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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119801 6cik:C (3.15) BS07 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119802 6cil:A (4.15) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119803 6cil:A (4.15) BS06 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119804 6cil:C (4.15) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119805 6cil:C (4.15) BS06 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119806 6cim:A (3.6) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119807 6cim:A (3.6) BS06 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119808 6cim:C (3.6) BS05 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119809 6cim:C (3.6) BS06 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    119810 6cin:A (2.6) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119811 6cin:B (2.6) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119812 6cin:C (2.6) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119813 6cin:D (2.6) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119814 6cin:E (2.6) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119815 6cin:F (2.6) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119816 6cio:A (3.003) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119817 6cio:B (3.003) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119818 6cio:C (3.003) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119819 6cio:D (3.003) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119820 6cio:E (3.003) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119821 6cio:F (3.003) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119822 6cip:A (3.189) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119823 6cip:B (3.189) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119824 6cip:C (3.189) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119825 6cip:D (3.189) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119826 6cip:E (3.189) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119827 6cip:F (3.189) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119828 6ciq:A (3.302) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119829 6ciq:B (3.302) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119830 6ciq:C (3.302) BS05 MG 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    119831 6cit:A (2.027) BS02 MG 3.6.5.- GO:0000054 ... P62826 29927350
    119832 6cj0:A (1.9) BS01 MG ? GO:0046872 ... B3G2E1 29688811
    119833 6cj0:B (1.9) BS01 MG ? GO:0046872 ... B3G2E1 29688811
    119834 6cj3:A (1.73) BS01 MG 4.1.-.- GO:0000287 ... P9WPE1 31320588
    119835 6cj4:A (1.73) BS01 MG 4.1.-.- GO:0000287 ... P9WPE1 31320588
    119836 6cj9:A (1.7) BS01 CA ? GO:0030246 ... C0HK27 29559315
    119837 6cj9:A (1.7) BS02 MN ? GO:0030246 ... C0HK27 29559315
    119838 6cjh:A (3.6) BS01 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 29526098
    119839 6cjl:B (1.6972) BS02 MG ? GO:0005524 ... P46598 30679438
    119840 6cjv:A (1.547) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30034596
    119841 6ck1:A (2.15) BS01 ZN ? N/A A1B2F4 31428696
    119842 6ck1:A (2.15) BS02 ZN ? N/A A1B2F4 31428696
    119843 6ck1:B (2.15) BS01 ZN ? N/A A1B2F4 31428696
    119844 6ck1:B (2.15) BS02 ZN ? N/A A1B2F4 31428696
    119845 6ck1:C (2.15) BS01 ZN ? N/A A1B2F4 31428696
    119846 6ck1:C (2.15) BS02 ZN ? N/A A1B2F4 31428696
    119847 6ck1:D (2.15) BS01 ZN ? N/A A1B2F4 31428696
    119848 6ck1:D (2.15) BS02 ZN ? N/A A1B2F4 31428696
    119849 6ck6:A (3.32) BS01 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 29526098
    119850 6ck7:A (1.65) BS01 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    119851 6ck7:B (1.65) BS01 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    119852 6ck7:C (1.65) BS01 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    119853 6ck7:D (1.65) BS02 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    119854 6ckb:A (2.8) BS01 MG ? N/A P05106
    P20701    		 30018079
    119855 6ckb:B (2.8) BS01 CA ? N/A P05106
    P20701    		 30018079
    119856 6cko:A (2.0) BS01 ZN ? N/A P55197 29563185
    119857 6cko:B (2.0) BS01 ZN ? N/A P55197 29563185
    119858 6cko:C (2.0) BS01 ZN 2.1.1.360 N/A F1Q4W7 29563185
    119859 6ckx:A (2.8) BS01 MG 2.7.11.22
    2.7.11.23    		 GO:0004672 ... Q9NYV4 30067358
    119860 6ckx:C (2.8) BS01 MG 2.7.11.22
    2.7.11.23    		 GO:0004672 ... Q9NYV4 30067358
    119861 6cl5:A (2.324) BS01 FE ? N/A Q9KW03 30110933
    119862 6cl5:B (2.324) BS01 FE ? N/A Q9KW03 30110933
    119863 6cl5:C (2.324) BS01 FE ? N/A Q9KW03 30110933
    119864 6cl5:D (2.324) BS01 FE ? N/A Q9KW03 30110933
    119865 6cl5:E (2.324) BS01 FE ? N/A Q9KW03 30110933
    119866 6cl5:F (2.324) BS01 FE ? N/A Q9KW03 30110933
    119867 6cl6:A (1.898) BS01 FE ? N/A G3XD71 30110933
    119868 6cl6:A (1.898) BS02 CA ? N/A G3XD71 30110933
    119869 6cl6:B (1.898) BS01 FE ? N/A G3XD71 30110933
    119870 6cl6:B (1.898) BS02 CA ? N/A G3XD71 30110933
    119871 6cl6:C (1.898) BS01 FE ? N/A G3XD71 30110933
    119872 6cl6:C (1.898) BS02 CA ? N/A G3XD71 30110933
    119873 6cl6:D (1.898) BS01 FE ? N/A G3XD71 30110933
    119874 6cl6:D (1.898) BS02 CA ? N/A G3XD71 30110933
    119875 6cl6:E (1.898) BS01 FE ? N/A G3XD71 30110933
    119876 6cl6:E (1.898) BS02 CA ? N/A G3XD71 30110933
    119877 6cl6:F (1.898) BS01 FE ? N/A G3XD71 30110933
    119878 6cl6:F (1.898) BS02 CA ? N/A G3XD71 30110933
    119879 6cm9:C (3.73) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    119880 6cm9:H (3.73) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    119881 6cme:A (1.92) BS01 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119882 6cme:A (1.92) BS02 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119883 6cme:A (1.92) BS03 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119884 6cme:A (1.92) BS04 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119885 6cme:B (1.92) BS01 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119886 6cme:B (1.92) BS02 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119887 6cme:B (1.92) BS03 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119888 6cme:B (1.92) BS04 ZN ? GO:0008270 ... P53776
    Q9CXV0    		 30788856
    119889 6cmk:A (1.732) BS01 ZN ? N/A A8AF35 31428696
    119890 6cmk:A (1.732) BS02 ZN ? N/A A8AF35 31428696
    119891 6cmk:B (1.732) BS01 ZN ? N/A A8AF35 31428696
    119892 6cmk:B (1.732) BS02 ZN ? N/A A8AF35 31428696
    119893 6cn2:A (3.102) BS02 CA 2.7.1.68 GO:0046488 ... Q503I3 29959184
    119894 6cnb:A (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119895 6cnb:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119896 6cnb:B (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    119897 6cnb:I (4.1) BS01 ZN ? GO:0000428 ... Q04307 30083386
    119898 6cnb:J (4.1) BS01 ZN ? GO:0000428 ... P22139 30083386
    119899 6cnb:L (4.1) BS01 ZN ? GO:0000428 ... P40422 30083386
    119900 6cnb:R (4.1) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    119901 6cnc:A (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119902 6cnc:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119903 6cnc:I (4.1) BS01 ZN ? GO:0000428 ... Q04307 30083386
    119904 6cnc:J (4.1) BS01 ZN ? GO:0000428 ... P22139 30083386
    119905 6cnc:L (4.1) BS01 ZN ? GO:0000428 ... P40422 30083386
    119906 6cnc:R (4.1) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    119907 6cnd:A (4.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119908 6cnd:A (4.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119909 6cnd:B (4.8) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    119910 6cnd:I (4.8) BS01 ZN ? GO:0000428 ... Q04307 30083386
    119911 6cnd:J (4.8) BS01 ZN ? GO:0000428 ... P22139 30083386
    119912 6cnd:L (4.8) BS01 ZN ? GO:0000428 ... P40422 30083386
    119913 6cnd:R (4.8) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    119914 6cnf:A (4.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119915 6cnf:A (4.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    119916 6cnf:B (4.5) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    119917 6cnf:I (4.5) BS01 ZN ? GO:0000428 ... Q04307 30083386
    119918 6cnf:J (4.5) BS01 ZN ? GO:0000428 ... P22139 30083386
    119919 6cnf:L (4.5) BS01 ZN ? GO:0000428 ... P40422 30083386
    119920 6cnf:R (4.5) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    119921 6cnl:A (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119922 6cnl:B (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119923 6cnl:C (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119924 6cnl:C (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119925 6cnl:C (2.6) BS06 MG 3.1.3.16 N/A Q96HS1 30705304
    119926 6cnl:C (2.6) BS07 MG 3.1.3.16 N/A Q96HS1 30705304
    119927 6cnl:D (2.6) BS03 MG 3.1.3.16 N/A Q96HS1 30705304
    119928 6cnl:D (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119929 6cnl:D (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119930 6cnl:E (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119931 6cnl:F (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119932 6cnl:F (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119933 6cnl:F (2.6) BS06 MG 3.1.3.16 N/A Q96HS1 30705304
    119934 6cnl:F (2.6) BS07 MG 3.1.3.16 N/A Q96HS1 30705304
    119935 6cnl:G (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119936 6cnl:G (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119937 6cnl:H (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119938 6cnl:I (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119939 6cnl:I (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119940 6cnl:J (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119941 6cnl:J (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119942 6cnl:K (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119943 6cnl:L (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    119944 6cnl:L (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    119945 6cnn:E (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119946 6cnn:E (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119947 6cnn:E (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119948 6cnn:F (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119949 6cnn:F (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119950 6cnn:F (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119951 6cnn:G (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119952 6cnn:G (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119953 6cnn:G (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119954 6cnn:H (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119955 6cnn:H (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119956 6cnn:H (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119957 6cno:E (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119958 6cno:E (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119959 6cno:E (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119960 6cno:F (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119961 6cno:F (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119962 6cno:F (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119963 6cno:G (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119964 6cno:G (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119965 6cno:G (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119966 6cno:H (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    119967 6cno:H (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    119968 6cno:H (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    119969 6cnp:A (2.1) BS03 CA ? GO:0003677 ... Q9UBB5 29567833
    119970 6co7:A (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    119971 6co7:B (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    119972 6co7:C (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    119973 6co7:D (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    119974 6com:A (2.3) BS03 CA 4.1.1.49 GO:0000287 ... P22259 31911238
    119975 6com:A (2.3) BS04 MG 4.1.1.49 GO:0000287 ... P22259 31911238
    119976 6cpa:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 2386784
    119977 6cpd:A (1.903) BS01 CU1 ? GO:0046872 ... A0A452CSS7 30323281
    119978 6cpd:B (1.903) BS01 CU1 ? GO:0046872 ... A0A452CSS7 30323281
    119979 6cpf:A (2.3) BS02 MG 2.7.11.1 GO:0000212 ... O14965 29901437
    119980 6cpm:C (2.011) BS01 CA 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    119981 6cpm:C (2.011) BS02 CA 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    119982 6cpm:C (2.011) BS03 ZN 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    119983 6cpm:D (2.011) BS01 CA 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    119984 6cpm:D (2.011) BS02 ZN 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    119985 6cpm:E (2.011) BS01 CA N/A N/A N/A 30713027
    119986 6cpq:A (1.93) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    119987 6cpq:A (1.93) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    119988 6cpt:A (1.9) BS01 ZN 3.1.4.- GO:0004114 ... Q8NJP9 30231198
    119989 6cpu:A (1.8) BS01 ZN 3.1.4.- GO:0004114 ... Q8NJP9 30231198
    119990 6cq2:A (3.004) BS02 MG 5.6.2.1 GO:0003677 ... P9WG49 29905859
    119991 6cq2:A (3.004) BS03 MG 5.6.2.1 GO:0003677 ... P9WG49 29905859
    119992 6cq2:A (3.004) BS04 MG 5.6.2.1 GO:0003677 ... P9WG49 29905859
    119993 6cq2:A (3.004) BS05 MG 5.6.2.1 GO:0003677 ... P9WG49 29905859
    119994 6cq6:A (3.1) BS01 K ? GO:0005267 ... P97438 28693035
    119995 6cq6:A (3.1) BS02 K ? GO:0005267 ... P97438 28693035
    119996 6cq6:A (3.1) BS03 K ? GO:0005267 ... P97438 28693035
    119997 6cq6:A (3.1) BS04 K ? GO:0005267 ... P97438 28693035
    119998 6cq6:B (3.1) BS01 K ? GO:0005267 ... P97438 28693035
    119999 6cq6:B (3.1) BS02 K ? GO:0005267 ... P97438 28693035
    120000 6cq6:B (3.1) BS03 K ? GO:0005267 ... P97438 28693035
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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