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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133401 6om0:k (3.1) BS03 ZN ? GO:0003735 ... P61927 31160784
    133402 6om0:p (3.1) BS03 ZN ? GO:0002181 ... P83881 31160784
    133403 6om0:q (3.1) BS02 ZN ? GO:0002181 ... P61513 31160784
    133404 6om1:A (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    133405 6om1:A (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    133406 6om1:A (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    133407 6om1:A (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    133408 6om1:B (2.66) BS01 MG ? N/A P26012 31792290
    133409 6om1:B (2.66) BS02 CA ? N/A P26012 31792290
    133410 6om1:C (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    133411 6om1:C (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    133412 6om1:C (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    133413 6om1:C (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    133414 6om1:D (2.66) BS01 MG ? N/A P26012 31792290
    133415 6om1:D (2.66) BS02 CA ? N/A P26012 31792290
    133416 6om1:E (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    133417 6om1:E (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    133418 6om1:E (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    133419 6om1:E (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    133420 6om1:F (2.66) BS01 MG ? N/A P26012 31792290
    133421 6om1:F (2.66) BS02 CA ? N/A P26012 31792290
    133422 6om1:G (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    133423 6om1:G (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    133424 6om1:G (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    133425 6om1:G (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    133426 6om1:H (2.66) BS01 MG ? N/A P26012 31792290
    133427 6om1:H (2.66) BS02 CA ? N/A P26012 31792290
    133428 6om2:A (2.77) BS02 CA ? GO:0007155 ... P06756 31792290
    133429 6om2:A (2.77) BS03 CA ? GO:0007155 ... P06756 31792290
    133430 6om2:A (2.77) BS04 CA ? GO:0007155 ... P06756 31792290
    133431 6om2:A (2.77) BS05 CA ? GO:0007155 ... P06756 31792290
    133432 6om2:B (2.77) BS02 MG ? N/A P26012 31792290
    133433 6om2:B (2.77) BS03 CA ? N/A P26012 31792290
    133434 6om2:C (2.77) BS03 CA ? GO:0007155 ... P06756 31792290
    133435 6om2:C (2.77) BS04 CA ? GO:0007155 ... P06756 31792290
    133436 6om2:C (2.77) BS05 CA ? GO:0007155 ... P06756 31792290
    133437 6om2:C (2.77) BS06 CA ? GO:0007155 ... P06756 31792290
    133438 6om2:D (2.77) BS02 CA ? N/A P26012 31792290
    133439 6om2:D (2.77) BS03 MG ? N/A P26012 31792290
    133440 6om4:A (1.7) BS03 ZN ? GO:0004792 ... Q47506 30881667
    133441 6om4:B (1.7) BS03 ZN ? GO:0004792 ... Q47506 30881667
    133442 6om4:B (1.7) BS04 MG ? GO:0004792 ... Q47506 30881667
    133443 6om7:SF (3.7) BS02 MG ? GO:0000028 ... P46782 31160784
    133444 6om7:Sa (3.7) BS02 ZN ? GO:0003735 ... P62854 31160784
    133445 6om7:Sf (3.7) BS02 ZN ? GO:0003735 ... P62979 31160784
    133446 6om7:b (3.7) BS02 MG ? GO:0002181 ... P46776 31160784
    133447 6om7:k (3.7) BS03 ZN ? GO:0003735 ... P61927 31160784
    133448 6om7:q (3.7) BS02 ZN ? GO:0002181 ... P61513 31160784
    133449 6ome:A (1.95) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O84049 N/A
    133450 6ome:A (1.95) BS03 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O84049 N/A
    133451 6omf:D (3.26) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 31484766
    133452 6omf:D (3.26) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31484766
    133453 6omf:D (3.26) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31484766
    133454 6omk:A (2.1) BS02 ZN 2.3.1.97 GO:0004379 ... Q9GPZ4 N/A
    133455 6omp:A (1.7) BS01 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133456 6omp:A (1.7) BS02 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133457 6omp:A (1.7) BS03 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133458 6omp:B (1.7) BS01 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133459 6omp:B (1.7) BS02 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133460 6omp:B (1.7) BS03 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133461 6omq:A (1.86) BS01 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133462 6omq:A (1.86) BS02 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133463 6omq:A (1.86) BS03 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133464 6omq:B (1.86) BS02 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133465 6omq:B (1.86) BS03 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133466 6omq:B (1.86) BS04 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133467 6omr:A (2.45) BS01 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133468 6omr:A (2.45) BS02 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133469 6omr:B (2.45) BS02 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133470 6omr:B (2.45) BS03 MN ? GO:0005737 ... A0A0A0UVH9 31291107
    133471 6on1:A (1.982) BS01 FE ? GO:0046872 ... A0A5H1ZR51 31180203
    133472 6on1:B (1.982) BS01 FE ? GO:0046872 ... A0A5H1ZR51 31180203
    133473 6on1:C (1.982) BS01 FE ? GO:0046872 ... A0A5H1ZR51 31180203
    133474 6on1:D (1.982) BS01 FE ? GO:0046872 ... A0A5H1ZR51 31180203
    133475 6on1:E (1.982) BS01 FE ? GO:0046872 ... A0A5H1ZR51 31180203
    133476 6on1:F (1.982) BS01 FE ? GO:0046872 ... A0A5H1ZR51 31180203
    133477 6on2:D (3.0) BS03 MG 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    133478 6on2:E (3.0) BS02 MG 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    133479 6on3:A (2.31) BS02 FE2 ? GO:0046872 ... A0A5H1ZR51 31180203
    133480 6on3:B (2.31) BS02 FE2 ? GO:0046872 ... A0A5H1ZR51 31180203
    133481 6on3:C (2.31) BS02 FE2 ? GO:0046872 ... A0A5H1ZR51 31180203
    133482 6on3:D (2.31) BS01 FE2 ? GO:0046872 ... A0A5H1ZR51 31180203
    133483 6on3:E (2.31) BS02 FE2 ? GO:0046872 ... A0A5H1ZR51 31180203
    133484 6on3:F (2.31) BS01 FE2 ? GO:0046872 ... A0A5H1ZR51 31180203
    133485 6on4:A (2.1) BS02 ZN ? GO:0001046 ... P0A8W0 23935044
    133486 6on5:A (1.638) BS01 ZN ? GO:0005501 ... P50120 31557439
    133487 6onm:A (2.7) BS01 MN 4.2.3.20 GO:0000287 ... A0A1C9J6A7 31433159
    133488 6onm:A (2.7) BS02 MN 4.2.3.20 GO:0000287 ... A0A1C9J6A7 31433159
    133489 6ont:A (1.803) BS01 CA ? GO:0000160 ... A0Q7V5 32232010
    133490 6op1:A (1.7) BS02 MG 1.18.6.1 GO:0005524 ... P07328 31356071
    133491 6op1:A (1.7) BS03 MG 1.18.6.1 GO:0005524 ... P07328 31356071
    133492 6op1:B (1.7) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133493 6op1:B (1.7) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133494 6op1:D (1.7) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133495 6op1:D (1.7) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133496 6op2:B (1.9) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133497 6op2:B (1.9) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133498 6op2:D (1.9) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133499 6op2:D (1.9) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133500 6op3:A (1.6) BS04 CA 1.18.6.1 GO:0005524 ... P07328 31356071
    133501 6op3:B (1.6) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133502 6op3:B (1.6) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133503 6op3:D (1.6) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133504 6op3:D (1.6) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133505 6op3:D (1.6) BS04 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133506 6op4:B (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133507 6op4:B (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133508 6op4:D (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133509 6op4:D (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    133510 6op6:A (1.25) BS01 ZN 3.5.2.6 GO:0016787 ... A0A344X7M2 31744917
    133511 6op6:A (1.25) BS02 ZN 3.5.2.6 GO:0016787 ... A0A344X7M2 31744917
    133512 6op6:A (1.25) BS03 ZN 3.5.2.6 GO:0016787 ... A0A344X7M2 31744917
    133513 6op7:A (1.37) BS01 ZN 3.5.2.6 GO:0016787 ... A0A344X7M2 31744917
    133514 6opd:A (1.791) BS02 MG ? N/A P04439 31555277
    133515 6ope:QF (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 32601241
    133516 6ope:QM (3.1) BS02 MG ? GO:0000049 ... P80377 32601241
    133517 6ope:QN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    133518 6ope:R9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    133519 6ope:RF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    133520 6ope:RP (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 32601241
    133521 6ope:XF (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 32601241
    133522 6ope:XL (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 32601241
    133523 6ope:XM (3.1) BS02 MG ? GO:0000049 ... P80377 32601241
    133524 6ope:XN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    133525 6ope:Y6 (3.1) BS02 MG ? GO:0000049 ... P35871 32601241
    133526 6ope:Y9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    133527 6ope:YP (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 32601241
    133528 6ope:YQ (3.1) BS04 MG ? GO:0000049 ... P60489 32601241
    133529 6ope:YQ (3.1) BS05 MG ? GO:0000049 ... P60489 32601241
    133530 6ope:YX (3.1) BS02 MG ? GO:0000027 ... Q5SHP0 32601241
    133531 6opg:A (2.9) BS02 MG 2.7.11.24 GO:0000165 ... P28482 31311868
    133532 6opm:A (3.1) BS03 CA 3.1.-.- GO:0003676 ... A0A0F8IEL4 31913120
    133533 6opm:C (3.1) BS03 CA 3.1.-.- GO:0003676 ... A0A0F8IEL4 31913120
    133534 6oq3:B (1.85) BS01 MG 3.6.5.2 GO:0003924 ... P61224 N/A
    133535 6oq4:B (1.754) BS01 MG 3.6.5.2 GO:0003924 ... P61224 N/A
    133536 6oq5:A (3.87) BS01 ZN ? GO:0005515 ... M4NKV9 31308519
    133537 6oq5:A (3.87) BS02 MG ? GO:0005515 ... M4NKV9 31308519
    133538 6oq7:A (2.39) BS03 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 31308519
    133539 6oq7:A (2.39) BS04 MG 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 31308519
    133540 6oqa:D (2.2) BS02 MG ? N/A Q9BV73 32606248
    133541 6oqq:A (2.102) BS03 MG 6.-.-.- GO:0000166 ... Q5ZTK6 31123136
    133542 6oqq:B (2.102) BS01 CA ? GO:0000131 ... P06787 31123136
    133543 6oqq:B (2.102) BS02 CA ? GO:0000131 ... P06787 31123136
    133544 6oqq:C (2.102) BS04 MG 6.-.-.- GO:0000166 ... Q5ZTK6 31123136
    133545 6oqq:D (2.102) BS01 CA ? GO:0000131 ... P06787 31123136
    133546 6oqq:D (2.102) BS02 CA ? GO:0000131 ... P06787 31123136
    133547 6oqr:F (3.1) BS02 MG 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    133548 6oqw:F (3.1) BS02 MG 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    133549 6oqz:A (1.6) BS01 MN 5.3.1.5 GO:0000287 ... P24300 31793898
    133550 6oqz:A (1.6) BS02 MN 5.3.1.5 GO:0000287 ... P24300 31793898
    133551 6oqz:A (1.6) BS03 MG 5.3.1.5 GO:0000287 ... P24300 31793898
    133552 6or7:A (2.53) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31301259
    133553 6or7:A (2.53) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31301259
    133554 6ord:QB (3.1) BS02 MG ? GO:0003735 ... P80371 32601241
    133555 6ord:QD (3.1) BS03 MG ? GO:0003723 ... P80373 32601241
    133556 6ord:QD (3.1) BS04 MG ? GO:0003723 ... P80373 32601241
    133557 6ord:QM (3.1) BS02 MG ? GO:0000049 ... P80377 32601241
    133558 6ord:QN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    133559 6ord:QT (3.1) BS02 MG ? GO:0003723 ... P80380 32601241
    133560 6ord:R0 (3.1) BS04 MG ? GO:0003735 ... P60493 32601241
    133561 6ord:R0 (3.1) BS05 MG ? GO:0003735 ... P60493 32601241
    133562 6ord:R3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 32601241
    133563 6ord:R4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 32601241
    133564 6ord:R5 (3.1) BS02 ZN ? GO:0003735 ... P80339 32601241
    133565 6ord:R6 (3.1) BS02 ZN ? GO:0000049 ... P35871 32601241
    133566 6ord:R7 (3.1) BS02 MG ? GO:0003735 ... P80340 32601241
    133567 6ord:R9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    133568 6ord:RD (3.1) BS03 MG ? GO:0002181 ... P60405 32601241
    133569 6ord:RD (3.1) BS04 MG ? GO:0002181 ... P60405 32601241
    133570 6ord:RD (3.1) BS05 MG ? GO:0002181 ... P60405 32601241
    133571 6ord:RD (3.1) BS06 MG ? GO:0002181 ... P60405 32601241
    133572 6ord:RE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    133573 6ord:RE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    133574 6ord:RF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    133575 6ord:RF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 32601241
    133576 6ord:RF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 32601241
    133577 6ord:RG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    133578 6ord:RG (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 32601241
    133579 6ord:RQ (3.1) BS03 MG ? GO:0000049 ... P60489 32601241
    133580 6ord:RQ (3.1) BS04 MG ? GO:0000049 ... P60489 32601241
    133581 6ord:RU (3.1) BS02 MG ? GO:0000027 ... P60491 32601241
    133582 6ord:RU (3.1) BS03 MG ? GO:0000027 ... P60491 32601241
    133583 6ord:RV (3.1) BS02 MG ? GO:0003723 ... P60492 32601241
    133584 6ord:RV (3.1) BS03 MG ? GO:0003723 ... P60492 32601241
    133585 6ord:RV (3.1) BS04 MG ? GO:0003723 ... P60492 32601241
    133586 6ord:RW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 32601241
    133587 6ord:RY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 32601241
    133588 6ord:XF (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 32601241
    133589 6ord:XK (3.1) BS02 MG ? GO:0003735 ... P80376 32601241
    133590 6ord:XL (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 32601241
    133591 6ord:XN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    133592 6ord:Y4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 32601241
    133593 6ord:Y5 (3.1) BS02 ZN ? GO:0003735 ... P80339 32601241
    133594 6ord:Y6 (3.1) BS02 ZN ? GO:0000049 ... P35871 32601241
    133595 6ord:Y7 (3.1) BS02 MG ? GO:0003735 ... P80340 32601241
    133596 6ord:Y9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    133597 6ord:YD (3.1) BS03 MG ? GO:0002181 ... P60405 32601241
    133598 6ord:YD (3.1) BS04 MG ? GO:0002181 ... P60405 32601241
    133599 6ord:YD (3.1) BS05 MG ? GO:0002181 ... P60405 32601241
    133600 6ord:YD (3.1) BS06 MG ? GO:0002181 ... P60405 32601241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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