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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119201 6cap:C (3.4) BS03 MG ? GO:0003676 ... P80372 N/A
    119202 6cap:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    119203 6cap:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    119204 6cap:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    119205 6caq:B (3.4) BS02 MG ? GO:0003735 ... P80371 N/A
    119206 6caq:C (3.4) BS02 MG ? GO:0003676 ... P80372 N/A
    119207 6caq:C (3.4) BS03 MG ? GO:0003676 ... P80372 N/A
    119208 6caq:F (3.4) BS02 MG ? GO:0003735 ... Q5SLP8 N/A
    119209 6caq:G (3.4) BS02 MG ? GO:0000028 ... P17291 N/A
    119210 6caq:G (3.4) BS03 MG ? GO:0000028 ... P17291 N/A
    119211 6caq:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    119212 6caq:K (3.4) BS02 MG ? GO:0003735 ... P80376 N/A
    119213 6caq:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    119214 6car:B (3.4) BS02 MG ? GO:0003735 ... P80371 30113694
    119215 6car:C (3.4) BS02 MG ? GO:0003676 ... P80372 30113694
    119216 6car:C (3.4) BS03 MG ? GO:0003676 ... P80372 30113694
    119217 6car:D (3.4) BS02 MG ? GO:0003723 ... P80373 30113694
    119218 6car:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 30113694
    119219 6car:K (3.4) BS02 MG ? GO:0003735 ... P80376 30113694
    119220 6car:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 30113694
    119221 6car:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 30113694
    119222 6cas:B (3.5) BS02 MG ? GO:0003735 ... P80371 30113694
    119223 6cas:C (3.5) BS02 MG ? GO:0003676 ... P80372 30113694
    119224 6cas:C (3.5) BS03 MG ? GO:0003676 ... P80372 30113694
    119225 6cas:D (3.5) BS02 MG ? GO:0003723 ... P80373 30113694
    119226 6cas:J (3.5) BS02 MG ? GO:0000049 ... Q5SHN7 30113694
    119227 6cas:K (3.5) BS02 MG ? GO:0003735 ... P80376 30113694
    119228 6cas:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 30113694
    119229 6cas:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 30113694
    119230 6cas:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 30113694
    119231 6cau:A (2.5) BS02 MG 6.3.2.8 GO:0005524 ... B7GV74 N/A
    119232 6cav:A (2.6) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119233 6cav:B (2.6) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119234 6cav:C (2.6) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119235 6cav:D (2.6) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119236 6cax:A (1.25) BS03 ZN 3.5.1.108 GO:0006796 ... B7UZI4 N/A
    119237 6cb1:j (4.6) BS03 ZN ? GO:0000448 ... P49166 29512650
    119238 6cba:A (1.13) BS01 MN 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    119239 6cbd:A (2.203) BS06 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    119240 6cbs:A (1.85) BS01 ZN 2.7.7.101 GO:0003896 ... P0ABS5 N/A
    119241 6cbs:B (1.85) BS01 ZN 2.7.7.101 GO:0003896 ... P0ABS5 N/A
    119242 6cbt:A (2.1) BS01 ZN 2.7.7.101 GO:0003896 ... P0ABS5 N/A
    119243 6cbt:B (2.1) BS01 ZN 2.7.7.101 GO:0003896 ... P0ABS5 N/A
    119244 6cbx:A (1.94) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    119245 6cbx:A (1.94) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    119246 6cbx:A (1.94) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    119247 6cbx:B (1.94) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    119248 6cbx:B (1.94) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    119249 6cbx:B (1.94) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    119250 6cby:A (2.55) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 31415173
    119251 6cby:A (2.55) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 31415173
    119252 6cby:A (2.55) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 31415173
    119253 6cby:B (2.55) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 31415173
    119254 6cby:B (2.55) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 31415173
    119255 6cby:B (2.55) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 31415173
    119256 6cc9:B (-1.00) BS04 MG 3.6.5.2 GO:0000139 ... P01116 30122370
    119257 6cce:D (3.05) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 30297823
    119258 6cce:D (3.05) BS02 MG 2.7.7.6 GO:0000287 ... A0QS66 30297823
    119259 6cch:B (-1.00) BS02 MG 3.6.5.2 GO:0000139 ... P01116 30122370
    119260 6ccv:D (3.05) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 30297823
    119261 6ccv:D (3.05) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 30297823
    119262 6ccx:B (-1.00) BS04 MG 3.6.5.2 GO:0000139 ... P01116 30122370
    119263 6cd3:A (2.612) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    119264 6cd3:A (2.612) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    119265 6cda:A (2.0) BS01 ZN ? GO:0003700 ... O85142 29953213
    119266 6cdb:A (1.99) BS01 ZN ? GO:0003700 ... O85142 29953213
    119267 6cdb:B (1.99) BS01 ZN ? GO:0003700 ... O85142 29953213
    119268 6cdd:A (2.58234) BS01 ZN ? GO:0006511 ... G0S0B4 29967539
    119269 6cdd:A (2.58234) BS02 ZN ? GO:0006511 ... G0S0B4 29967539
    119270 6cdd:B (2.58234) BS01 ZN ? GO:0006511 ... G0S0B4 29967539
    119271 6cdd:B (2.58234) BS02 ZN ? GO:0006511 ... G0S0B4 29967539
    119272 6cdh:A (1.821) BS01 FE2 1.13.11.20 GO:0000097 ... Q16878 29942080
    119273 6cdk:B (2.1) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    119274 6cdk:B (2.1) BS03 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    119275 6cdk:D (2.1) BS01 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    119276 6cdk:D (2.1) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    119277 6cdn:A (2.055) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 29942080
    119278 6cdw:A (1.84) BS01 MG ? N/A Q5ZWI4 29976756
    119279 6ce6:A (1.6) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119280 6ce6:A (1.6) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119281 6ce6:A (1.6) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119282 6ce8:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119283 6ce8:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119284 6ce8:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119285 6cea:A (1.6) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119286 6cea:A (1.6) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119287 6cea:A (1.6) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119288 6cec:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119289 6cec:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119290 6cec:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119291 6ced:A (1.7) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119292 6ced:A (1.7) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119293 6ced:A (1.7) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119294 6cee:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119295 6cee:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119296 6cee:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119297 6cef:A (1.8) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119298 6cef:A (1.8) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119299 6cef:A (1.8) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29741882
    119300 6ceh:A (1.43) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29795760
    119301 6cel:A (1.7) BS09 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    119302 6cel:A (1.7) BS10 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    119303 6cen:A (1.61) BS03 ZN 2.1.1.370
    2.1.1.371    		 GO:0005634 ... Q9BZ95 29742153
    119304 6cen:A (1.61) BS04 ZN 2.1.1.370
    2.1.1.371    		 GO:0005634 ... Q9BZ95 29742153
    119305 6cen:A (1.61) BS05 ZN 2.1.1.370
    2.1.1.371    		 GO:0005634 ... Q9BZ95 29742153
    119306 6ceo:A (1.896) BS02 MG 3.6.4.10 GO:0005524 ... P07900 29528635
    119307 6ceo:A (1.896) BS03 MG 3.6.4.10 GO:0005524 ... P07900 29528635
    119308 6ceo:A (1.896) BS04 MG 3.6.4.10 GO:0005524 ... P07900 29528635
    119309 6ceo:A (1.896) BS05 MG 3.6.4.10 GO:0005524 ... P07900 29528635
    119310 6ceo:A (1.896) BS06 MG 3.6.4.10 GO:0005524 ... P07900 29528635
    119311 6cer:E (2.69) BS02 MG 1.2.4.1 GO:0004738 ... P08559 29970614
    119312 6cey:A (2.4) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119313 6cey:B (2.4) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119314 6cey:C (2.4) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119315 6cey:D (2.4) BS03 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    119316 6cf3:A (1.12) BS01 MN 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    119317 6cfj:10 (2.8) BS03 MG ? GO:0003735 ... P60493 29410130
    119318 6cfj:11 (2.8) BS02 MG ? GO:0003735 ... P60494 29410130
    119319 6cfj:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 29410130
    119320 6cfj:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    119321 6cfj:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    119322 6cfj:15 (2.8) BS02 MG ? GO:0003735 ... P80339 29410130
    119323 6cfj:15 (2.8) BS03 MG ? GO:0003735 ... P80339 29410130
    119324 6cfj:15 (2.8) BS04 ZN ? GO:0003735 ... P80339 29410130
    119325 6cfj:15 (2.8) BS05 MG ? GO:0003735 ... P80339 29410130
    119326 6cfj:16 (2.8) BS02 MG ? GO:0000049 ... P35871 29410130
    119327 6cfj:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 29410130
    119328 6cfj:16 (2.8) BS04 MG ? GO:0000049 ... P35871 29410130
    119329 6cfj:17 (2.8) BS02 MG ? GO:0003735 ... P80340 29410130
    119330 6cfj:17 (2.8) BS03 MG ? GO:0003735 ... P80340 29410130
    119331 6cfj:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 29410130
    119332 6cfj:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 29410130
    119333 6cfj:18 (2.8) BS04 MG ? GO:0003735 ... Q5SKU1 29410130
    119334 6cfj:18 (2.8) BS05 MG ? GO:0003735 ... Q5SKU1 29410130
    119335 6cfj:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    119336 6cfj:1D (2.8) BS03 MG ? GO:0002181 ... P60405 29410130
    119337 6cfj:1D (2.8) BS04 MG ? GO:0002181 ... P60405 29410130
    119338 6cfj:1D (2.8) BS05 MG ? GO:0002181 ... P60405 29410130
    119339 6cfj:1D (2.8) BS06 MG ? GO:0002181 ... P60405 29410130
    119340 6cfj:1D (2.8) BS07 MG ? GO:0002181 ... P60405 29410130
    119341 6cfj:1D (2.8) BS08 MG ? GO:0002181 ... P60405 29410130
    119342 6cfj:1D (2.8) BS09 MG ? GO:0002181 ... P60405 29410130
    119343 6cfj:1D (2.8) BS10 MG ? GO:0002181 ... P60405 29410130
    119344 6cfj:1D (2.8) BS11 MG ? GO:0002181 ... P60405 29410130
    119345 6cfj:1D (2.8) BS12 MG ? GO:0002181 ... P60405 29410130
    119346 6cfj:1D (2.8) BS13 MG ? GO:0002181 ... P60405 29410130
    119347 6cfj:1D (2.8) BS14 MG ? GO:0002181 ... P60405 29410130
    119348 6cfj:1D (2.8) BS15 MG ? GO:0002181 ... P60405 29410130
    119349 6cfj:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    119350 6cfj:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    119351 6cfj:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 29410130
    119352 6cfj:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    119353 6cfj:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    119354 6cfj:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    119355 6cfj:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 29410130
    119356 6cfj:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 29410130
    119357 6cfj:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 29410130
    119358 6cfj:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 29410130
    119359 6cfj:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 29410130
    119360 6cfj:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 29410130
    119361 6cfj:1F (2.8) BS11 MG ? GO:0003735 ... Q5SHN9 29410130
    119362 6cfj:1F (2.8) BS12 MG ? GO:0003735 ... Q5SHN9 29410130
    119363 6cfj:1F (2.8) BS13 MG ? GO:0003735 ... Q5SHN9 29410130
    119364 6cfj:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    119365 6cfj:1I (2.8) BS02 MG ? GO:0003735 ... Q5SLQ1 29410130
    119366 6cfj:1N (2.8) BS02 MG ? GO:0003729 ... P60488 29410130
    119367 6cfj:1N (2.8) BS03 MG ? GO:0003729 ... P60488 29410130
    119368 6cfj:1N (2.8) BS04 MG ? GO:0003729 ... P60488 29410130
    119369 6cfj:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 29410130
    119370 6cfj:1O (2.8) BS04 MG ? GO:0003735 ... Q5SHP8 29410130
    119371 6cfj:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 29410130
    119372 6cfj:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 29410130
    119373 6cfj:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 29410130
    119374 6cfj:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 29410130
    119375 6cfj:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 29410130
    119376 6cfj:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 29410130
    119377 6cfj:1Q (2.8) BS07 MG ? GO:0000049 ... P60489 29410130
    119378 6cfj:1Q (2.8) BS08 MG ? GO:0000049 ... P60489 29410130
    119379 6cfj:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    119380 6cfj:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 29410130
    119381 6cfj:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 29410130
    119382 6cfj:1T (2.8) BS03 MG ? GO:0003735 ... P60490 29410130
    119383 6cfj:1U (2.8) BS02 MG ? GO:0000027 ... P60491 29410130
    119384 6cfj:1U (2.8) BS03 MG ? GO:0000027 ... P60491 29410130
    119385 6cfj:1U (2.8) BS04 MG ? GO:0000027 ... P60491 29410130
    119386 6cfj:1U (2.8) BS05 MG ? GO:0000027 ... P60491 29410130
    119387 6cfj:1U (2.8) BS06 MG ? GO:0000027 ... P60491 29410130
    119388 6cfj:1U (2.8) BS07 MG ? GO:0000027 ... P60491 29410130
    119389 6cfj:1U (2.8) BS08 MG ? GO:0000027 ... P60491 29410130
    119390 6cfj:1V (2.8) BS02 MG ? GO:0003723 ... P60492 29410130
    119391 6cfj:1V (2.8) BS03 MG ? GO:0003723 ... P60492 29410130
    119392 6cfj:1V (2.8) BS04 MG ? GO:0003723 ... P60492 29410130
    119393 6cfj:1V (2.8) BS05 MG ? GO:0003723 ... P60492 29410130
    119394 6cfj:1V (2.8) BS06 MG ? GO:0003723 ... P60492 29410130
    119395 6cfj:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    119396 6cfj:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 29410130
    119397 6cfj:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 29410130
    119398 6cfj:1W (2.8) BS05 MG ? GO:0003735 ... Q5SHP3 29410130
    119399 6cfj:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 29410130
    119400 6cfj:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 29410130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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