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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133801 6ovy:D (2.999) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133802 6ovy:D (2.999) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133803 6ovy:D (2.999) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133804 6ovz:A (2.017) BS01 ZN 3.5.2.6 N/A E5KIY2 31145588
    133805 6ovz:A (2.017) BS02 ZN 3.5.2.6 N/A E5KIY2 31145588
    133806 6ovz:A (2.017) BS03 ZN 3.5.2.6 N/A E5KIY2 31145588
    133807 6ovz:A (2.017) BS04 CA 3.5.2.6 N/A E5KIY2 31145588
    133808 6ovz:B (2.017) BS02 ZN 3.5.2.6 N/A E5KIY2 31145588
    133809 6ovz:B (2.017) BS03 ZN 3.5.2.6 N/A E5KIY2 31145588
    133810 6ovz:B (2.017) BS04 ZN 3.5.2.6 N/A E5KIY2 31145588
    133811 6ovz:B (2.017) BS05 CA 3.5.2.6 N/A E5KIY2 31145588
    133812 6ow3:D (2.766) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133813 6ow3:D (2.766) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133814 6ow3:D (2.766) BS07 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133815 6owh:A (2.0) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 32118427
    133816 6owi:A (1.75) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 32118427
    133817 6owm:A (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133818 6owm:A (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133819 6owm:B (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133820 6owm:B (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133821 6own:A (1.95) BS01 ZN 3.6.4.12 N/A A0R7F4 32665276
    133822 6own:B (1.95) BS01 ZN 3.6.4.12 N/A A0R7F4 32665276
    133823 6own:C (1.95) BS01 ZN 3.6.4.12 N/A A0R7F4 32665276
    133824 6owp:A (1.14) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133825 6owp:A (1.14) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133826 6owp:B (1.14) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133827 6owp:B (1.14) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 31994873
    133828 6owu:F (1.84) BS01 ZN ? GO:0030908 ... Q6TER0 31600193
    133829 6owx:B (2.06) BS01 ZN ? GO:0042597 ... P77754 31793902
    133830 6oxa:QD (3.25) BS03 MG ? GO:0003723 ... P80373 31501867
    133831 6oxa:QF (3.25) BS02 MG ? GO:0003735 ... Q5SLP8 31501867
    133832 6oxa:QN (3.25) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    133833 6oxa:R0 (3.25) BS04 MG ? GO:0003735 ... P60493 31501867
    133834 6oxa:R5 (3.25) BS02 ZN ? GO:0003735 ... P80339 31501867
    133835 6oxa:R6 (3.25) BS02 ZN ? GO:0000049 ... P35871 31501867
    133836 6oxa:R9 (3.25) BS02 ZN ? GO:0003735 ... Q5SHR2 31501867
    133837 6oxa:RD (3.25) BS03 MG ? GO:0002181 ... P60405 31501867
    133838 6oxa:RF (3.25) BS02 MG ? GO:0003735 ... Q5SHN9 31501867
    133839 6oxa:RQ (3.25) BS03 MG ? GO:0000049 ... P60489 31501867
    133840 6oxa:RY (3.25) BS02 MG ? GO:0003723 ... Q5SHP9 31501867
    133841 6oxa:XE (3.25) BS02 MG ? GO:0003723 ... Q5SHQ5 31501867
    133842 6oxa:XF (3.25) BS02 MG ? GO:0003735 ... Q5SLP8 31501867
    133843 6oxa:XM (3.25) BS03 MG ? GO:0000049 ... P80377 31501867
    133844 6oxa:XN (3.25) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    133845 6oxa:Y4 (3.25) BS02 ZN ? GO:0003735 ... Q5SJE1 31501867
    133846 6oxa:Y6 (3.25) BS02 ZN ? GO:0000049 ... P35871 31501867
    133847 6oxa:Y9 (3.25) BS02 MG ? GO:0003735 ... Q5SHR2 31501867
    133848 6oxa:YD (3.25) BS02 MG ? GO:0002181 ... P60405 31501867
    133849 6oxa:YD (3.25) BS03 MG ? GO:0002181 ... P60405 31501867
    133850 6oxa:YD (3.25) BS04 MG ? GO:0002181 ... P60405 31501867
    133851 6oxa:YE (3.25) BS02 MG ? GO:0003735 ... Q5SHN8 31501867
    133852 6oxa:YF (3.25) BS02 MG ? GO:0003735 ... Q5SHN9 31501867
    133853 6oxa:YQ (3.25) BS03 MG ? GO:0000049 ... P60489 31501867
    133854 6oxh:A (1.92) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    133855 6oxh:B (1.92) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    133856 6oxi:QK (3.495) BS02 MG ? GO:0003735 ... P80376 31501867
    133857 6oxi:QN (3.495) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    133858 6oxi:R5 (3.495) BS02 ZN ? GO:0003735 ... P80339 31501867
    133859 6oxi:R6 (3.495) BS02 ZN ? GO:0000049 ... P35871 31501867
    133860 6oxi:R9 (3.495) BS02 ZN ? GO:0003735 ... Q5SHR2 31501867
    133861 6oxi:RQ (3.495) BS04 MG ? GO:0000049 ... P60489 31501867
    133862 6oxi:RQ (3.495) BS05 MG ? GO:0000049 ... P60489 31501867
    133863 6oxi:RY (3.495) BS02 MG ? GO:0003723 ... Q5SHP9 31501867
    133864 6oxi:XF (3.495) BS02 MG ? GO:0003735 ... Q5SLP8 31501867
    133865 6oxi:XK (3.495) BS02 MG ? GO:0003735 ... P80376 31501867
    133866 6oxi:XM (3.495) BS03 MG ? GO:0000049 ... P80377 31501867
    133867 6oxi:XN (3.495) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    133868 6oxi:Y6 (3.495) BS02 ZN ? GO:0000049 ... P35871 31501867
    133869 6oxi:Y9 (3.495) BS02 MG ? GO:0003735 ... Q5SHR2 31501867
    133870 6oxi:YD (3.495) BS02 MG ? GO:0002181 ... P60405 31501867
    133871 6oxi:YD (3.495) BS03 MG ? GO:0002181 ... P60405 31501867
    133872 6oxi:YG (3.495) BS04 MG ? GO:0000049 ... Q5SHQ0 31501867
    133873 6oxi:YQ (3.495) BS03 MG ? GO:0000049 ... P60489 31501867
    133874 6oxi:YR (3.495) BS02 MG ? GO:0003735 ... Q9Z9H5 31501867
    133875 6oxj:A (1.55) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    133876 6oxj:B (1.55) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    133877 6oy3:A (4.0) BS01 CA ? GO:0005254 ... C7Z7K1 31672969
    133878 6oy3:A (4.0) BS02 CA ? GO:0005254 ... C7Z7K1 31672969
    133879 6oy3:B (4.0) BS01 CA ? GO:0005254 ... C7Z7K1 31672969
    133880 6oy3:B (4.0) BS02 CA ? GO:0005254 ... C7Z7K1 31672969
    133881 6oy5:D (3.1) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133882 6oy5:D (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133883 6oy5:D (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133884 6oy6:D (3.096) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133885 6oy6:D (3.096) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133886 6oy6:D (3.096) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133887 6oy7:D (3.04) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133888 6oy7:D (3.04) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133889 6oy7:D (3.04) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    133890 6oz7:A (1.36) BS01 CA 1.-.-.- GO:0016491 ... P33368 N/A
    133891 6ozf:A (1.8) BS02 CA 3.1.21.7 GO:0000287 ... Q9X2H9 31444105
    133892 6ozf:B (1.8) BS02 CA 3.1.21.7 GO:0000287 ... Q9X2H9 31444105
    133893 6ozg:A (1.93) BS02 MG 3.1.21.7 GO:0000287 ... Q9X2H9 31444105
    133894 6ozg:B (1.93) BS02 MG 3.1.21.7 GO:0000287 ... Q9X2H9 31444105
    133895 6ozh:A (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    133896 6ozh:A (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    133897 6ozh:B (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    133898 6ozh:B (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    133899 6ozh:C (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    133900 6ozh:C (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    133901 6ozh:D (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    133902 6ozh:D (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    133903 6ozk:A (2.104) BS03 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133904 6ozk:A (2.104) BS04 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133905 6ozk:B (2.104) BS03 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133906 6ozk:B (2.104) BS04 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133907 6ozl:A (2.1) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133908 6ozl:A (2.1) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133909 6ozl:B (2.1) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133910 6ozl:B (2.1) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133911 6ozm:A (2.15) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133912 6ozm:A (2.15) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133913 6ozm:B (2.15) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133914 6ozm:B (2.15) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133915 6ozn:A (1.9) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133916 6ozn:A (1.9) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133917 6ozn:B (1.9) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133918 6ozn:B (1.9) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133919 6ozo:A (2.235) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133920 6ozo:A (2.235) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133921 6ozo:B (2.235) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133922 6ozo:B (2.235) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133923 6ozo:B (2.235) BS05 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133924 6ozp:A (1.96) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133925 6ozp:A (1.96) BS05 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133926 6ozp:B (1.96) BS04 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133927 6ozp:B (1.96) BS05 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133928 6ozq:A (2.153) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133929 6ozq:B (2.153) BS03 MN 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133930 6ozr:A (2.15) BS03 MG 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133931 6ozr:B (2.15) BS03 MG 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133932 6ozs:A (2.41) BS04 MG 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133933 6ozs:A (2.41) BS05 MG 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133934 6ozs:B (2.41) BS04 MG 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133935 6ozs:B (2.41) BS05 MG 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    133936 6ozw:A (2.063) BS01 MG 5.6.2.1 GO:0003677 ... Q8DUD3 31204053
    133937 6ozw:A (2.063) BS02 MG 5.6.2.1 GO:0003677 ... Q8DUD3 31204053
    133938 6ozw:A (2.063) BS03 MG 5.6.2.1 GO:0003677 ... Q8DUD3 31204053
    133939 6p01:B (1.89) BS01 MG 2.7.7.- GO:0016740 ... P05058 N/A
    133940 6p04:B (2.3) BS03 MG 2.7.7.- GO:0016740 ... P05058 N/A
    133941 6p06:A (2.3) BS03 CA 2.7.7.- GO:0016740 ... P05058 N/A
    133942 6p06:A (2.3) BS04 CA 2.7.7.- GO:0016740 ... P05058 N/A
    133943 6p06:B (2.3) BS04 CA 2.7.7.- GO:0016740 ... P05058 N/A
    133944 6p06:B (2.3) BS06 CA 2.7.7.- GO:0016740 ... P05058 N/A
    133945 6p07:B (3.2) BS04 MG 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    133946 6p07:C (3.2) BS03 MG 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    133947 6p07:D (3.2) BS04 MG 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    133948 6p07:E (3.2) BS04 MG 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    133949 6p08:A (2.27) BS02 MG 2.7.7.- GO:0016740 ... P05058 N/A
    133950 6p08:A (2.27) BS03 MG 2.7.7.- GO:0016740 ... P05058 N/A
    133951 6p08:D (2.27) BS05 MG 2.7.7.- GO:0016740 ... P05058 N/A
    133952 6p08:D (2.27) BS06 MG 2.7.7.- GO:0016740 ... P05058 N/A
    133953 6p0r:A (2.4) BS02 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133954 6p0r:A (2.4) BS03 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133955 6p0r:A (2.4) BS04 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133956 6p0r:A (2.4) BS05 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133957 6p0r:B (2.4) BS02 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133958 6p0r:B (2.4) BS03 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133959 6p0r:B (2.4) BS04 ZN 2.1.1.355 GO:0005634 ... Q9H5I1 N/A
    133960 6p16:A (1.913) BS01 CU N/A N/A N/A 31527086
    133961 6p16:B (1.913) BS01 CU N/A N/A N/A 31527086
    133962 6p18:D (3.5) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31455742
    133963 6p18:D (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31455742
    133964 6p18:D (3.5) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 31455742
    133965 6p19:D (3.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31455742
    133966 6p19:D (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31455742
    133967 6p19:D (3.8) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 31455742
    133968 6p1d:A (2.4) BS02 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133969 6p1d:B (2.4) BS03 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133970 6p1d:C (2.4) BS03 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133971 6p1d:D (2.4) BS03 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133972 6p1g:A (2.05) BS01 CU ? N/A A0A2D2CWX5 31527086
    133973 6p1g:A (2.05) BS02 ZN ? N/A A0A2D2CWX5 31527086
    133974 6p1g:B (2.05) BS01 CU ? N/A A0A2D2CWX5 31527086
    133975 6p1g:B (2.05) BS02 ZN ? N/A A0A2D2CWX5 31527086
    133976 6p1h:A (3.2) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    133977 6p1h:A (3.2) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    133978 6p1h:A (3.2) BS07 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    133979 6p1i:A (2.74) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    133980 6p1i:A (2.74) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    133981 6p1k:J (4.05) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 31841111
    133982 6p1k:J (4.05) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31841111
    133983 6p1l:A (2.8) BS01 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133984 6p1l:B (2.8) BS01 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133985 6p1l:C (2.8) BS01 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133986 6p1l:D (2.8) BS01 MG 2.7.10.1 GO:0004672 ... P00533 31749909
    133987 6p1n:A (1.6) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133988 6p1n:A (1.6) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133989 6p1o:A (1.65) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133990 6p1o:A (1.65) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133991 6p1p:A (1.75) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133992 6p1p:A (1.75) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133993 6p1q:A (1.9) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133994 6p1q:A (1.9) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133995 6p1r:A (1.701) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133996 6p1r:A (1.701) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133997 6p1s:A (1.75) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133998 6p1t:A (1.7) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    133999 6p1t:A (1.7) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    134000 6p1u:A (1.75) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 31435651

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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