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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    134401 6plm:A (2.592) BS01 CA 6.-.-.- N/A Q5ZTK6 31682223
    134402 6plm:A (2.592) BS02 CA 6.-.-.- N/A Q5ZTK6 31682223
    134403 6plm:B (2.592) BS01 CA 6.-.-.- N/A Q5ZTK6 31682223
    134404 6plm:B (2.592) BS02 CA 6.-.-.- N/A Q5ZTK6 31682223
    134405 6plm:C (2.592) BS01 CA ? GO:0000086 ... P0DP24 31682223
    134406 6plm:D (2.592) BS01 CA ? GO:0000086 ... P0DP24 31682223
    134407 6pme:A (3.0) BS01 ZN 2.7.10.1 GO:0004672 ... P04629 33479642
    134408 6pme:B (3.0) BS01 ZN 2.7.10.1 GO:0004672 ... P04629 33479642
    134409 6pme:C (3.0) BS01 ZN 2.7.10.1 GO:0004672 ... P04629 33479642
    134410 6pmf:B (1.95) BS01 CU ? GO:0003756 ... P0AEG4 31635355
    134411 6pmg:X (-1.00) BS01 ZN ? GO:0046872 ... Q9XUB2 32294479
    134412 6pmi:D (3.86) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32484956
    134413 6pmi:D (3.86) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32484956
    134414 6pmi:D (3.86) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 32484956
    134415 6pmj:D (3.91) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32484956
    134416 6pmj:D (3.91) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32484956
    134417 6pmj:D (3.91) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32484956
    134418 6pml:B (2.0) BS02 CU ? GO:0003756 ... P0AEG4 31635355
    134419 6pmp:A (2.73) BS01 CA 3.1.4.11 GO:0004435 ... Q99P84 32796910
    134420 6pmp:B (2.73) BS01 CA 3.1.4.11 GO:0004435 ... Q99P84 32796910
    134421 6pmp:C (2.73) BS01 CA 3.1.4.11 GO:0004435 ... Q99P84 32796910
    134422 6pmp:D (2.73) BS01 CA 3.1.4.11 GO:0004435 ... Q99P84 32796910
    134423 6pmv:A (1.8) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134424 6pmv:B (1.8) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134425 6pmw:A (1.748) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134426 6pmw:B (1.748) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134427 6pmx:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134428 6pmx:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134429 6pmy:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134430 6pmy:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134431 6pmz:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134432 6pmz:B (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134433 6pn0:A (2.229) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134434 6pn1:A (2.196) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134435 6pn1:B (2.196) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134436 6pn2:A (1.877) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134437 6pn2:B (1.877) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134438 6pn3:A (1.8) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134439 6pn3:B (1.8) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134440 6pn4:A (1.898) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134441 6pn4:B (1.898) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134442 6pn5:A (1.699) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134443 6pn5:B (1.699) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134444 6pn6:A (1.843) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134445 6pn6:B (1.843) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134446 6pn7:A (1.878) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134447 6pn7:B (1.878) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134448 6pn8:A (1.838) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134449 6pn8:B (1.838) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134450 6pn9:A (1.84) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134451 6pn9:B (1.84) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 32302123
    134452 6pna:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134453 6pna:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134454 6pnb:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134455 6pnb:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134456 6pnc:A (2.15) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134457 6pnc:B (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134458 6pnd:A (2.4) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134459 6pne:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134460 6pne:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134461 6pnf:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134462 6pnf:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134463 6png:A (1.775) BS05 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134464 6png:B (1.775) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134465 6pnh:A (1.85) BS05 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134466 6pnh:B (1.85) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134467 6pnj:L (3.19) BS06 CA ? GO:0009522 ... G6FMF1 N/A
    134468 6pnj:U (3.19) BS07 CA ? GO:0009522 ... G6FMF1 N/A
    134469 6pnj:l (3.19) BS08 CA ? GO:0009522 ... G6FMF1 N/A
    134470 6po5:A (1.82) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134471 6po5:B (1.82) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134472 6po7:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134473 6po7:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134474 6po8:A (1.898) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134475 6po8:B (1.898) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134476 6po9:A (1.808) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134477 6po9:B (1.808) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134478 6poa:A (1.809) BS05 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134479 6poa:B (1.809) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134480 6pob:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134481 6pob:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134482 6poc:A (1.998) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134483 6poc:B (1.998) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134484 6pog:B (2.755) BS01 CA ? GO:0005509 ... Q99435 32198364
    134485 6pog:B (2.755) BS02 CA ? GO:0005509 ... Q99435 32198364
    134486 6pog:B (2.755) BS03 CA ? GO:0005509 ... Q99435 32198364
    134487 6poh:B (1.67) BS01 CU ? GO:0003756 ... P0AEG4 31635355
    134488 6poi:B (1.77) BS01 CU ? GO:0003756 ... P0AEG4 31635355
    134489 6pol:B (1.8) BS01 CA ? GO:0005509 ... Q92832 32198364
    134490 6pol:D (1.8) BS01 CA ? GO:0005509 ... Q92832 32198364
    134491 6pol:F (1.8) BS01 CA ? GO:0005509 ... Q92832 32198364
    134492 6poq:B (1.8) BS01 CU ? GO:0003756 ... P0AEG4 31635355
    134493 6pot:A (2.3) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134494 6pot:B (2.3) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 32302123
    134495 6pou:A (2.194) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134496 6pou:B (2.194) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134497 6pou:C (2.194) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134498 6pou:D (2.194) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134499 6pou:E (2.194) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134500 6pou:F (2.194) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134501 6pov:A (2.047) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134502 6pov:B (2.047) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134503 6pov:C (2.047) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134504 6pov:D (2.047) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134505 6pow:A (2.15) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134506 6pow:B (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134507 6pow:C (2.15) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134508 6pow:D (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134509 6pox:A (2.197) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134510 6pox:B (2.197) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134511 6pox:C (2.197) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134512 6pox:D (2.197) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134513 6poy:A (2.3) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134514 6poy:C (2.3) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134515 6poy:D (2.3) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134516 6poz:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134517 6poz:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134518 6poz:C (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134519 6poz:D (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134520 6pp0:A (1.97) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134521 6pp0:B (1.97) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134522 6pp0:C (1.97) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134523 6pp0:D (1.97) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134524 6pp1:A (1.76) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134525 6pp1:B (1.76) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134526 6pp1:C (1.76) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134527 6pp1:D (1.76) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134528 6pp2:A (2.02) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134529 6pp2:B (2.02) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134530 6pp2:C (2.02) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134531 6pp2:D (2.02) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134532 6pp3:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134533 6pp3:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134534 6pp3:C (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134535 6pp3:D (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134536 6pp4:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134537 6pp4:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134538 6pp4:C (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134539 6pp4:D (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 32302123
    134540 6pp9:A (2.59) BS02 MG 2.7.11.1 GO:0004672 ... P15056 31581174
    134541 6pp9:B (2.59) BS02 MG 2.7.12.2 GO:0000165 ... Q02750 31581174
    134542 6ppo:U (3.2) BS01 CA ? GO:0005509 ... Q6ZTQ4 32152109
    134543 6ppo:U (3.2) BS02 CA ? GO:0005509 ... Q6ZTQ4 32152109
    134544 6ppu:A (3.5) BS02 MG 5.6.2.4 GO:0003677 ... A0QTR9 31740608
    134545 6ppw:A (1.85) BS01 MG 2.5.1.56 GO:0016051 ... H2VFG5 31549502
    134546 6ppz:A (2.4) BS02 MN 2.5.1.56 GO:0016051 ... H2VFG5 31549502
    134547 6pq0:A (2.0) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32735770
    134548 6pq0:A (2.0) BS02 CA 3.4.21.64 GO:0004252 ... P06873 32735770
    134549 6pq4:A (2.0) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32735770
    134550 6pq4:A (2.0) BS02 CA 3.4.21.64 GO:0004252 ... P06873 32735770
    134551 6pqn:A (3.01) BS01 ZN ? GO:0046872 ... B0F0C5 31723264
    134552 6pqn:B (3.01) BS01 ZN ? GO:0046872 ... B0F0C5 31723264
    134553 6pqr:A (3.4) BS05 MG ? GO:0046872 ... B0F0C5 31723264
    134554 6pqr:A (3.4) BS06 ZN ? GO:0046872 ... B0F0C5 31723264
    134555 6pqr:D (3.4) BS05 MG ? GO:0046872 ... B0F0C5 31723264
    134556 6pqr:D (3.4) BS06 ZN ? GO:0046872 ... B0F0C5 31723264
    134557 6pqu:A (3.3) BS05 MG ? GO:0046872 ... B0F0C5 31723264
    134558 6pqu:A (3.3) BS06 ZN ? GO:0046872 ... B0F0C5 31723264
    134559 6pqu:E (3.3) BS05 MG ? GO:0046872 ... B0F0C5 31723264
    134560 6pqu:E (3.3) BS06 ZN ? GO:0046872 ... B0F0C5 31723264
    134561 6pqx:A (4.6) BS06 CA ? GO:0046872 ... B0F0C5 31723264
    134562 6pqx:A (4.6) BS07 CA ? GO:0046872 ... B0F0C5 31723264
    134563 6pqx:E (4.6) BS06 CA ? GO:0046872 ... B0F0C5 31723264
    134564 6pr5:A (3.3) BS06 MG ? GO:0046872 ... B0F0C5 31723264
    134565 6pr5:A (3.3) BS07 MG ? GO:0046872 ... B0F0C5 31723264
    134566 6pr5:A (3.3) BS08 ZN ? GO:0046872 ... B0F0C5 31723264
    134567 6pr5:E (3.3) BS06 MG ? GO:0046872 ... B0F0C5 31723264
    134568 6pr5:E (3.3) BS07 MG ? GO:0046872 ... B0F0C5 31723264
    134569 6pr5:E (3.3) BS08 ZN ? GO:0046872 ... B0F0C5 31723264
    134570 6prc:L (2.3) BS05 FE2 ? GO:0009772 ... P06009 10024457
    134571 6prc:M (2.3) BS03 FE2 ? GO:0009772 ... P06010 10024457
    134572 6prm:A (2.5) BS01 CA N/A N/A N/A 31886414
    134573 6prm:B (2.5) BS01 CA N/A N/A N/A 31886414
    134574 6prm:C (2.5) BS01 CA N/A N/A N/A 31886414
    134575 6prm:D (2.5) BS01 CA N/A N/A N/A 31886414
    134576 6pro:A (2.263) BS01 MN 1.15.1.1 GO:0004784 ... P00449 N/A
    134577 6pro:B (2.263) BS01 MN 1.15.1.1 GO:0004784 ... P00449 N/A
    134578 6pru:A (1.539) BS02 MG ? N/A Q8DLC7 31852825
    134579 6pru:B (1.539) BS02 MG ? N/A Q8DLC7 31852825
    134580 6psd:A (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134581 6psd:C (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134582 6psd:E (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134583 6psd:G (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134584 6psd:I (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134585 6psd:K (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134586 6psd:M (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134587 6psd:O (2.66) BS02 CA ? GO:0005509 ... Q9BSW2 33173051
    134588 6psm:A (1.95) BS01 CA N/A N/A N/A 31886414
    134589 6psm:B (1.95) BS01 CA N/A N/A N/A 31886414
    134590 6psm:C (1.95) BS01 CA N/A N/A N/A 31886414
    134591 6psm:D (1.95) BS01 CA N/A N/A N/A 31886414
    134592 6psm:E (1.95) BS01 CA N/A N/A N/A 31886414
    134593 6psm:F (1.95) BS01 CA N/A N/A N/A 31886414
    134594 6psn:A (4.6) BS01 CA ? GO:0005576 ... P13423 32047164
    134595 6psn:A (4.6) BS02 CA ? GO:0005576 ... P13423 32047164
    134596 6psn:B (4.6) BS01 CA ? GO:0005576 ... P13423 32047164
    134597 6psn:B (4.6) BS02 CA ? GO:0005576 ... P13423 32047164
    134598 6psn:C (4.6) BS01 CA ? GO:0005576 ... P13423 32047164
    134599 6psn:C (4.6) BS02 CA ? GO:0005576 ... P13423 32047164
    134600 6psn:D (4.6) BS01 CA ? GO:0005576 ... P13423 32047164

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218