BS01 CA ? N/A P23805 31562242
    137186 6rym:A (1.46) BS02 CA ? N/A P23805 31562242
    137187 6ryn:A (1.0) BS01 CA ? N/A P23805 31562242
    137188 6ryn:A (1.0) BS02 CA ? N/A P23805 31562242
    137189 6ryo:A (1.924) BS02 ZN 3.4.23.36 GO:0004190 ... Q6GHN9 31919415
    137190 6ryr:W (3.1) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    137191 6ryr:W (3.1) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    137192 6ryu:V (4.0) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    137193 6ryu:V (4.0) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    137194 6ryu:W (4.0) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    137195 6ryu:W (4.0) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    137196 6ryv:A (2.3) BS01 CU 1.1.3.7 GO:0046872 ... E3Q9X3 N/A
    137197 6ryw:A (2.6) BS01 CU 1.1.3.7 GO:0046872 ... E3Q9X3 N/A
    137198 6ryx:A (2.65) BS01 CU 1.1.3.7 GO:0046872 ... E3Q9X3 N/A
    137199 6rz0:A (1.1) BS01 ZN 3.1.2.6 GO:0004416 ... P0AC84 N/A
    137200 6rz0:A (1.1) BS02 ZN 3.1.2.6 GO:0004416 ... P0AC84 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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