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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    136201 6r5d:A (1.95) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136202 6r5d:E (1.95) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    136203 6r5d:E (1.95) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136204 6r5d:E (1.95) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136205 6r5e:A (1.85) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    136206 6r5e:A (1.85) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136207 6r5e:A (1.85) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136208 6r5e:E (1.85) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    136209 6r5e:E (1.85) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136210 6r5e:E (1.85) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    136211 6r5i:A (1.8) BS01 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136212 6r5i:B (1.8) BS01 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136213 6r5k:A (4.8) BS02 MG 3.1.13.4 GO:0000288 ... P53010 31104843
    136214 6r5n:A (2.0) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136215 6r5n:B (2.0) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136216 6r5o:A (2.4) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136217 6r5o:B (2.4) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136218 6r5p:A (2.85) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136219 6r5p:B (2.85) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136220 6r5q:g (3.0) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    136221 6r5q:g (3.0) BS03 MG ? GO:0003735 ... G1TXG5 31246176
    136222 6r5q:j (3.0) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    136223 6r5q:m (3.0) BS02 ZN N/A GO:0003735 ... N/A 31246176
    136224 6r5q:o (3.0) BS03 ZN ? GO:0003735 ... G1T040 31246176
    136225 6r5q:p (3.0) BS02 ZN ? GO:0003735 ... G1SY53 31246176
    136226 6r5q:y (3.0) BS03 MG ? GO:0000028 ... G1TFM5 31246176
    136227 6r5r:A (1.65) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136228 6r5r:B (1.65) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136229 6r5s:A (2.75) BS01 FE2 ? GO:0007155 ... Q9I174 31318478
    136230 6r5s:B (2.75) BS01 FE2 ? GO:0007155 ... Q9I174 31318478
    136231 6r5t:A (1.6) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136232 6r5t:B (1.6) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136233 6r5u:A (2.15) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136234 6r5u:B (2.15) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136235 6r5v:A (1.8) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136236 6r5v:B (1.8) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    136237 6r5y:C (2.15) BS01 ZN ? N/A B2J0I0 31613220
    136238 6r62:A (1.55) BS03 MG N/A GO:0003824 ... N/A N/A
    136239 6r65:A (3.5) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    136240 6r65:A (3.5) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    136241 6r65:A (3.5) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    136242 6r65:B (3.5) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    136243 6r65:B (3.5) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    136244 6r65:B (3.5) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    136245 6r6f:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31740053
    136246 6r6g:g (3.7) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    136247 6r6g:j (3.7) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    136248 6r6g:j (3.7) BS04 MG ? GO:0003735 ... U3KPD5 31246176
    136249 6r6g:m (3.7) BS02 ZN N/A GO:0003735 ... N/A 31246176
    136250 6r6g:p (3.7) BS02 ZN ? GO:0003735 ... G1SY53 31246176
    136251 6r6h:E (8.4) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 31444342
    136252 6r6j:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31740053
    136253 6r6p:g (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    136254 6r6p:g (3.1) BS03 MG ? GO:0003735 ... G1TXG5 31246176
    136255 6r6p:j (3.1) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    136256 6r6p:m (3.1) BS02 ZN N/A GO:0003735 ... N/A 31246176
    136257 6r6p:o (3.1) BS03 ZN ? GO:0003735 ... G1T040 31246176
    136258 6r6p:p (3.1) BS03 ZN ? GO:0003735 ... G1SY53 31246176
    136259 6r6y:A (1.38) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 31740053
    136260 6r6y:B (1.38) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 31740053
    136261 6r6y:C (1.38) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 31740053
    136262 6r6y:D (1.38) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 31740053
    136263 6r71:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 31740053
    136264 6r71:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 31740053
    136265 6r72:A (3.95) BS02 MG 7.6.2.- GO:0005524 ... O06967 35080979
    136266 6r72:B (3.95) BS03 MG 7.6.2.- GO:0005524 ... O06967 35080979
    136267 6r72:C (3.95) BS02 MG 7.6.2.- GO:0005524 ... O06967 35080979
    136268 6r72:D (3.95) BS03 MG 7.6.2.- GO:0005524 ... O06967 35080979
    136269 6r73:A (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136270 6r73:A (2.3) BS03 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136271 6r73:B (2.3) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136272 6r73:B (2.3) BS03 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136273 6r78:A (2.21) BS01 ZN 3.5.2.6 GO:0008270 ... G8B4G1 32205343
    136274 6r78:A (2.21) BS02 ZN 3.5.2.6 GO:0008270 ... G8B4G1 32205343
    136275 6r78:B (2.21) BS01 ZN 3.5.2.6 GO:0008270 ... G8B4G1 32205343
    136276 6r78:B (2.21) BS02 ZN 3.5.2.6 GO:0008270 ... G8B4G1 32205343
    136277 6r79:A (1.9) BS06 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136278 6r79:A (1.9) BS07 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136279 6r79:B (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136280 6r79:B (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136281 6r79:C (1.9) BS03 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136282 6r79:C (1.9) BS04 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136283 6r79:D (1.9) BS03 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136284 6r79:D (1.9) BS04 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    136285 6r7i:E (5.9) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 31444342
    136286 6r7i:R (5.9) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 31444342
    136287 6r7i:R (5.9) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 31444342
    136288 6r7n:R (6.5) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 31444342
    136289 6r7n:R (6.5) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 31444342
    136290 6r7n:R (6.5) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 31444342
    136291 6r7q:EE (3.9) BS02 MG ? GO:0003735 ... G1TRM4 31246176
    136292 6r7q:LL (3.9) BS02 ZN N/A GO:0003735 ... N/A 31246176
    136293 6r7q:g (3.9) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    136294 6r7q:g (3.9) BS03 MG ? GO:0003735 ... G1TXG5 31246176
    136295 6r7q:j (3.9) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    136296 6r7q:m (3.9) BS02 ZN N/A GO:0003735 ... N/A 31246176
    136297 6r7q:o (3.9) BS04 ZN ? GO:0003735 ... G1T040 31246176
    136298 6r7q:p (3.9) BS02 ZN ? GO:0003735 ... G1SY53 31246176
    136299 6r7q:y (3.9) BS03 MG ? GO:0000028 ... G1TFM5 31246176
    136300 6r7u:A (1.6) BS01 CA ? GO:0008237 ... G8ULV1 31949901
    136301 6r7u:A (1.6) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    136302 6r7u:A (1.6) BS03 ZN ? GO:0008237 ... G8ULV1 31949901
    136303 6r7u:B (1.6) BS01 CA ? GO:0008237 ... G8ULV1 31949901
    136304 6r7u:B (1.6) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    136305 6r7u:B (1.6) BS03 ZN ? GO:0008237 ... G8ULV1 31949901
    136306 6r7v:A (1.4) BS01 CA ? GO:0008237 ... G8ULV1 31949901
    136307 6r7v:A (1.4) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    136308 6r7v:A (1.4) BS03 ZN ? GO:0008237 ... G8ULV1 31949901
    136309 6r7w:A (1.5) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    136310 6r7w:A (1.5) BS03 CA ? GO:0008237 ... G8ULV1 31949901
    136311 6r7w:A (1.5) BS04 ZN ? GO:0008237 ... G8ULV1 31949901
    136312 6r7x:A (3.47) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    136313 6r7x:A (3.47) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    136314 6r7x:A (3.47) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    136315 6r7x:B (3.47) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    136316 6r7x:B (3.47) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    136317 6r7x:B (3.47) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    136318 6r7y:A (4.2) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    136319 6r7y:A (4.2) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    136320 6r7y:A (4.2) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    136321 6r7y:B (4.2) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    136322 6r7y:B (4.2) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    136323 6r7y:B (4.2) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    136324 6r81:A (3.9) BS03 MG 7.6.2.- GO:0005524 ... O06967 35080979
    136325 6r81:B (3.9) BS03 MG 7.6.2.- GO:0005524 ... O06967 35080979
    136326 6r86:R (3.4) BS02 ZN 3.1.-.- N/A Q04311 31189955
    136327 6r8f:A (3.8) BS01 ZN 3.4.19.- GO:0000151 ... P46736 31142841
    136328 6r8f:C (3.8) BS01 ZN 3.4.19.- GO:0000151 ... P46736 31142841
    136329 6r8s:A (2.18) BS01 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    136330 6r8t:A (2.1) BS01 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    136331 6r9n:A (2.074) BS01 FE N/A N/A N/A 31270241
    136332 6r9n:A (2.074) BS02 FE N/A N/A N/A 31270241
    136333 6r9n:B (2.074) BS01 FE N/A N/A N/A 31270241
    136334 6r9n:B (2.074) BS02 FE N/A N/A N/A 31270241
    136335 6ra0:A (2.26) BS01 ZN 2.7.11.13 N/A Q9XUJ7 31406020
    136336 6ra0:A (2.26) BS02 ZN 2.7.11.13 N/A Q9XUJ7 31406020
    136337 6ra7:A (1.2) BS01 MG 2.7.11.1 GO:0004672 ... Q9UKE5 N/A
    136338 6raf:B (3.8) BS02 MG ? GO:0005515 ... Q72J04 31316210
    136339 6rag:A (4.2) BS01 MG ? GO:0005515 ... Q72J05 31316210
    136340 6rag:B (4.2) BS01 MG ? GO:0005515 ... Q72J04 31316210
    136341 6rah:A (2.8) BS02 MG ? GO:0005515 ... Q72J05 31316210
    136342 6rah:B (2.8) BS03 MG ? GO:0005515 ... Q72J04 31316210
    136343 6rai:A (2.9) BS02 MG ? GO:0005515 ... Q72J05 31316210
    136344 6rai:B (2.9) BS03 MG ? GO:0005515 ... Q72J04 31316210
    136345 6raj:A (3.5) BS02 MG ? GO:0005515 ... Q72J05 31316210
    136346 6raj:B (3.5) BS03 MG ? GO:0005515 ... Q72J04 31316210
    136347 6rak:A (3.3) BS02 MG ? GO:0005515 ... Q72J05 31316210
    136348 6rak:B (3.3) BS03 MG ? GO:0005515 ... Q72J04 31316210
    136349 6ral:A (3.5) BS02 MG ? GO:0005515 ... Q72J05 31316210
    136350 6ral:B (3.5) BS03 MG ? GO:0005515 ... Q72J04 31316210
    136351 6ram:A (3.8) BS02 MG ? GO:0005515 ... Q72J05 31316210
    136352 6ram:B (3.8) BS02 MG ? GO:0005515 ... Q72J04 31316210
    136353 6rav:BBB (1.7) BS02 ZN 3.4.21.47 GO:0004252 ... P00751 30926668
    136354 6rb2:A (3.20001) BS01 CA 7.2.2.10 GO:0000166 ... P04191 33229570
    136355 6rb2:A (3.20001) BS02 CA 7.2.2.10 GO:0000166 ... P04191 33229570
    136356 6rb2:A (3.20001) BS04 CA 7.2.2.10 GO:0000166 ... P04191 33229570
    136357 6rb4:A (1.5) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    136358 6rb6:A (1.9) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136359 6rb6:B (1.9) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 31378593
    136360 6rb7:A (1.6) BS01 MG 4.1.3.3 GO:0005737 ... A7B555 31636419
    136361 6rb7:B (1.6) BS01 MG 4.1.3.3 GO:0005737 ... A7B555 31636419
    136362 6rb7:E (1.6) BS01 MG 4.1.3.3 GO:0005737 ... A7B555 31636419
    136363 6rb7:F (1.6) BS01 MG 4.1.3.3 GO:0005737 ... A7B555 31636419
    136364 6rbc:A (1.77) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 32097010
    136365 6rbc:A (1.77) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 32097010
    136366 6rbc:A (1.77) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 32097010
    136367 6rbf:A (2.704) BS01 CA ? N/A Q02817 31310764
    136368 6rbf:B (2.704) BS01 CA ? N/A Q02817 31310764
    136369 6rbf:C (2.704) BS01 CA ? N/A Q02817 31310764
    136370 6rbf:D (2.704) BS01 CA ? N/A Q02817 31310764
    136371 6rbi:A (2.21) BS01 ZN 1.14.11.67 N/A Q9UGL1 N/A
    136372 6rbi:A (2.21) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    136373 6rbi:A (2.21) BS04 ZN 1.14.11.67 N/A Q9UGL1 N/A
    136374 6rbj:A (2.093) BS02 MN 1.14.11.65 GO:0032454 ... Q7LBC6 N/A
    136375 6rbj:B (2.093) BS02 MN 1.14.11.65 GO:0032454 ... Q7LBC6 N/A
    136376 6rcl:A (1.97) BS02 ZN 3.1.15.- GO:0000175 ... Q9Y3B8 31588022
    136377 6rcn:A (2.25) BS02 ZN 3.1.15.- GO:0000175 ... Q9Y3B8 31588022
    136378 6rcw:A (2.08) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    136379 6rcw:B (2.08) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    136380 6rcw:C (2.08) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    136381 6rcw:D (2.08) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    136382 6rcx:A (2.0) BS02 MN ? GO:0000287 ... B1MD73 32128972
    136383 6rcx:A (2.0) BS03 MN ? GO:0000287 ... B1MD73 32128972
    136384 6rcz:A (1.74) BS01 MG 3.1.3.12 GO:0004805 ... Q63SB3 31973820
    136385 6rcz:E (1.74) BS01 MG 3.1.3.12 GO:0004805 ... Q63SB3 31973820
    136386 6rd0:A (1.9) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 31711716
    136387 6rd0:A (1.9) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 31711716
    136388 6rd0:A (1.9) BS03 CA 3.4.24.65 GO:0004222 ... P39900 31711716
    136389 6rd0:A (1.9) BS04 CA 3.4.24.65 GO:0004222 ... P39900 31711716
    136390 6rd0:A (1.9) BS05 CA 3.4.24.65 GO:0004222 ... P39900 31711716
    136391 6rd3:A (1.98) BS05 MG ? GO:0006811 ... D6QLY0 31477712
    136392 6rd3:B (1.98) BS02 MG ? GO:0006811 ... D6QLY0 31477712
    136393 6rd3:C (1.98) BS01 MG ? GO:0006811 ... D6QLY0 31477712
    136394 6rd3:D (1.98) BS01 MG ? GO:0006811 ... D6QLY0 31477712
    136395 6rd3:E (1.98) BS03 MG ? GO:0006811 ... D6QLY0 31477712
    136396 6rd3:F (1.98) BS02 MG ? GO:0006811 ... D6QLY0 31477712
    136397 6rd4:M (2.9) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136398 6rd4:X (2.9) BS02 MG 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    136399 6rd5:M (2.69) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    136400 6rd7:M (2.73) BS01 ZN ? GO:0006754 ... H8PGG3 31221832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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