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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    132001 6nh8:B (1.8) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132002 6nh8:C (1.8) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132003 6nh8:D (1.8) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132004 6nhb:A (2.03) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 30802056
    132005 6nhb:B (2.03) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 30802056
    132006 6nhc:A (2.16) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 30802056
    132007 6nhc:B (2.16) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 30802056
    132008 6nhd:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 30802056
    132009 6nhe:A (1.999) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 30802056
    132010 6nhe:B (1.999) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 30802056
    132011 6nhf:A (1.83) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132012 6nhf:B (1.83) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132013 6nhf:C (1.83) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132014 6nhf:D (1.83) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30802056
    132015 6nhl:A (2.101) BS01 FE N/A GO:0003824 ... N/A 30341796
    132016 6nie:A (1.95) BS02 FE2 1.14.20.- GO:0008652 ... G8XHD5 31548692
    132017 6nie:B (1.95) BS02 FE2 1.14.20.- GO:0008652 ... G8XHD5 31548692
    132018 6nie:C (1.95) BS02 FE2 1.14.20.- GO:0008652 ... G8XHD5 31548692
    132019 6nie:D (1.95) BS02 FE2 1.14.20.- GO:0008652 ... G8XHD5 31548692
    132020 6nj2:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132021 6nj2:B (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132022 6nj3:A (1.01) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132023 6nj4:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132024 6nj5:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132025 6nj6:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132026 6nj6:B (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31525993
    132027 6njc:A (1.9) BS01 MG ? GO:0004622 ... A6L7S9 N/A
    132028 6njc:B (1.9) BS01 MG ? GO:0004622 ... A6L7S9 N/A
    132029 6njd:B (2.05) BS01 MG ? GO:0046872 ... A0A509GV61 31110362
    132030 6njh:A (2.15) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132031 6njh:B (2.15) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132032 6njh:C (2.15) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132033 6njh:D (2.15) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132034 6nji:A (2.45) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132035 6nji:B (2.45) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132036 6njj:A (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132037 6njj:B (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132038 6njj:C (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132039 6njj:D (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31013090
    132040 6njo:D (3.34) BS02 MG 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    132041 6njv:A (2.3) BS01 MG ? N/A B0RTN2 31400118
    132042 6njw:A (1.86) BS01 MG ? N/A B0RTN2 31400118
    132043 6nk8:A (2.24) BS01 MG N/A N/A N/A 31400118
    132044 6nk8:B (2.24) BS01 MG N/A N/A N/A 31400118
    132045 6nkb:A (2.0) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132046 6nkb:C (2.0) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132047 6nkb:D (2.0) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132048 6nkn:A (2.5) BS01 CU 7.1.1.9 GO:0004129 ... P00396 30808749
    132049 6nkn:A (2.5) BS02 MG 7.1.1.9 GO:0004129 ... P00396 30808749
    132050 6nkn:F (2.5) BS01 ZN ? GO:0005740 ... P00428 30808749
    132051 6nkn:N (2.5) BS01 CU 7.1.1.9 GO:0004129 ... P00396 30808749
    132052 6nkn:N (2.5) BS02 MG 7.1.1.9 GO:0004129 ... P00396 30808749
    132053 6nkn:S (2.5) BS01 ZN ? GO:0005740 ... P00428 30808749
    132054 6nkq:B (2.3) BS01 CA ? GO:0036094 ... P02754 31584012
    132055 6nkr:A (2.45) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132056 6nks:A (2.349) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132057 6nku:A (1.9) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132058 6nkv:A (1.85) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132059 6nkw:A (1.98) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132060 6nkx:A (1.98) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132061 6nky:A (2.094) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132062 6nkz:A (2.01) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132063 6nl0:A (1.97) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31999437
    132064 6nl5:A (2.314) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132065 6nl5:B (2.314) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132066 6nl5:C (2.314) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132067 6nl5:D (2.314) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    132068 6nl6:B (1.4) BS01 ZN ? GO:0005618 ... P19909 30938154
    132069 6nl6:C (1.4) BS01 ZN ? GO:0005618 ... P19909 30938154
    132070 6nl6:D (1.4) BS01 ZN ? GO:0005618 ... P19909 30938154
    132071 6nl7:B (1.4) BS01 ZN ? GO:0005618 ... P19909 30938154
    132072 6nl8:A (1.5) BS01 ZN ? GO:0005618 ... P19909 30938154
    132073 6nl8:A (1.5) BS02 ZN ? GO:0005618 ... P19909 30938154
    132074 6nla:A (1.34) BS01 ZN ? GO:0005618 ... P19909 30938154
    132075 6nla:A (1.34) BS02 ZN ? GO:0005618 ... P19909 30938154
    132076 6nli:A (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132077 6nli:B (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132078 6nli:C (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132079 6nli:D (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132080 6nli:E (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132081 6nli:F (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132082 6nli:G (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132083 6nli:I (1.9) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132084 6nli:J (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132085 6nli:K (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132086 6nli:L (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132087 6nlk:A (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132088 6nlk:B (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132089 6nlk:C (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132090 6nlk:D (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132091 6nlk:E (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132092 6nlk:F (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132093 6nlk:G (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132094 6nlk:I (1.85) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132095 6nlk:J (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132096 6nlk:K (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132097 6nlk:L (1.85) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132098 6nll:A (1.8) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132099 6nll:B (1.8) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132100 6nll:C (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132101 6nll:D (1.8) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132102 6nll:E (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132103 6nll:F (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132104 6nll:G (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132105 6nll:I (1.8) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132106 6nll:J (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132107 6nll:K (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132108 6nll:L (1.8) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132109 6nlm:A (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132110 6nlm:B (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132111 6nlm:C (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132112 6nlm:D (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132113 6nlm:E (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132114 6nlm:F (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132115 6nlm:G (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132116 6nlm:I (1.9) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132117 6nlm:J (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132118 6nlm:K (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132119 6nlm:L (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132120 6nln:A (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132121 6nln:B (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132122 6nln:C (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132123 6nln:D (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132124 6nln:E (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132125 6nln:F (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132126 6nln:G (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132127 6nln:I (1.6) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132128 6nln:J (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132129 6nln:K (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132130 6nln:L (1.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    132131 6nlr:A (2.1) BS01 MN N/A GO:0000105 ... N/A 31794207
    132132 6nlr:A (2.1) BS02 MN N/A GO:0000105 ... N/A 31794207
    132133 6nlr:A (2.1) BS03 CO N/A GO:0000105 ... N/A 31794207
    132134 6nlr:B (2.1) BS01 CO N/A GO:0000105 ... N/A 31794207
    132135 6nlr:B (2.1) BS02 FE N/A GO:0000105 ... N/A 31794207
    132136 6nlr:B (2.1) BS03 FE N/A GO:0000105 ... N/A 31794207
    132137 6nlr:B (2.1) BS04 CA N/A GO:0000105 ... N/A 31794207
    132138 6nlr:C (2.1) BS01 MN N/A GO:0000105 ... N/A 31794207
    132139 6nlr:C (2.1) BS02 CO N/A GO:0000105 ... N/A 31794207
    132140 6nlr:C (2.1) BS03 FE N/A GO:0000105 ... N/A 31794207
    132141 6nlr:C (2.1) BS04 CA N/A GO:0000105 ... N/A 31794207
    132142 6nlv:A (1.794) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33523653
    132143 6nm0:A (1.44) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33523653
    132144 6nm4:A (2.58) BS01 ZN 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 GO:0042054 ... Q9NQV7 31848333
    132145 6nm4:B (2.58) BS01 ZN 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 GO:0042054 ... Q9NQV7 31848333
    132146 6nmf:A (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30808749
    132147 6nmf:A (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30808749
    132148 6nmf:F (2.8) BS01 ZN ? GO:0005740 ... P00428 30808749
    132149 6nmf:N (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30808749
    132150 6nmf:N (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30808749
    132151 6nmf:S (2.8) BS01 ZN ? GO:0005740 ... P00428 30808749
    132152 6nmi:E (3.7) BS01 ZN ? GO:0000439 ... Q13888 30860024
    132153 6nmi:E (3.7) BS02 ZN ? GO:0000439 ... Q13888 30860024
    132154 6nmi:F (3.7) BS01 ZN ? GO:0000438 ... Q13889 30860024
    132155 6nmi:H (3.7) BS01 ZN ? GO:0000082 ... P51948 30860024
    132156 6nml:A (2.0) BS03 MG ? GO:0000166 ... Q57514 N/A
    132157 6nml:A (2.0) BS04 MG ? GO:0000166 ... Q57514 N/A
    132158 6nml:B (2.0) BS04 MG ? GO:0000166 ... Q57514 N/A
    132159 6nml:B (2.0) BS05 MG ? GO:0000166 ... Q57514 N/A
    132160 6nmm:A (2.5) BS03 MG ? GO:0000166 ... Q57514 N/A
    132161 6nmm:A (2.5) BS04 MG ? GO:0000166 ... Q57514 N/A
    132162 6nmm:B (2.5) BS03 MG ? GO:0000166 ... Q57514 N/A
    132163 6nmm:B (2.5) BS04 MG ? GO:0000166 ... Q57514 N/A
    132164 6nmm:C (2.5) BS04 MG ? GO:0000166 ... Q57514 N/A
    132165 6nmm:C (2.5) BS05 MG ? GO:0000166 ... Q57514 N/A
    132166 6nmm:D (2.5) BS03 MG ? GO:0000166 ... Q57514 N/A
    132167 6nmm:D (2.5) BS04 MG ? GO:0000166 ... Q57514 N/A
    132168 6nmn:A (1.8) BS03 MG ? GO:0000166 ... Q57514 N/A
    132169 6nmo:A (1.45) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    132170 6nmo:B (1.45) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    132171 6nmo:C (1.45) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    132172 6nmp:A (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 30808749
    132173 6nmp:A (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 30808749
    132174 6nmp:F (2.9) BS01 ZN ? GO:0005740 ... P00428 30808749
    132175 6nmp:N (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 30808749
    132176 6nmp:N (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 30808749
    132177 6nmp:S (2.9) BS01 ZN ? GO:0005740 ... P00428 30808749
    132178 6nmq:A (1.58) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 31179408
    132179 6nn1:A (1.5) BS01 MG N/A GO:0000287 ... N/A 31041362
    132180 6nn2:A (1.44) BS01 CA N/A GO:0000287 ... N/A 31041362
    132181 6nn9:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... P03472 1920429
    132182 6nnd:A (1.7) BS02 CO 1.5.1.3 GO:0004146 ... P9WNX1 31282477
    132183 6nne:B (1.595) BS01 CO 1.5.1.3 GO:0000166 ... A5U6B6 31282477
    132184 6nng:A (2.397) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31043459
    132185 6nng:C (2.397) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31043459
    132186 6nnn:A (1.35) BS01 MG N/A GO:0000287 ... N/A 31041362
    132187 6nno:A (1.57) BS01 CA N/A GO:0000287 ... N/A 31041362
    132188 6nnp:A (1.5) BS01 MG N/A GO:0000287 ... N/A 31041362
    132189 6nns:A (1.45) BS01 CA N/A GO:0000287 ... N/A 31041362
    132190 6nnt:A (1.45) BS02 MG N/A GO:0000287 ... N/A 31041362
    132191 6nnu:A (1.46) BS01 CA N/A GO:0000287 ... N/A 31041362
    132192 6no0:A (2.209) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132193 6no0:A (2.209) BS03 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132194 6no0:B (2.209) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132195 6no1:A (2.44) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132196 6no1:A (2.44) BS03 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132197 6no2:A (2.159) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132198 6no2:B (2.159) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132199 6no3:A (1.939) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    132200 6no3:B (1.939) BS02 MG 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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