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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    132401 6nvy:B (2.27) BS03 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132402 6nvy:B (2.27) BS04 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132403 6nvy:B (2.27) BS05 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132404 6nvy:C (2.27) BS01 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132405 6nvy:D (2.27) BS01 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132406 6nvy:D (2.27) BS02 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132407 6nvy:D (2.27) BS03 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132408 6nvy:D (2.27) BS04 CA ? GO:0016787 ... A0A0F5I5V4 31227867
    132409 6nw5:A (1.7) BS01 ZN ? GO:0004177 ... Q9X0E0 31611236
    132410 6nw5:A (1.7) BS02 CO ? GO:0004177 ... Q9X0E0 31611236
    132411 6nw5:B (1.7) BS01 ZN ? GO:0004177 ... Q9X0E0 31611236
    132412 6nw5:B (1.7) BS02 CO ? GO:0004177 ... Q9X0E0 31611236
    132413 6nw5:C (1.7) BS01 ZN ? GO:0004177 ... Q9X0E0 31611236
    132414 6nw5:C (1.7) BS02 CO ? GO:0004177 ... Q9X0E0 31611236
    132415 6nw5:D (1.7) BS01 ZN ? GO:0004177 ... Q9X0E0 31611236
    132416 6nw5:D (1.7) BS02 CO ? GO:0004177 ... Q9X0E0 31611236
    132417 6nwa:L (3.48) BS08 CA ? GO:0005886 ... P37277 31133699
    132418 6nwa:U (3.48) BS02 CA ? GO:0005886 ... P37277 31133699
    132419 6nwa:l (3.48) BS01 CA ? GO:0005886 ... P37277 31133699
    132420 6nwh:A (2.03) BS03 HG ? GO:0006355 ... Q8XMB9 31282473
    132421 6nwh:A (2.03) BS04 HG ? GO:0006355 ... Q8XMB9 31282473
    132422 6nwh:B (2.03) BS03 HG ? GO:0006355 ... Q8XMB9 31282473
    132423 6nwh:B (2.03) BS04 HG ? GO:0006355 ... Q8XMB9 31282473
    132424 6nwy:QF (3.5) BS02 MG ? GO:0003735 ... Q5SLP8 33016876
    132425 6nwy:QN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    132426 6nwy:R5 (3.5) BS02 ZN ? GO:0003735 ... P80339 33016876
    132427 6nwy:R6 (3.5) BS02 ZN ? GO:0000049 ... P35871 33016876
    132428 6nwy:R9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    132429 6nwy:RF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 33016876
    132430 6nwy:RF (3.5) BS03 MG ? GO:0003735 ... Q5SHN9 33016876
    132431 6nwy:RY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    132432 6nwy:XN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    132433 6nwy:Y2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 33016876
    132434 6nwy:Y5 (3.5) BS02 ZN ? GO:0003735 ... P80339 33016876
    132435 6nwy:Y6 (3.5) BS02 ZN ? GO:0000049 ... P35871 33016876
    132436 6nwy:Y9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    132437 6nwy:YD (3.5) BS02 MG ? GO:0002181 ... P60405 33016876
    132438 6nwy:YD (3.5) BS03 MG ? GO:0002181 ... P60405 33016876
    132439 6nwy:YQ (3.5) BS03 MG ? GO:0000049 ... P60489 33016876
    132440 6nwy:YY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    132441 6nwz:A (2.6) BS02 ZN ? N/A Q4WX15 32415073
    132442 6nwz:A (2.6) BS03 ZN ? N/A Q4WX15 32415073
    132443 6nwz:A (2.6) BS04 ZN ? N/A Q4WX15 32415073
    132444 6nwz:A (2.6) BS05 ZN ? N/A Q4WX15 32415073
    132445 6nwz:A (2.6) BS06 ZN ? N/A Q4WX15 32415073
    132446 6nxg:A (1.6) BS01 MG 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    132447 6nxg:B (1.6) BS01 MG 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    132448 6nxg:C (1.6) BS02 MG 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    132449 6nxi:A (1.61) BS02 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    132450 6nxi:A (1.61) BS03 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    132451 6nxj:A (1.92) BS02 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    132452 6nxj:A (1.92) BS03 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    132453 6nxj:B (1.92) BS02 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    132454 6nxj:B (1.92) BS03 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    132455 6ny6:B (3.74) BS02 MG ? GO:0003735 ... P80371 31501867
    132456 6ny6:M (3.74) BS02 MG ? GO:0000049 ... P80377 31501867
    132457 6ny6:N (3.74) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    132458 6ny7:A (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    132459 6ny7:A (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    132460 6nyb:A (4.1) BS02 ZN 2.7.11.1 GO:0000165 ... P15056 31581174
    132461 6nyb:A (4.1) BS03 ZN 2.7.11.1 GO:0000165 ... P15056 31581174
    132462 6nyb:B (4.1) BS02 MG 2.7.12.2 GO:0000165 ... Q02750 31581174
    132463 6nyd:C (1.65) BS01 ZN 2.3.2.23 N/A P14682 31341161
    132464 6nyd:C (1.65) BS02 ZN 2.3.2.23 N/A P14682 31341161
    132465 6nyd:C (1.65) BS03 ZN 2.3.2.23 N/A P14682 31341161
    132466 6nyt:A (1.369) BS01 CA ? GO:0005509 ... Q62768 20154707
    132467 6nyt:A (1.369) BS02 CA ? GO:0005509 ... Q62768 20154707
    132468 6nyy:A (3.0) BS01 ZN 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132469 6nyy:B (3.0) BS04 ZN 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132470 6nyy:C (3.0) BS04 ZN 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132471 6nyy:D (3.0) BS05 MG 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132472 6nyy:D (3.0) BS06 ZN 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132473 6nyy:E (3.0) BS04 ZN 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132474 6nyy:F (3.0) BS01 ZN 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    132475 6nz0:Z (2.4) BS01 MG ? N/A Q8IZA0 31115336
    132476 6nzg:A (2.43) BS02 CA 3.2.1.23
    3.2.1.31
    GO:0004553 ... A0A414F142 31774274
    132477 6nzg:B (2.43) BS02 CA 3.2.1.23
    3.2.1.31
    GO:0004553 ... A0A414F142 31774274
    132478 6nzl:A (-1.00) BS01 ZN ? GO:0003729 ... G5EF15 N/A
    132479 6nzl:A (-1.00) BS02 ZN ? GO:0003729 ... G5EF15 N/A
    132480 6nzo:S (3.8) BS01 ZN 2.1.1.359 GO:0005634 ... G0S676 31439846
    132481 6nzo:S (3.8) BS02 ZN 2.1.1.359 GO:0005634 ... G0S676 31439846
    132482 6nzt:A (1.4) BS02 ZN 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0006508 ... S4UY05 31133531
    132483 6nzu:D (3.2) BS01 ZN ? GO:0005506 ... Q9H1K1 31101807
    132484 6nzu:H (3.2) BS01 ZN ? GO:0005506 ... Q9H1K1 31101807
    132485 6nzv:A (1.55) BS02 ZN 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0006508 ... S4UY05 31133531
    132486 6o04:C (2.5) BS02 MG 2.2.1.9 GO:0000287 ... P9WK11 32029475
    132487 6o04:D (2.5) BS01 MG 2.2.1.9 GO:0000287 ... P9WK11 32029475
    132488 6o0g:C (2.4) BS02 MG 2.2.1.9 GO:0000287 ... P9WK11 32029475
    132489 6o0g:D (2.4) BS02 MG 2.2.1.9 GO:0000287 ... P9WK11 32029475
    132490 6o0j:C (2.35) BS02 MG 2.2.1.9 GO:0000287 ... P9WK11 32029475
    132491 6o0j:D (2.35) BS02 MG 2.2.1.9 GO:0000287 ... P9WK11 32029475
    132492 6o19:A (1.596) BS03 ZN ? GO:0000981 ... O13658 31010807
    132493 6o19:A (1.596) BS04 ZN ? GO:0000981 ... O13658 31010807
    132494 6o1e:A (2.41) BS01 ZN ? GO:0008270 ... Q14149 30850548
    132495 6o1t:A (2.3) BS01 CA ? GO:0001530 ... P79125 30978191
    132496 6o1t:B (2.3) BS01 CA ? GO:0001530 ... P79125 30978191
    132497 6o1v:A (3.2) BS03 MG 5.6.1.6 GO:0005254 ... P13569 31221859
    132498 6o1v:A (3.2) BS04 MG 5.6.1.6 GO:0005254 ... P13569 31221859
    132499 6o20:F (3.3) BS02 CA ? GO:0000922 ... P62157 30975749
    132500 6o20:F (3.3) BS03 CA ? GO:0000922 ... P62157 30975749
    132501 6o20:F (3.3) BS04 CA ? GO:0000922 ... P62157 30975749
    132502 6o20:F (3.3) BS05 CA ? GO:0000922 ... P62157 30975749
    132503 6o2p:A (3.3) BS02 MG 5.6.1.6 GO:0005254 ... P13569 31221859
    132504 6o2p:A (3.3) BS03 MG 5.6.1.6 GO:0005254 ... P13569 31221859
    132505 6o2q:A (3.7) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132506 6o2q:C (3.7) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132507 6o2q:E (3.7) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132508 6o2q:J (3.7) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132509 6o2q:K (3.7) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132510 6o2q:L (3.7) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132511 6o2r:A (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132512 6o2r:C (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132513 6o2r:E (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132514 6o2r:J (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132515 6o2r:K (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132516 6o2r:L (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31072936
    132517 6o38:A (2.595) BS01 ZN ? GO:0008237 ... A0A5H1ZR49 31320476
    132518 6o38:B (2.595) BS01 ZN ? GO:0008237 ... A0A5H1ZR49 31320476
    132519 6o38:C (2.595) BS01 ZN ? GO:0008237 ... A0A5H1ZR49 31320476
    132520 6o38:D (2.595) BS01 ZN ? GO:0008237 ... A0A5H1ZR49 31320476
    132521 6o38:E (2.595) BS01 ZN ? GO:0008237 ... A0A5H1ZR49 31320476
    132522 6o38:F (2.595) BS01 ZN ? GO:0008237 ... A0A5H1ZR49 31320476
    132523 6o3m:QM (3.97) BS02 MG ? GO:0000049 ... P80377 33016876
    132524 6o3m:R5 (3.97) BS02 ZN ? GO:0003735 ... P80339 33016876
    132525 6o3m:R6 (3.97) BS02 ZN ? GO:0000049 ... P35871 33016876
    132526 6o3m:R9 (3.97) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    132527 6o3m:RD (3.97) BS03 MG ? GO:0002181 ... P60405 33016876
    132528 6o3m:RF (3.97) BS02 MG ? GO:0003735 ... Q5SHN9 33016876
    132529 6o3m:RY (3.97) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    132530 6o3m:XE (3.97) BS02 MG ? GO:0003723 ... Q5SHQ5 33016876
    132531 6o3m:XK (3.97) BS02 MG ? GO:0003735 ... P80376 33016876
    132532 6o3m:XN (3.97) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    132533 6o3m:Y5 (3.97) BS02 ZN ? GO:0003735 ... P80339 33016876
    132534 6o3m:Y6 (3.97) BS02 ZN ? GO:0000049 ... P35871 33016876
    132535 6o3m:Y9 (3.97) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    132536 6o3m:YD (3.97) BS03 MG ? GO:0002181 ... P60405 33016876
    132537 6o3m:YD (3.97) BS04 MG ? GO:0002181 ... P60405 33016876
    132538 6o3m:YQ (3.97) BS03 MG ? GO:0000049 ... P60489 33016876
    132539 6o3m:YR (3.97) BS02 MG ? GO:0003735 ... Q9Z9H5 33016876
    132540 6o3m:YY (3.97) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    132541 6o3p:A (1.6) BS02 MG 3.6.1.-
    3.6.1.22
    GO:0016787 ... Q9DCN1 31101919
    132542 6o3p:A (1.6) BS03 MG 3.6.1.-
    3.6.1.22
    GO:0016787 ... Q9DCN1 31101919
    132543 6o3p:A (1.6) BS04 ZN 3.6.1.-
    3.6.1.22
    GO:0016787 ... Q9DCN1 31101919
    132544 6o3p:B (1.6) BS02 ZN 3.6.1.-
    3.6.1.22
    GO:0016787 ... Q9DCN1 31101919
    132545 6o3p:B (1.6) BS04 MG 3.6.1.-
    3.6.1.22
    GO:0016787 ... Q9DCN1 31101919
    132546 6o3p:B (1.6) BS05 MG 3.6.1.-
    3.6.1.22
    GO:0016787 ... Q9DCN1 31101919
    132547 6o3r:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    132548 6o3r:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    132549 6o44:A (1.83) BS01 CA 3.4.21.62 GO:0004252 ... P04189 30914195
    132550 6o44:A (1.83) BS02 CA 3.4.21.62 GO:0004252 ... P04189 30914195
    132551 6o44:B (1.83) BS01 CA 3.4.21.62 GO:0004252 ... P04189 30914195
    132552 6o44:B (1.83) BS02 CA 3.4.21.62 GO:0004252 ... P04189 30914195
    132553 6o47:A (2.196) BS01 ZN 2.7.7.86 N/A Q8N884 31142647
    132554 6o49:A (1.85) BS02 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132555 6o49:B (1.85) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132556 6o49:B (1.85) BS03 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132557 6o4a:A (2.1) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132558 6o4a:B (2.1) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132559 6o4a:C (2.1) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132560 6o4a:D (2.1) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    N/A
    132561 6o4n:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... B0BA40 N/A
    132562 6o4n:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... B0BA40 N/A
    132563 6o5c:A (3.1) BS01 MN ? GO:0003677 ... A0A0H2UTK0 31188450
    132564 6o5c:B (3.1) BS01 MN ? GO:0003677 ... A0A0H2UTK0 31188450
    132565 6o5c:B (3.1) BS02 MN ? GO:0003677 ... A0A0H2UTK0 31188450
    132566 6o5g:A (1.89) BS02 CA ? GO:0000086 ... P0DP23 31337679
    132567 6o5g:A (1.89) BS03 CA ? GO:0000086 ... P0DP23 31337679
    132568 6o5g:A (1.89) BS04 CA ? GO:0000086 ... P0DP23 31337679
    132569 6o5g:A (1.89) BS05 CA ? GO:0000086 ... P0DP23 31337679
    132570 6o5g:A (1.89) BS06 ZN ? GO:0000086 ... P0DP23 31337679
    132571 6o5h:A (2.84) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 31751136
    132572 6o5h:B (2.84) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 31751136
    132573 6o5h:C (2.84) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 31751136
    132574 6o5k:A (1.6) BS01 ZN 2.3.2.27 GO:0008270 ... Q62318 31078555
    132575 6o5k:A (1.6) BS02 ZN 2.3.2.27 GO:0008270 ... Q62318 31078555
    132576 6o5k:B (1.6) BS01 ZN 2.3.2.27 GO:0008270 ... Q62318 31078555
    132577 6o5k:B (1.6) BS02 ZN 2.3.2.27 GO:0008270 ... Q62318 31078555
    132578 6o5m:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31251599
    132579 6o5m:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31251599
    132580 6o5n:A (3.003) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31251599
    132581 6o5n:B (3.003) BS02 MG ? GO:0000226 ... P02554 31251599
    132582 6o5n:C (3.003) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31251599
    132583 6o5o:B (1.75) BS02 MG ? N/A P98082 N/A
    132584 6o5t:A (2.1) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31483651
    132585 6o5t:A (2.1) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31483651
    132586 6o5t:B (2.1) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31483651
    132587 6o5t:B (2.1) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31483651
    132588 6o5w:A (1.412) BS01 ZN ? GO:0008270 ... Q14149 31006586
    132589 6o60:B (2.503) BS01 ZN 2.5.1.60 GO:0003824 ... P53611 31209342
    132590 6o61:A (2.599) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31251599
    132591 6o61:C (2.599) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31251599
    132592 6o6c:A (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 31200019
    132593 6o6c:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 31200019
    132594 6o6c:A (3.1) BS05 MG 2.7.7.6 GO:0000428 ... P04050 31200019
    132595 6o6c:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 31200019
    132596 6o6c:C (3.1) BS01 ZN ? GO:0000428 ... P16370 31200019
    132597 6o6c:G (3.1) BS01 ZN ? GO:0000428 ... P27999 31200019
    132598 6o6c:G (3.1) BS02 ZN ? GO:0000428 ... P27999 31200019
    132599 6o6c:H (3.1) BS01 ZN ? GO:0000428 ... P22139 31200019
    132600 6o6c:J (3.1) BS01 ZN ? GO:0000428 ... P40422 31200019

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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