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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133001 6oeq:C (4.3) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133002 6oer:A (3.29) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133003 6oer:A (3.29) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133004 6oer:A (3.29) BS07 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133005 6oer:C (3.29) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133006 6oer:C (3.29) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133007 6oer:C (3.29) BS07 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015552
    133008 6oes:A (3.06) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133009 6oes:A (3.06) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133010 6oes:C (3.06) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133011 6oes:C (3.06) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133012 6oet:A (3.4) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133013 6oet:A (3.4) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133014 6oet:C (3.4) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133015 6oet:C (3.4) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0002250 ... P15919 32015553
    133016 6oev:C (3.8) BS01 ZN 3.1.-.- GO:0007267 ... Q15465 29995851
    133017 6of1:10 (2.8) BS03 MG ? GO:0003735 ... P60493 30936109
    133018 6of1:10 (2.8) BS04 MG ? GO:0003735 ... P60493 30936109
    133019 6of1:11 (2.8) BS02 MG ? GO:0003735 ... P60494 30936109
    133020 6of1:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 30936109
    133021 6of1:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 30936109
    133022 6of1:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 30936109
    133023 6of1:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 30936109
    133024 6of1:15 (2.8) BS02 MG ? GO:0003735 ... P80339 30936109
    133025 6of1:15 (2.8) BS03 MG ? GO:0003735 ... P80339 30936109
    133026 6of1:15 (2.8) BS04 ZN ? GO:0003735 ... P80339 30936109
    133027 6of1:16 (2.8) BS02 MG ? GO:0000049 ... P35871 30936109
    133028 6of1:16 (2.8) BS03 MG ? GO:0000049 ... P35871 30936109
    133029 6of1:16 (2.8) BS04 ZN ? GO:0000049 ... P35871 30936109
    133030 6of1:17 (2.8) BS02 MG ? GO:0003735 ... P80340 30936109
    133031 6of1:17 (2.8) BS03 MG ? GO:0003735 ... P80340 30936109
    133032 6of1:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 30936109
    133033 6of1:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 30936109
    133034 6of1:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 30936109
    133035 6of1:1D (2.8) BS03 MG ? GO:0002181 ... P60405 30936109
    133036 6of1:1D (2.8) BS04 MG ? GO:0002181 ... P60405 30936109
    133037 6of1:1D (2.8) BS05 MG ? GO:0002181 ... P60405 30936109
    133038 6of1:1D (2.8) BS06 MG ? GO:0002181 ... P60405 30936109
    133039 6of1:1D (2.8) BS07 MG ? GO:0002181 ... P60405 30936109
    133040 6of1:1D (2.8) BS08 MG ? GO:0002181 ... P60405 30936109
    133041 6of1:1D (2.8) BS09 MG ? GO:0002181 ... P60405 30936109
    133042 6of1:1D (2.8) BS10 MG ? GO:0002181 ... P60405 30936109
    133043 6of1:1D (2.8) BS11 MG ? GO:0002181 ... P60405 30936109
    133044 6of1:1D (2.8) BS12 MG ? GO:0002181 ... P60405 30936109
    133045 6of1:1D (2.8) BS13 MG ? GO:0002181 ... P60405 30936109
    133046 6of1:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 30936109
    133047 6of1:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 30936109
    133048 6of1:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 30936109
    133049 6of1:1E (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 30936109
    133050 6of1:1E (2.8) BS06 MG ? GO:0003735 ... Q5SHN8 30936109
    133051 6of1:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 30936109
    133052 6of1:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 30936109
    133053 6of1:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 30936109
    133054 6of1:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 30936109
    133055 6of1:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 30936109
    133056 6of1:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 30936109
    133057 6of1:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 30936109
    133058 6of1:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 30936109
    133059 6of1:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 30936109
    133060 6of1:1G (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 30936109
    133061 6of1:1N (2.8) BS02 MG ? GO:0003729 ... P60488 30936109
    133062 6of1:1N (2.8) BS03 MG ? GO:0003729 ... P60488 30936109
    133063 6of1:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 30936109
    133064 6of1:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 30936109
    133065 6of1:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 30936109
    133066 6of1:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 30936109
    133067 6of1:1P (2.8) BS05 MG ? GO:0003735 ... Q5SHQ7 30936109
    133068 6of1:1P (2.8) BS06 MG ? GO:0003735 ... Q5SHQ7 30936109
    133069 6of1:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 30936109
    133070 6of1:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 30936109
    133071 6of1:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 30936109
    133072 6of1:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 30936109
    133073 6of1:1R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 30936109
    133074 6of1:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 30936109
    133075 6of1:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 30936109
    133076 6of1:1U (2.8) BS02 MG ? GO:0000027 ... P60491 30936109
    133077 6of1:1U (2.8) BS03 MG ? GO:0000027 ... P60491 30936109
    133078 6of1:1U (2.8) BS04 MG ? GO:0000027 ... P60491 30936109
    133079 6of1:1U (2.8) BS05 MG ? GO:0000027 ... P60491 30936109
    133080 6of1:1U (2.8) BS06 MG ? GO:0000027 ... P60491 30936109
    133081 6of1:1U (2.8) BS07 MG ? GO:0000027 ... P60491 30936109
    133082 6of1:1U (2.8) BS08 MG ? GO:0000027 ... P60491 30936109
    133083 6of1:1U (2.8) BS09 MG ? GO:0000027 ... P60491 30936109
    133084 6of1:1V (2.8) BS02 MG ? GO:0003723 ... P60492 30936109
    133085 6of1:1V (2.8) BS03 MG ? GO:0003723 ... P60492 30936109
    133086 6of1:1V (2.8) BS04 MG ? GO:0003723 ... P60492 30936109
    133087 6of1:1V (2.8) BS05 MG ? GO:0003723 ... P60492 30936109
    133088 6of1:1V (2.8) BS06 MG ? GO:0003723 ... P60492 30936109
    133089 6of1:1V (2.8) BS07 MG ? GO:0003723 ... P60492 30936109
    133090 6of1:1V (2.8) BS08 MG ? GO:0003723 ... P60492 30936109
    133091 6of1:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 30936109
    133092 6of1:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 30936109
    133093 6of1:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 30936109
    133094 6of1:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 30936109
    133095 6of1:1X (2.8) BS04 MG ? GO:0000027 ... Q5SHP0 30936109
    133096 6of1:1X (2.8) BS05 MG ? GO:0000027 ... Q5SHP0 30936109
    133097 6of1:1X (2.8) BS06 MG ? GO:0000027 ... Q5SHP0 30936109
    133098 6of1:1Y (2.8) BS02 MG ? GO:0003723 ... Q5SHP9 30936109
    133099 6of1:1Y (2.8) BS03 ZN ? GO:0003723 ... Q5SHP9 30936109
    133100 6of1:1b (2.8) BS02 MG ? GO:0003735 ... P80371 30936109
    133101 6of1:1b (2.8) BS03 MG ? GO:0003735 ... P80371 30936109
    133102 6of1:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 30936109
    133103 6of1:1k (2.8) BS02 MG ? GO:0003735 ... P80376 30936109
    133104 6of1:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 30936109
    133105 6of1:1m (2.8) BS05 MG ? GO:0000049 ... P80377 30936109
    133106 6of1:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 30936109
    133107 6of1:1t (2.8) BS02 MG ? GO:0003723 ... P80380 30936109
    133108 6of1:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 30936109
    133109 6of1:23 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 30936109
    133110 6of1:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 30936109
    133111 6of1:25 (2.8) BS02 MG ? GO:0003735 ... P80339 30936109
    133112 6of1:25 (2.8) BS03 ZN ? GO:0003735 ... P80339 30936109
    133113 6of1:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 30936109
    133114 6of1:27 (2.8) BS02 MG ? GO:0003735 ... P80340 30936109
    133115 6of1:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 30936109
    133116 6of1:2D (2.8) BS03 MG ? GO:0002181 ... P60405 30936109
    133117 6of1:2D (2.8) BS04 MG ? GO:0002181 ... P60405 30936109
    133118 6of1:2D (2.8) BS05 MG ? GO:0002181 ... P60405 30936109
    133119 6of1:2D (2.8) BS06 MG ? GO:0002181 ... P60405 30936109
    133120 6of1:2D (2.8) BS07 MG ? GO:0002181 ... P60405 30936109
    133121 6of1:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 30936109
    133122 6of1:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 30936109
    133123 6of1:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 30936109
    133124 6of1:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 30936109
    133125 6of1:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 30936109
    133126 6of1:2G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 30936109
    133127 6of1:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 30936109
    133128 6of1:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 30936109
    133129 6of1:2Q (2.8) BS06 MG ? GO:0000049 ... P60489 30936109
    133130 6of1:2T (2.8) BS03 MG ? GO:0003735 ... P60490 30936109
    133131 6of1:2U (2.8) BS02 MG ? GO:0000027 ... P60491 30936109
    133132 6of1:2U (2.8) BS03 MG ? GO:0000027 ... P60491 30936109
    133133 6of1:2V (2.8) BS02 MG ? GO:0003723 ... P60492 30936109
    133134 6of1:2V (2.8) BS03 MG ? GO:0003723 ... P60492 30936109
    133135 6of1:2V (2.8) BS04 MG ? GO:0003723 ... P60492 30936109
    133136 6of1:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 30936109
    133137 6of1:2W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 30936109
    133138 6of1:2X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 30936109
    133139 6of1:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 30936109
    133140 6of1:2Z (2.8) BS02 MG ? GO:0003723 ... Q5SHZ1 30936109
    133141 6of1:2d (2.8) BS02 MG ? GO:0003723 ... P80373 30936109
    133142 6of1:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 30936109
    133143 6of1:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 30936109
    133144 6of1:2k (2.8) BS02 MG ? GO:0003735 ... P80376 30936109
    133145 6of1:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 30936109
    133146 6of1:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 30936109
    133147 6of1:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 30936109
    133148 6of1:2q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 30936109
    133149 6of1:2q (2.8) BS03 MG ? GO:0003735 ... P0DOY7 30936109
    133150 6of5:A (2.3) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 31445230
    133151 6of5:A (2.3) BS02 FE 3.1.3.2 GO:0003993 ... P80366 31445230
    133152 6of5:B (2.3) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 31445230
    133153 6of5:B (2.3) BS02 FE 3.1.3.2 GO:0003993 ... P80366 31445230
    133154 6of5:C (2.3) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 31445230
    133155 6of5:C (2.3) BS02 FE 3.1.3.2 GO:0003993 ... P80366 31445230
    133156 6of5:D (2.3) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 31445230
    133157 6of5:D (2.3) BS02 FE 3.1.3.2 GO:0003993 ... P80366 31445230
    133158 6of6:QD (3.2) BS03 MG ? GO:0003723 ... P80373 32601241
    133159 6of6:QF (3.2) BS02 MG ? GO:0003735 ... Q5SLP8 32601241
    133160 6of6:QK (3.2) BS02 MG ? GO:0003735 ... P80376 32601241
    133161 6of6:QL (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 32601241
    133162 6of6:QL (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 32601241
    133163 6of6:QM (3.2) BS03 MG ? GO:0000049 ... P80377 32601241
    133164 6of6:QN (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    133165 6of6:RE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    133166 6of6:RE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    133167 6of6:RE (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 32601241
    133168 6of6:RF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    133169 6of6:RG (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    133170 6of6:RP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 32601241
    133171 6of6:RP (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 32601241
    133172 6of6:RP (3.2) BS04 MG ? GO:0003735 ... Q5SHQ7 32601241
    133173 6of6:RR (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 32601241
    133174 6of6:RT (3.2) BS03 MG ? GO:0003735 ... P60490 32601241
    133175 6of6:RT (3.2) BS04 MG ? GO:0003735 ... P60490 32601241
    133176 6of6:XB (3.2) BS02 MG ? GO:0003735 ... P80371 32601241
    133177 6of6:XD (3.2) BS03 MG ? GO:0003723 ... P80373 32601241
    133178 6of6:XJ (3.2) BS02 MG ? GO:0000049 ... Q5SHN7 32601241
    133179 6of6:XK (3.2) BS02 MG ? GO:0003735 ... P80376 32601241
    133180 6of6:XL (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 32601241
    133181 6of6:XL (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 32601241
    133182 6of6:XN (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    133183 6of6:Y0 (3.2) BS04 MG ? GO:0003735 ... P60493 32601241
    133184 6of6:Y3 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 32601241
    133185 6of6:Y4 (3.2) BS03 MG ? GO:0003735 ... Q5SJE1 32601241
    133186 6of6:Y4 (3.2) BS04 MG ? GO:0003735 ... Q5SJE1 32601241
    133187 6of6:Y8 (3.2) BS02 MG ? GO:0003735 ... Q5SKU1 32601241
    133188 6of6:Y8 (3.2) BS03 MG ? GO:0003735 ... Q5SKU1 32601241
    133189 6of6:YD (3.2) BS02 MG ? GO:0002181 ... P60405 32601241
    133190 6of6:YD (3.2) BS03 MG ? GO:0002181 ... P60405 32601241
    133191 6of6:YD (3.2) BS04 MG ? GO:0002181 ... P60405 32601241
    133192 6of6:YE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    133193 6of6:YE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    133194 6of6:YE (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 32601241
    133195 6of6:YF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    133196 6of6:YG (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    133197 6of6:YG (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 32601241
    133198 6of6:YG (3.2) BS06 MG ? GO:0000049 ... Q5SHQ0 32601241
    133199 6of6:YH (3.2) BS02 MG ? GO:0002181 ... P0DOY8 32601241
    133200 6of6:YH (3.2) BS03 MG ? GO:0002181 ... P0DOY8 32601241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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