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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    135201 6qde:A (1.45) BS01 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    135202 6qdf:A (1.49) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    135203 6qdg:A (1.98) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    135204 6qdh:A (1.45) BS05 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    135205 6qdi:A (1.13) BS01 CA ? N/A G8M2Z2 31162722
    135206 6qdi:A (1.13) BS02 CA ? N/A G8M2Z2 31162722
    135207 6qdi:A (1.13) BS03 CA ? N/A G8M2Z2 31162722
    135208 6qdi:A (1.13) BS04 CA ? N/A G8M2Z2 31162722
    135209 6qdr:A (1.615) BS02 CA ? GO:0000122 ... P31947 32220335
    135210 6qdt:A (1.702) BS02 CA ? GO:0000122 ... P31947 32220335
    135211 6qdv:C (3.3) BS03 MG ? GO:0000398 ... Q15029 30705154
    135212 6qdv:L (3.3) BS03 ZN ? GO:0000398 ... P41223 30705154
    135213 6qdv:L (3.3) BS04 ZN ? GO:0000398 ... P41223 30705154
    135214 6qdv:L (3.3) BS05 ZN ? GO:0000398 ... P41223 30705154
    135215 6qdv:M (3.3) BS03 ZN ? GO:0003676 ... Q9NW64 30705154
    135216 6qdv:M (3.3) BS04 ZN ? GO:0003676 ... Q9NW64 30705154
    135217 6qdv:M (3.3) BS05 ZN ? GO:0003676 ... Q9NW64 30705154
    135218 6qdy:C (1.416) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30969470
    135219 6qdy:C (1.416) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30969470
    135220 6qe7:A (2.06) BS01 CA ? N/A A3DC75 31162722
    135221 6qe7:A (2.06) BS02 CA ? N/A A3DC75 31162722
    135222 6qe7:B (2.06) BS01 CA ? N/A A3DC75 31162722
    135223 6qe7:B (2.06) BS02 CA ? N/A A3DC75 31162722
    135224 6qe7:C (2.06) BS01 CA ? N/A A3DC75 31162722
    135225 6qe7:C (2.06) BS02 CA ? N/A A3DC75 31162722
    135226 6qeb:A (-1.00) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30688395
    135227 6qed:A (1.8) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135228 6qed:A (1.8) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135229 6qef:A (1.79) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135230 6qef:A (1.79) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135231 6qeg:A (2.08) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135232 6qeg:A (2.08) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135233 6qeh:A (2.17) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135234 6qeh:A (2.17) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135235 6qei:A (1.8) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135236 6qei:A (1.8) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135237 6qej:A (1.62) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135238 6qej:A (1.62) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    135239 6qel:A (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135240 6qel:B (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135241 6qel:C (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135242 6qel:D (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135243 6qel:E (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135244 6qel:F (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135245 6qel:I (3.9) BS02 MG ? GO:0003677 ... P0AEF0 30797687
    135246 6qel:J (3.9) BS02 MG ? GO:0003677 ... P0AEF0 30797687
    135247 6qel:K (3.9) BS02 MG ? GO:0003677 ... P0AEF0 30797687
    135248 6qel:L (3.9) BS02 MG ? GO:0003677 ... P0AEF0 30797687
    135249 6qem:A (3.4) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135250 6qem:B (3.4) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135251 6qem:C (3.4) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135252 6qem:D (3.4) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135253 6qem:E (3.4) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    135254 6qep:A (2.6) BS01 MN N/A GO:0030246 ... N/A 31645583
    135255 6qep:A (2.6) BS02 MN N/A GO:0030246 ... N/A 31645583
    135256 6qep:A (2.6) BS03 MN N/A GO:0030246 ... N/A 31645583
    135257 6qep:A (2.6) BS04 MN N/A GO:0030246 ... N/A 31645583
    135258 6qev:B (2.7) BS02 MN N/A GO:0030246 ... N/A 31645583
    135259 6qev:B (2.7) BS03 MN N/A GO:0030246 ... N/A 31645583
    135260 6qev:B (2.7) BS04 MN N/A GO:0030246 ... N/A 31645583
    135261 6qev:B (2.7) BS05 MN N/A GO:0030246 ... N/A 31645583
    135262 6qf1:A (1.737) BS01 CA 3.4.21.64 GO:0004252 ... P06873 31316815
    135263 6qf2:A (1.733) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 31316815
    135264 6qf2:A (1.733) BS02 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135265 6qf2:A (1.733) BS03 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135266 6qf2:A (1.733) BS04 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135267 6qf2:A (1.733) BS05 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135268 6qf2:A (1.733) BS08 ZN 3.4.24.27 GO:0004222 ... P00800 31316815
    135269 6qf3:A (1.521) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 31316815
    135270 6qf3:A (1.521) BS02 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135271 6qf3:A (1.521) BS03 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135272 6qf3:A (1.521) BS04 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135273 6qf3:A (1.521) BS05 CA 3.4.24.27 GO:0004222 ... P00800 31316815
    135274 6qf4:A (2.495) BS01 MG 2.7.11.1 GO:0004672 ... O94768 31316815
    135275 6qfb:A (3.25) BS04 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    135276 6qfb:B (3.25) BS06 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    135277 6qfb:C (3.25) BS03 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    135278 6qfb:D (3.25) BS04 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    135279 6qfd:B (2.133) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135280 6qfd:B (2.133) BS04 MN ? GO:0046872 ... Q9HSF4 31310308
    135281 6qfd:B (2.133) BS05 MN ? GO:0046872 ... Q9HSF4 31310308
    135282 6qfd:C (2.133) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135283 6qfd:C (2.133) BS04 MN ? GO:0046872 ... Q9HSF4 31310308
    135284 6qfd:D (2.133) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135285 6qfi:A (2.4) BS02 ZN ? GO:0042981 ... Q07820 31459977
    135286 6qfk:A (2.0) BS02 MN N/A GO:0030246 ... N/A 31645583
    135287 6qfk:A (2.0) BS03 MN N/A GO:0030246 ... N/A 31645583
    135288 6qfk:A (2.0) BS04 MN N/A GO:0030246 ... N/A 31645583
    135289 6qfk:A (2.0) BS05 MN N/A GO:0030246 ... N/A 31645583
    135290 6qfm:A (2.0) BS02 ZN ? GO:0042981 ... Q07820 31459977
    135291 6qfo:A (2.3) BS01 MN N/A GO:0030246 ... N/A 31645583
    135292 6qfo:A (2.3) BS02 MN N/A GO:0030246 ... N/A 31645583
    135293 6qfo:A (2.3) BS03 MN N/A GO:0030246 ... N/A 31645583
    135294 6qfo:A (2.3) BS04 MN N/A GO:0030246 ... N/A 31645583
    135295 6qfu:A (1.8) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31080690
    135296 6qfv:A (1.45) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31080690
    135297 6qfw:A (1.2) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31080690
    135298 6qfx:A (1.32) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31080690
    135299 6qg9:A (2.05) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135300 6qg9:B (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135301 6qg9:C (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135302 6qg9:D (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135303 6qg9:E (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135304 6qg9:F (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135305 6qg9:G (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135306 6qg9:H (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135307 6qg9:I (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135308 6qg9:J (2.05) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135309 6qga:A (2.1) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135310 6qga:B (2.1) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135311 6qga:C (2.1) BS03 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135312 6qga:D (2.1) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135313 6qga:E (2.1) BS03 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135314 6qga:F (2.1) BS03 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135315 6qgb:A (2.2) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135316 6qgb:B (2.2) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135317 6qgb:C (2.2) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135318 6qgb:D (2.2) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135319 6qgb:E (2.2) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135320 6qgb:F (2.2) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    135321 6qgp:A (1.942) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    135322 6qgp:B (1.942) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    135323 6qgr:A (1.839) BS03 FE 1.12.98.1 GO:0008901 ... A0A0E3QYL7 31591784
    135324 6qgt:A (1.988) BS03 FE 1.12.98.1 GO:0008901 ... A0A0E3QYL7 31591784
    135325 6qgu:A (1.77) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    135326 6qgu:B (1.77) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    135327 6qgv:A (1.4) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 31057728
    135328 6qh0:A (2.436) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135329 6qh0:B (2.436) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135330 6qh0:C (2.436) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135331 6qh0:D (2.436) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135332 6qh4:A (1.922) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    135333 6qh4:B (1.922) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    135334 6qh4:C (1.922) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    135335 6qh4:D (1.922) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    135336 6qhj:A (1.25) BS01 CA ? N/A Q99784 31726976
    135337 6qi4:B (1.78) BS01 CA ? GO:0005245 ... P62166 31243268
    135338 6qi4:B (1.78) BS02 CA ? GO:0005245 ... P62166 31243268
    135339 6qi4:B (1.78) BS03 CA ? GO:0005245 ... P62166 31243268
    135340 6qi4:C (1.78) BS01 CA ? GO:0005245 ... P62166 31243268
    135341 6qi4:C (1.78) BS02 CA ? GO:0005245 ... P62166 31243268
    135342 6qi4:C (1.78) BS03 CA ? GO:0005245 ... P62166 31243268
    135343 6qib:A (2.8) BS05 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30968138
    135344 6qie:A (2.7) BS02 MG 3.6.4.13 GO:0003676 ... G0RY84 30828714
    135345 6qig:A (2.8) BS01 ZN 3.4.24.87 GO:0004222 ... Q76LX8 31439947
    135346 6qig:A (2.8) BS02 CA 3.4.24.87 GO:0004222 ... Q76LX8 31439947
    135347 6qig:A (2.8) BS03 CA 3.4.24.87 GO:0004222 ... Q76LX8 31439947
    135348 6qig:A (2.8) BS04 CA 3.4.24.87 GO:0004222 ... Q76LX8 31439947
    135349 6qih:A (1.42) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    135350 6qii:A (2.28) BS03 FE 1.12.98.1 GO:0008901 ... A0A0E3QYL7 31591784
    135351 6qik:g (3.1) BS02 ZN ? GO:0002181 ... P87262 31115337
    135352 6qik:i (3.1) BS03 ZN ? GO:0000448 ... P49166 31115337
    135353 6qik:l (3.1) BS02 ZN ? GO:0002181 ... P0CX27 31115337
    135354 6qik:m (3.1) BS02 ZN ? GO:0002181 ... P0CX25 31115337
    135355 6qik:t (3.1) BS02 ZN ? GO:0000027 ... P0CH08 31115337
    135356 6qik:w (3.1) BS02 ZN ? GO:0000055 ... P38861 31115337
    135357 6qik:w (3.1) BS03 ZN ? GO:0000055 ... P38861 31115337
    135358 6qil:A (2.0) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135359 6qil:A (2.0) BS04 MN ? GO:0046872 ... Q9HSF4 31310308
    135360 6qil:A (2.0) BS05 MN ? GO:0046872 ... Q9HSF4 31310308
    135361 6qil:B (2.0) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135362 6qil:B (2.0) BS04 MN ? GO:0046872 ... Q9HSF4 31310308
    135363 6qil:B (2.0) BS05 MN ? GO:0046872 ... Q9HSF4 31310308
    135364 6qil:B (2.0) BS06 MN ? GO:0046872 ... Q9HSF4 31310308
    135365 6qil:C (2.0) BS03 MN ? GO:0046872 ... Q9HSF4 31310308
    135366 6qil:C (2.0) BS04 MN ? GO:0046872 ... Q9HSF4 31310308
    135367 6qil:C (2.0) BS05 MN ? GO:0046872 ... Q9HSF4 31310308
    135368 6qil:C (2.0) BS06 MN ? GO:0046872 ... Q9HSF4 31310308
    135369 6qj6:A (1.74) BS01 MG 3.1.3.12 GO:0004805 ... Q63SB3 31973820
    135370 6qj6:E (1.74) BS01 MG 3.1.3.12 GO:0004805 ... Q63SB3 31973820
    135371 6qja:D (1.54) BS01 MG ? N/A Q14980 32413290
    135372 6qjc:A (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135373 6qjc:B (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135374 6qjc:C (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135375 6qjc:D (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135376 6qjv:A (1.905) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135377 6qjv:A (1.905) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135378 6qk0:A (2.091) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135379 6qk0:A (2.091) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135380 6qk0:B (2.091) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135381 6qk0:B (2.091) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135382 6qk1:A (1.754) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135383 6qk1:A (1.754) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135384 6qk2:A (1.596) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135385 6qk2:A (1.596) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135386 6qk2:B (1.596) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135387 6qk2:B (1.596) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    135388 6qk5:A (-1.00) BS01 ZN ? GO:0046872 ... P33187 31633358
    135389 6qk5:A (-1.00) BS02 ZN ? GO:0046872 ... P33187 31633358
    135390 6qk5:A (-1.00) BS03 ZN ? GO:0046872 ... P33187 31633358
    135391 6qk5:A (-1.00) BS04 ZN ? GO:0046872 ... P33187 31633358
    135392 6qk5:A (-1.00) BS05 ZN ? GO:0046872 ... P33187 31633358
    135393 6qk5:A (-1.00) BS06 ZN ? GO:0046872 ... P33187 31633358
    135394 6qka:A (2.1) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135395 6qka:B (2.1) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135396 6qka:C (2.1) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135397 6qka:D (2.1) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135398 6qka:E (2.1) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135399 6qka:F (2.1) BS01 FE 1.13.11.55 GO:0005737 ... P29082 N/A
    135400 6qkb:A (1.701) BS02 MG 4.1.3.41 GO:0000287 ... A1B8Z1 31723261
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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