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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119601 6cfl:1U (2.6) BS05 MG ? GO:0000027 ... P60491 29410130
    119602 6cfl:1U (2.6) BS06 MG ? GO:0000027 ... P60491 29410130
    119603 6cfl:1V (2.6) BS02 MG ? GO:0003723 ... P60492 29410130
    119604 6cfl:1V (2.6) BS03 MG ? GO:0003723 ... P60492 29410130
    119605 6cfl:1V (2.6) BS04 MG ? GO:0003723 ... P60492 29410130
    119606 6cfl:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    119607 6cfl:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    119608 6cfl:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    119609 6cfl:1k (2.6) BS02 MG ? GO:0003735 ... P80376 29410130
    119610 6cfl:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    119611 6cfl:1m (2.6) BS02 MG ? GO:0000049 ... P80377 29410130
    119612 6cfl:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119613 6cfl:1n (2.6) BS03 MG ? GO:0003735 ... P0DOY6 29410130
    119614 6cfl:1t (2.6) BS02 MG ? GO:0003723 ... P80380 29410130
    119615 6cfl:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 29410130
    119616 6cfl:1y (2.6) BS03 MG ? GO:0005515 ... P0AD49 29410130
    119617 6cfl:20 (2.6) BS03 MG ? GO:0003735 ... P60493 29410130
    119618 6cfl:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    119619 6cfl:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    119620 6cfl:25 (2.6) BS02 ZN ? GO:0003735 ... P80339 29410130
    119621 6cfl:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 29410130
    119622 6cfl:27 (2.6) BS02 MG ? GO:0003735 ... P80340 29410130
    119623 6cfl:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    119624 6cfl:2D (2.6) BS03 MG ? GO:0002181 ... P60405 29410130
    119625 6cfl:2D (2.6) BS04 MG ? GO:0002181 ... P60405 29410130
    119626 6cfl:2D (2.6) BS05 MG ? GO:0002181 ... P60405 29410130
    119627 6cfl:2D (2.6) BS06 MG ? GO:0002181 ... P60405 29410130
    119628 6cfl:2D (2.6) BS07 MG ? GO:0002181 ... P60405 29410130
    119629 6cfl:2D (2.6) BS08 MG ? GO:0002181 ... P60405 29410130
    119630 6cfl:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    119631 6cfl:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    119632 6cfl:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    119633 6cfl:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    119634 6cfl:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    119635 6cfl:2G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    119636 6cfl:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    119637 6cfl:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 29410130
    119638 6cfl:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 29410130
    119639 6cfl:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    119640 6cfl:2V (2.6) BS02 MG ? GO:0003723 ... P60492 29410130
    119641 6cfl:2V (2.6) BS03 MG ? GO:0003723 ... P60492 29410130
    119642 6cfl:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    119643 6cfl:2W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 29410130
    119644 6cfl:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    119645 6cfl:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    119646 6cfl:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 29410130
    119647 6cfl:2k (2.6) BS02 MG ? GO:0003735 ... P80376 29410130
    119648 6cfl:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    119649 6cfl:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119650 6cfn:A (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119651 6cfn:A (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119652 6cfn:B (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119653 6cfn:B (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119654 6cfn:C (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119655 6cfn:C (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119656 6cfn:D (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119657 6cfn:D (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119658 6cfn:E (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119659 6cfn:E (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119660 6cfn:F (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119661 6cfn:F (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119662 6cfn:G (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119663 6cfn:G (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119664 6cfn:H (2.5) BS01 ZN ? GO:0003700 ... P04150 30201977
    119665 6cfn:H (2.5) BS02 ZN ? GO:0003700 ... P04150 30201977
    119666 6cfo:A (2.7) BS02 MG 1.2.4.1 GO:0004738 ... P08559 29970614
    119667 6cfo:C (2.7) BS02 MG 1.2.4.1 GO:0004738 ... P08559 29970614
    119668 6cfr:A (2.07) BS01 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119669 6cfr:A (2.07) BS02 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119670 6cfs:A (2.07) BS01 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119671 6cfs:A (2.07) BS02 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119672 6cft:A (2.43) BS01 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119673 6cft:A (2.43) BS02 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119674 6cfu:A (2.244) BS01 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119675 6cfu:A (2.244) BS02 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119676 6cfv:A (1.918) BS01 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119677 6cfv:A (1.918) BS02 MG 5.4.2.8 GO:0004615 ... Q92871 29695157
    119678 6cg0:A (3.17) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119679 6cg0:A (3.17) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119680 6cg0:C (3.17) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119681 6cg0:C (3.17) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119682 6cg1:A (2.16) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119683 6cg1:B (2.16) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119684 6cg1:C (2.16) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119685 6cg1:D (2.16) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119686 6cg2:A (2.34) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119687 6cg2:B (2.34) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119688 6cg2:C (2.34) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119689 6cg2:D (2.34) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 29627262
    119690 6cg6:A (2.707) BS01 CA ? GO:0005509 ... P70408 29742438
    119691 6cg6:A (2.707) BS02 CA ? GO:0005509 ... P70408 29742438
    119692 6cg6:A (2.707) BS03 CA ? GO:0005509 ... P70408 29742438
    119693 6cg7:A (2.705) BS01 CA ? GO:0005509 ... Q9WTP5 29742438
    119694 6cg7:A (2.705) BS02 CA ? GO:0005509 ... Q9WTP5 29742438
    119695 6cg7:A (2.705) BS03 CA ? GO:0005509 ... Q9WTP5 29742438
    119696 6cg7:B (2.705) BS01 CA ? GO:0005509 ... Q9WTP5 29742438
    119697 6cg7:B (2.705) BS02 CA ? GO:0005509 ... Q9WTP5 29742438
    119698 6cg7:B (2.705) BS03 CA ? GO:0005509 ... Q9WTP5 29742438
    119699 6cgb:A (2.994) BS01 CA ? GO:0005509 ... P55288
    P97326
    29742438
    119700 6cgb:A (2.994) BS02 CA ? GO:0005509 ... P55288
    P97326
    29742438
    119701 6cgb:A (2.994) BS03 CA ? GO:0005509 ... P55288
    P97326
    29742438
    119702 6cgd:A (2.2) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119703 6cgd:B (2.2) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119704 6cgd:C (2.2) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119705 6cgd:D (2.2) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119706 6cgf:A (1.94) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30044217
    119707 6cgg:A (2.4) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119708 6cgg:B (2.4) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119709 6cgg:C (2.4) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119710 6cgg:D (2.4) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119711 6cgj:A (1.75) BS01 MG ? N/A Q5ZWI4 29976756
    119712 6cgk:A (1.668) BS02 MG ? N/A Q5ZWI4 29976756
    119713 6cgp:A (2.5) BS01 ZN ? N/A A7YT55 29790770
    119714 6cgs:A (1.72) BS01 CA ? GO:0005509 ... Q8BM92 29742438
    119715 6cgs:A (1.72) BS02 CA ? GO:0005509 ... Q8BM92 29742438
    119716 6cgs:A (1.72) BS03 CA ? GO:0005509 ... Q8BM92 29742438
    119717 6cgs:B (1.72) BS01 CA ? GO:0005509 ... Q8BM92 29742438
    119718 6cgs:B (1.72) BS02 CA ? GO:0005509 ... Q8BM92 29742438
    119719 6cgs:B (1.72) BS03 CA ? GO:0005509 ... Q8BM92 29742438
    119720 6cgt:A (2.6) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    119721 6cgt:A (2.6) BS07 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    119722 6cgu:A (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    119723 6cgu:A (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    119724 6cgu:A (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    119725 6cgu:B (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    119726 6cgu:B (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    119727 6cgu:B (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    119728 6cgu:C (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    119729 6cgu:C (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    119730 6cgu:C (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    119731 6cgu:C (1.9) BS04 CA ? GO:0005509 ... P97326 29742438
    119732 6cgu:D (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    119733 6cgu:D (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    119734 6cgu:D (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    119735 6cgu:D (1.9) BS04 CA ? GO:0005509 ... P97326 29742438
    119736 6cgy:A (1.65) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119737 6cgy:A (1.65) BS03 CO 3.1.1.81 N/A T0BMH6 30050039
    119738 6cgy:H (1.65) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119739 6cgy:H (1.65) BS03 CO 3.1.1.81 N/A T0BMH6 30050039
    119740 6cgy:L (1.65) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119741 6cgy:L (1.65) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119742 6cgz:A (1.8) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119743 6cgz:A (1.8) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119744 6cgz:B (1.8) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119745 6cgz:B (1.8) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119746 6cgz:C (1.8) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119747 6cgz:C (1.8) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119748 6ch0:C (2.15) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119749 6ch0:C (2.15) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119750 6ch0:F (2.15) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119751 6ch0:F (2.15) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119752 6ch0:I (2.15) BS01 CO 3.1.1.81 N/A T0BMH6 30050039
    119753 6ch0:I (2.15) BS02 CO 3.1.1.81 N/A T0BMH6 30050039
    119754 6ch4:A (2.3) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119755 6ch4:B (2.3) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119756 6ch4:C (2.3) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119757 6ch4:D (2.3) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    119758 6chs:A (4.3) BS01 ZN ? GO:0005634 ... G0S0B4 29967539
    119759 6chs:A (4.3) BS02 ZN ? GO:0005634 ... G0S0B4 29967539
    119760 6chs:E (4.3) BS03 MG ? GO:0005524 ... G0S6Y2 29967539
    119761 6chs:F (4.3) BS03 MG ? GO:0005524 ... G0S6Y2 29967539
    119762 6chs:H (4.3) BS03 MG ? GO:0005524 ... G0S6Y2 29967539
    119763 6chs:I (4.3) BS03 MG ? GO:0005524 ... G0S6Y2 29967539
    119764 6chs:J (4.3) BS03 MG ? GO:0005524 ... G0S6Y2 29967539
    119765 6chu:A (1.61) BS01 MG 4.1.-.- GO:0000287 ... P9WPE1 31320588
    119766 6ci0:A (2.4) BS06 CU 7.1.1.9 GO:0004129 ... P33517 29626419
    119767 6ci0:A (2.4) BS07 MG 7.1.1.9 GO:0004129 ... P33517 29626419
    119768 6ci0:A (2.4) BS08 CA 7.1.1.9 GO:0004129 ... P33517 29626419
    119769 6ci0:B (2.4) BS01 CU 7.1.1.9 GO:0004129 ... Q03736 29626419
    119770 6ci0:B (2.4) BS02 CU 7.1.1.9 GO:0004129 ... Q03736 29626419
    119771 6ci0:C (2.4) BS01 MG 7.1.1.9 GO:0004129 ... P33517 29626419
    119772 6ci0:C (2.4) BS02 CA 7.1.1.9 GO:0004129 ... P33517 29626419
    119773 6ci0:C (2.4) BS03 CU 7.1.1.9 GO:0004129 ... P33517 29626419
    119774 6ci0:D (2.4) BS03 CU 7.1.1.9 GO:0004129 ... Q03736 29626419
    119775 6ci0:D (2.4) BS04 CU 7.1.1.9 GO:0004129 ... Q03736 29626419
    119776 6cib:A (2.05) BS02 MG ? GO:0000166 ... Q8TZ25 29507203
    119777 6cib:B (2.05) BS02 MG ? GO:0000166 ... Q8TZ25 29507203
    119778 6cib:C (2.05) BS02 MG ? GO:0000166 ... Q8TZ25 29507203
    119779 6cib:D (2.05) BS02 MG ? GO:0000166 ... Q8TZ25 29507203
    119780 6cib:E (2.05) BS02 MG ? GO:0000166 ... Q8TZ25 29507203
    119781 6cib:F (2.05) BS02 MG ? GO:0000166 ... Q8TZ25 29507203
    119782 6cic:A (1.752) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 30335983
    119783 6cic:B (1.752) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 30335983
    119784 6cid:A (1.75) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 30335983
    119785 6cid:B (1.75) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 30335983
    119786 6cie:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119787 6cie:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119788 6cie:C (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119789 6cie:D (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119790 6cif:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119791 6cif:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119792 6cif:C (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119793 6cif:D (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 30335983
    119794 6cij:A (3.9) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119795 6cij:A (3.9) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119796 6cij:C (3.9) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119797 6cij:C (3.9) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119798 6cik:A (3.15) BS05 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119799 6cik:A (3.15) BS06 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    119800 6cik:C (3.15) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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