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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    131601 6nd5:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 30733327
    131602 6nd5:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    131603 6nd5:1D (2.6) BS03 MG ? GO:0002181 ... P60405 30733327
    131604 6nd5:1D (2.6) BS04 MG ? GO:0002181 ... P60405 30733327
    131605 6nd5:1D (2.6) BS05 MG ? GO:0002181 ... P60405 30733327
    131606 6nd5:1D (2.6) BS06 MG ? GO:0002181 ... P60405 30733327
    131607 6nd5:1D (2.6) BS07 MG ? GO:0002181 ... P60405 30733327
    131608 6nd5:1D (2.6) BS08 MG ? GO:0002181 ... P60405 30733327
    131609 6nd5:1D (2.6) BS09 MG ? GO:0002181 ... P60405 30733327
    131610 6nd5:1D (2.6) BS10 MG ? GO:0002181 ... P60405 30733327
    131611 6nd5:1D (2.6) BS11 MG ? GO:0002181 ... P60405 30733327
    131612 6nd5:1D (2.6) BS12 MG ? GO:0002181 ... P60405 30733327
    131613 6nd5:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    131614 6nd5:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 30733327
    131615 6nd5:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 30733327
    131616 6nd5:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 30733327
    131617 6nd5:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 30733327
    131618 6nd5:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    131619 6nd5:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    131620 6nd5:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    131621 6nd5:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 30733327
    131622 6nd5:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 30733327
    131623 6nd5:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 30733327
    131624 6nd5:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 30733327
    131625 6nd5:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 30733327
    131626 6nd5:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 30733327
    131627 6nd5:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 30733327
    131628 6nd5:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 30733327
    131629 6nd5:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 30733327
    131630 6nd5:1N (2.6) BS02 MG ? GO:0003729 ... P60488 30733327
    131631 6nd5:1N (2.6) BS03 MG ? GO:0003729 ... P60488 30733327
    131632 6nd5:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 30733327
    131633 6nd5:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 30733327
    131634 6nd5:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 30733327
    131635 6nd5:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 30733327
    131636 6nd5:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 30733327
    131637 6nd5:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 30733327
    131638 6nd5:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 30733327
    131639 6nd5:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 30733327
    131640 6nd5:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 30733327
    131641 6nd5:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 30733327
    131642 6nd5:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 30733327
    131643 6nd5:1Q (2.6) BS08 MG ? GO:0000049 ... P60489 30733327
    131644 6nd5:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 30733327
    131645 6nd5:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 30733327
    131646 6nd5:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 30733327
    131647 6nd5:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 30733327
    131648 6nd5:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 30733327
    131649 6nd5:1T (2.6) BS03 MG ? GO:0003735 ... P60490 30733327
    131650 6nd5:1U (2.6) BS02 MG ? GO:0000027 ... P60491 30733327
    131651 6nd5:1U (2.6) BS03 MG ? GO:0000027 ... P60491 30733327
    131652 6nd5:1U (2.6) BS04 MG ? GO:0000027 ... P60491 30733327
    131653 6nd5:1U (2.6) BS05 MG ? GO:0000027 ... P60491 30733327
    131654 6nd5:1U (2.6) BS06 MG ? GO:0000027 ... P60491 30733327
    131655 6nd5:1U (2.6) BS07 MG ? GO:0000027 ... P60491 30733327
    131656 6nd5:1U (2.6) BS08 MG ? GO:0000027 ... P60491 30733327
    131657 6nd5:1U (2.6) BS09 MG ? GO:0000027 ... P60491 30733327
    131658 6nd5:1V (2.6) BS02 MG ? GO:0003723 ... P60492 30733327
    131659 6nd5:1V (2.6) BS03 MG ? GO:0003723 ... P60492 30733327
    131660 6nd5:1V (2.6) BS04 MG ? GO:0003723 ... P60492 30733327
    131661 6nd5:1V (2.6) BS05 MG ? GO:0003723 ... P60492 30733327
    131662 6nd5:1V (2.6) BS06 MG ? GO:0003723 ... P60492 30733327
    131663 6nd5:1V (2.6) BS07 MG ? GO:0003723 ... P60492 30733327
    131664 6nd5:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    131665 6nd5:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 30733327
    131666 6nd5:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 30733327
    131667 6nd5:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 30733327
    131668 6nd5:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 30733327
    131669 6nd5:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 30733327
    131670 6nd5:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 30733327
    131671 6nd5:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 30733327
    131672 6nd5:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 30733327
    131673 6nd5:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 30733327
    131674 6nd5:1b (2.6) BS02 MG ? GO:0003735 ... P80371 30733327
    131675 6nd5:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    131676 6nd5:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 30733327
    131677 6nd5:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    131678 6nd5:1k (2.6) BS02 MG ? GO:0003735 ... P80376 30733327
    131679 6nd5:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 30733327
    131680 6nd5:1m (2.6) BS04 MG ? GO:0000049 ... P80377 30733327
    131681 6nd5:1n (2.6) BS02 MG ? GO:0003735 ... P0DOY6 30733327
    131682 6nd5:1n (2.6) BS03 ZN ? GO:0003735 ... P0DOY6 30733327
    131683 6nd5:1t (2.6) BS02 MG ? GO:0003723 ... P80380 30733327
    131684 6nd5:21 (2.6) BS03 MG ? GO:0003735 ... P60494 30733327
    131685 6nd5:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    131686 6nd5:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    131687 6nd5:25 (2.6) BS02 ZN ? GO:0003735 ... P80339 30733327
    131688 6nd5:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 30733327
    131689 6nd5:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    131690 6nd5:2D (2.6) BS03 MG ? GO:0002181 ... P60405 30733327
    131691 6nd5:2D (2.6) BS04 MG ? GO:0002181 ... P60405 30733327
    131692 6nd5:2D (2.6) BS05 MG ? GO:0002181 ... P60405 30733327
    131693 6nd5:2D (2.6) BS06 MG ? GO:0002181 ... P60405 30733327
    131694 6nd5:2D (2.6) BS07 MG ? GO:0002181 ... P60405 30733327
    131695 6nd5:2D (2.6) BS08 MG ? GO:0002181 ... P60405 30733327
    131696 6nd5:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    131697 6nd5:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    131698 6nd5:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    131699 6nd5:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    131700 6nd5:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 30733327
    131701 6nd5:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 30733327
    131702 6nd5:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 30733327
    131703 6nd5:2U (2.6) BS02 MG ? GO:0000027 ... P60491 30733327
    131704 6nd5:2U (2.6) BS03 MG ? GO:0000027 ... P60491 30733327
    131705 6nd5:2U (2.6) BS04 MG ? GO:0000027 ... P60491 30733327
    131706 6nd5:2V (2.6) BS02 MG ? GO:0003723 ... P60492 30733327
    131707 6nd5:2V (2.6) BS03 MG ? GO:0003723 ... P60492 30733327
    131708 6nd5:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    131709 6nd5:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 30733327
    131710 6nd5:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 30733327
    131711 6nd5:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 30733327
    131712 6nd5:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    131713 6nd5:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    131714 6nd5:2k (2.6) BS02 MG ? GO:0003735 ... P80376 30733327
    131715 6nd5:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 30733327
    131716 6nd5:2l (2.6) BS04 MG ? GO:0000049 ... Q5SHN3 30733327
    131717 6nd5:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 30733327
    131718 6nd5:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 30733327
    131719 6nd5:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 30733327
    131720 6nd5:2r (2.6) BS02 MG ? GO:0003735 ... Q5SLQ0 30733327
    131721 6nd5:2t (2.6) BS02 MG ? GO:0003723 ... P80380 30733327
    131722 6nd6:10 (2.85) BS03 MG ? GO:0003735 ... P60493 30733327
    131723 6nd6:10 (2.85) BS04 MG ? GO:0003735 ... P60493 30733327
    131724 6nd6:12 (2.85) BS02 MG ? GO:0003735 ... Q5SHP6 30733327
    131725 6nd6:13 (2.85) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    131726 6nd6:13 (2.85) BS04 MG ? GO:0003735 ... Q5SHQ6 30733327
    131727 6nd6:14 (2.85) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    131728 6nd6:15 (2.85) BS02 MG ? GO:0003735 ... P80339 30733327
    131729 6nd6:15 (2.85) BS03 MG ? GO:0003735 ... P80339 30733327
    131730 6nd6:15 (2.85) BS04 ZN ? GO:0003735 ... P80339 30733327
    131731 6nd6:16 (2.85) BS02 MG ? GO:0000049 ... P35871 30733327
    131732 6nd6:16 (2.85) BS03 MG ? GO:0000049 ... P35871 30733327
    131733 6nd6:16 (2.85) BS04 ZN ? GO:0000049 ... P35871 30733327
    131734 6nd6:18 (2.85) BS02 MG ? GO:0003735 ... Q5SKU1 30733327
    131735 6nd6:18 (2.85) BS03 MG ? GO:0003735 ... Q5SKU1 30733327
    131736 6nd6:18 (2.85) BS04 MG ? GO:0003735 ... Q5SKU1 30733327
    131737 6nd6:19 (2.85) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    131738 6nd6:1D (2.85) BS03 MG ? GO:0002181 ... P60405 30733327
    131739 6nd6:1D (2.85) BS04 MG ? GO:0002181 ... P60405 30733327
    131740 6nd6:1D (2.85) BS05 MG ? GO:0002181 ... P60405 30733327
    131741 6nd6:1D (2.85) BS06 MG ? GO:0002181 ... P60405 30733327
    131742 6nd6:1D (2.85) BS07 MG ? GO:0002181 ... P60405 30733327
    131743 6nd6:1D (2.85) BS08 MG ? GO:0002181 ... P60405 30733327
    131744 6nd6:1D (2.85) BS09 MG ? GO:0002181 ... P60405 30733327
    131745 6nd6:1D (2.85) BS10 MG ? GO:0002181 ... P60405 30733327
    131746 6nd6:1D (2.85) BS11 MG ? GO:0002181 ... P60405 30733327
    131747 6nd6:1D (2.85) BS12 MG ? GO:0002181 ... P60405 30733327
    131748 6nd6:1E (2.85) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    131749 6nd6:1E (2.85) BS03 MG ? GO:0003735 ... Q5SHN8 30733327
    131750 6nd6:1E (2.85) BS04 MG ? GO:0003735 ... Q5SHN8 30733327
    131751 6nd6:1F (2.85) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    131752 6nd6:1F (2.85) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    131753 6nd6:1F (2.85) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    131754 6nd6:1F (2.85) BS05 MG ? GO:0003735 ... Q5SHN9 30733327
    131755 6nd6:1F (2.85) BS06 MG ? GO:0003735 ... Q5SHN9 30733327
    131756 6nd6:1G (2.85) BS04 MG ? GO:0000049 ... Q5SHQ0 30733327
    131757 6nd6:1I (2.85) BS02 MG ? GO:0003735 ... Q5SLQ1 30733327
    131758 6nd6:1N (2.85) BS02 MG ? GO:0003729 ... P60488 30733327
    131759 6nd6:1N (2.85) BS03 MG ? GO:0003729 ... P60488 30733327
    131760 6nd6:1N (2.85) BS04 MG ? GO:0003729 ... P60488 30733327
    131761 6nd6:1P (2.85) BS02 MG ? GO:0003735 ... Q5SHQ7 30733327
    131762 6nd6:1P (2.85) BS03 MG ? GO:0003735 ... Q5SHQ7 30733327
    131763 6nd6:1P (2.85) BS04 MG ? GO:0003735 ... Q5SHQ7 30733327
    131764 6nd6:1P (2.85) BS05 MG ? GO:0003735 ... Q5SHQ7 30733327
    131765 6nd6:1P (2.85) BS06 MG ? GO:0003735 ... Q5SHQ7 30733327
    131766 6nd6:1Q (2.85) BS04 MG ? GO:0000049 ... P60489 30733327
    131767 6nd6:1Q (2.85) BS05 MG ? GO:0000049 ... P60489 30733327
    131768 6nd6:1Q (2.85) BS06 MG ? GO:0000049 ... P60489 30733327
    131769 6nd6:1Q (2.85) BS07 MG ? GO:0000049 ... P60489 30733327
    131770 6nd6:1R (2.85) BS02 MG ? GO:0003735 ... Q9Z9H5 30733327
    131771 6nd6:1S (2.85) BS03 MG ? GO:0003735 ... Q5SHQ4 30733327
    131772 6nd6:1U (2.85) BS02 MG ? GO:0000027 ... P60491 30733327
    131773 6nd6:1U (2.85) BS03 MG ? GO:0000027 ... P60491 30733327
    131774 6nd6:1U (2.85) BS04 MG ? GO:0000027 ... P60491 30733327
    131775 6nd6:1U (2.85) BS05 MG ? GO:0000027 ... P60491 30733327
    131776 6nd6:1U (2.85) BS06 MG ? GO:0000027 ... P60491 30733327
    131777 6nd6:1U (2.85) BS07 MG ? GO:0000027 ... P60491 30733327
    131778 6nd6:1V (2.85) BS02 MG ? GO:0003723 ... P60492 30733327
    131779 6nd6:1V (2.85) BS03 MG ? GO:0003723 ... P60492 30733327
    131780 6nd6:1V (2.85) BS04 MG ? GO:0003723 ... P60492 30733327
    131781 6nd6:1V (2.85) BS05 MG ? GO:0003723 ... P60492 30733327
    131782 6nd6:1V (2.85) BS06 MG ? GO:0003723 ... P60492 30733327
    131783 6nd6:1W (2.85) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    131784 6nd6:1W (2.85) BS03 MG ? GO:0003735 ... Q5SHP3 30733327
    131785 6nd6:1W (2.85) BS04 MG ? GO:0003735 ... Q5SHP3 30733327
    131786 6nd6:1W (2.85) BS05 MG ? GO:0003735 ... Q5SHP3 30733327
    131787 6nd6:1X (2.85) BS02 MG ? GO:0000027 ... Q5SHP0 30733327
    131788 6nd6:1Y (2.85) BS02 MG ? GO:0003723 ... Q5SHP9 30733327
    131789 6nd6:1Y (2.85) BS03 ZN ? GO:0003723 ... Q5SHP9 30733327
    131790 6nd6:1e (2.85) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    131791 6nd6:1e (2.85) BS03 MG ? GO:0003723 ... Q5SHQ5 30733327
    131792 6nd6:1f (2.85) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    131793 6nd6:1k (2.85) BS02 MG ? GO:0003735 ... P80376 30733327
    131794 6nd6:1m (2.85) BS02 MG ? GO:0000049 ... P80377 30733327
    131795 6nd6:1n (2.85) BS02 MG ? GO:0003735 ... P0DOY6 30733327
    131796 6nd6:1n (2.85) BS03 ZN ? GO:0003735 ... P0DOY6 30733327
    131797 6nd6:1t (2.85) BS02 MG ? GO:0003723 ... P80380 30733327
    131798 6nd6:20 (2.85) BS03 MG ? GO:0003735 ... P60493 30733327
    131799 6nd6:23 (2.85) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    131800 6nd6:24 (2.85) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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