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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    136401 6rd8:M (3.08) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136402 6rd9:M (3.0) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136403 6rd9:X (3.0) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136404 6rda:M (3.04) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136405 6rdb:X (2.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136406 6rdc:M (3.2) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136407 6rdc:U (3.2) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136408 6rdd:M (3.2) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136409 6rde:U (2.9) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136410 6rde:Z (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136411 6rdf:M (3.2) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136412 6rdg:Z (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136413 6rdh:M (3.0) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136414 6rdh:X (3.0) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136415 6rdi:M (3.2) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136416 6rdi:X (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136417 6rdj:X (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136418 6rdk:M (3.7) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136419 6rdk:X (3.7) BS03 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136420 6rdl:M (3.7) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136421 6rdl:X (3.7) BS03 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136422 6rdm:X (3.44) BS03 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136423 6rdn:M (3.2) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136424 6rdn:X (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136425 6rdn:Y (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136426 6rdo:M (3.1) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136427 6rdo:X (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136428 6rdo:Y (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136429 6rdp:X (2.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136430 6rdp:Y (2.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136431 6rdq:X (4.0) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136432 6rdr:X (4.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136433 6rds:X (3.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136434 6rdt:M (3.4) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136435 6rdt:T (3.4) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136436 6rdt:X (3.4) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136437 6rdt:Y (3.4) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136438 6rdu:M (3.5) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136439 6rdu:T (3.5) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136440 6rdu:X (3.5) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136441 6rdu:Y (3.5) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136442 6rdv:T (3.1) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136443 6rdv:X (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136444 6rdv:Y (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136445 6rdw:V (3.8) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136446 6rdw:X (3.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136447 6rdw:Y (3.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136448 6rdx:V (3.9) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136449 6rdx:X (3.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136450 6rdx:Y (3.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136451 6rdy:V (3.6) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136452 6rdy:X (3.6) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136453 6rdy:Y (3.6) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136454 6rdz:M (3.5) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136455 6rdz:Y (3.5) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136456 6rdz:Z (3.5) BS03 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136457 6re0:M (3.6) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136458 6re0:Y (3.6) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136459 6re0:Z (3.6) BS03 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136460 6re1:Y (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136461 6re1:Z (3.2) BS03 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136462 6re2:Z (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136463 6re3:Z (3.3) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136464 6re4:Z (3.0) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136465 6re5:U (3.2) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136466 6re5:V (3.2) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136467 6re5:Y (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136468 6re5:Z (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136469 6re6:U (3.4) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136470 6re6:V (3.4) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136471 6re6:Y (3.4) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136472 6re6:Z (3.4) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136473 6re7:U (3.1) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136474 6re7:V (3.1) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136475 6re7:Y (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136476 6re7:Z (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136477 6re8:M (3.8) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136478 6re8:T (3.8) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136479 6re8:Y (3.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136480 6re8:Z (3.8) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136481 6re9:M (3.9) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136482 6re9:T (3.9) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136483 6re9:Y (3.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136484 6re9:Z (3.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136485 6rea:T (3.6) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136486 6rea:Y (3.6) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136487 6rea:Z (3.6) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136488 6reb:M (3.2) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136489 6reb:V (3.2) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136490 6reb:Z (3.2) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136491 6rec:M (3.3) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136492 6rec:V (3.3) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136493 6rec:Z (3.3) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136494 6red:V (3.0) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136495 6red:Z (3.0) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136496 6ree:M (3.1) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136497 6ree:X (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136498 6ree:Z (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136499 6ref:M (3.3) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136500 6ref:X (3.3) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136501 6ref:Z (3.3) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136502 6rej:A (1.65) BS01 ZN N/A N/A N/A 31321399
    136503 6rej:A (1.65) BS02 ZN N/A N/A N/A 31321399
    136504 6rej:A (1.65) BS03 ZN N/A N/A N/A 31321399
    136505 6rej:A (1.65) BS04 ZN N/A N/A N/A 31321399
    136506 6rek:A (1.1) BS01 CU N/A N/A N/A 31321399
    136507 6rek:A (1.1) BS02 CU N/A N/A N/A 31321399
    136508 6rek:A (1.1) BS03 CU N/A N/A N/A 31321399
    136509 6ren:A (1.3) BS01 ZN N/A N/A N/A 31321399
    136510 6ren:A (1.3) BS02 ZN N/A N/A N/A 31321399
    136511 6ren:A (1.3) BS03 ZN N/A N/A N/A 31321399
    136512 6ren:A (1.3) BS04 ZN N/A N/A N/A 31321399
    136513 6ren:B (1.3) BS01 ZN N/A N/A N/A 31321399
    136514 6ren:B (1.3) BS02 ZN N/A N/A N/A 31321399
    136515 6ren:B (1.3) BS03 ZN N/A N/A N/A 31321399
    136516 6ren:B (1.3) BS04 ZN N/A N/A N/A 31321399
    136517 6rep:M (3.1) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136518 6rep:V (3.1) BS02 MG ? GO:0005524 ... A0ZW40 31221832
    136519 6rep:Z (3.1) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136520 6rer:X (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136521 6rer:Z (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136522 6res:M (4.3) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136523 6ret:M (4.3) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136524 6rex:A (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136525 6rex:B (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136526 6rex:C (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136527 6rex:D (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136528 6rex:E (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136529 6rez:A (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136530 6rez:B (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136531 6rez:C (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136532 6rez:D (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136533 6rez:E (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136534 6rf0:A (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136535 6rf0:B (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136536 6rf0:C (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136537 6rf0:D (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136538 6rf0:E (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136539 6rf1:A (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136540 6rf1:B (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136541 6rf1:C (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136542 6rf1:D (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136543 6rf1:E (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136544 6rf3:A (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136545 6rf3:B (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136546 6rf3:C (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136547 6rf3:D (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136548 6rf3:E (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136549 6rf4:A (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136550 6rf4:B (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136551 6rf4:C (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136552 6rf4:D (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136553 6rf4:E (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136554 6rf5:A (2.3) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136555 6rf6:A (1.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136556 6rf9:A (1.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136557 6rfa:A (2.2) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136558 6rfb:A (2.1) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136559 6rfc:A (2.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    136560 6rfh:A (0.969) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    136561 6rfk:S (1.6) BS02 CA 3.4.21.22 GO:0004252 ... P00740 N/A
    136562 6rfl:A (2.76) BS01 MG N/A GO:0003677 ... N/A 31835032
    136563 6rfl:A (2.76) BS02 ZN N/A GO:0003677 ... N/A 31835032
    136564 6rfl:A (2.76) BS03 ZN N/A GO:0003677 ... N/A 31835032
    136565 6rfl:B (2.76) BS01 ZN N/A GO:0003677 ... N/A 31835032
    136566 6rfl:I (2.76) BS02 ZN 2.7.7.6 GO:0003700 ... Q1PIU7 31835032
    136567 6rfn:A (2.29) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136568 6rfn:B (2.29) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136569 6rfr:M (3.2) BS01 ZN ? GO:0005739 ... Q6C8J9 31844670
    136570 6rfs:M (4.04) BS01 ZN ? GO:0005739 ... Q6C8J9 31844670
    136571 6rfv:C (2.83) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136572 6rfv:D (2.83) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136573 6rfw:A (2.183) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136574 6rfw:B (2.183) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136575 6rg3:A (1.32) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31374520
    136576 6rg4:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31374520
    136577 6rg5:A (1.089) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    136578 6rgh:A (1.08) BS01 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136579 6rgh:A (1.08) BS02 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136580 6rgh:A (1.08) BS03 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136581 6rgh:A (1.08) BS04 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136582 6rgk:A (2.03) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136583 6rgk:B (2.03) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136584 6rgp:A (0.97) BS01 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136585 6rgp:A (0.97) BS02 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136586 6rgp:A (0.97) BS03 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136587 6rgp:A (0.97) BS04 CU 1.10.3.2 GO:0005507 ... I1VE66 31478903
    136588 6rgy:C (2.2) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136589 6rgy:D (2.2) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136590 6rgz:C (2.35) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136591 6rgz:D (2.35) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136592 6rh0:C (2.87) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136593 6rh0:D (2.87) BS01 MG ? GO:0000160 ... Q9WYT9 32034139
    136594 6rh3:D (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31103420
    136595 6rh3:D (3.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31103420
    136596 6rh3:D (3.6) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 31103420
    136597 6rh4:A (0.948) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    136598 6rh9:A (1.85) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    136599 6rh9:A (1.85) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    136600 6rh9:A (1.85) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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